mRNA_H-elongata_contig184973.4993.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig184973.4993.1
Unique NamemRNA_H-elongata_contig184973.4993.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig184973.4993.1 vs. uniprot
Match: A0A6H5KJS7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS7_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.070e-11
Identity = 47/130 (36.15%), Postives = 65/130 (50.00%), Query Frame = 1
Query:   13 QVLTVAKHFPYRFCEFILDTARAVVQLHNQHAPTTTPLPGYHTLFQKKEVANSQDGLSGVFHANGIACVAMEDVADR--GDLIGTRHPRLCASKCCSIRTCFQAAAMLDARGKGVLLKRAECFTQACRAV 396
            ++L +A   P RF E +   A AV   +  H     PLP    L +++       GL G +HA  IA + +  V +R  G  I T+  R         + C+ A   L+ARG+GV L+R ECFTQACRAV
Sbjct:   60 ELLLIAAQTPERFREAMQAAAVAVGARYCNHDTPPGPLPDIGKLPERQAAVQQHAGLCGKYHAEHIANIDVTMVEERAAGAEITTKRMRN--------QACYDAGTALNARGRGVQLRRQECFTQACRAV 181          
BLAST of mRNA_H-elongata_contig184973.4993.1 vs. uniprot
Match: A0A6H5JXC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC7_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.570e-10
Identity = 47/133 (35.34%), Postives = 64/133 (48.12%), Query Frame = 1
Query:    4 VSAQVLTVAKHFPYRFCEFILDTARAVVQLHNQHAPTTTPLPGYHTLFQKKEVANSQDGLSGVFHANGIACVAMEDVADR--GDLIGTRHPRLCASKCCSIRTCFQAAAMLDARGKGVLLKRAECFTQACRAV 396
            +S   L +A   P RF E +   A AV   +  H     PLP    L +++  A    GL G +HA  IA + +  V  R  G  I T+  R         + C+ A   L+ARG+GV L+R +CFT ACRAV
Sbjct:   38 LSILXLLIAAQTPERFREALQAAAVAVGARYCNHDTPPGPLPDISKLPERQAAAQQHAGLCGKYHAEHIANIDVTMVETRAAGAEITTKRMRN--------KACYDAGTALNARGRGVQLRRQKCFTHACRAV 162          
BLAST of mRNA_H-elongata_contig184973.4993.1 vs. uniprot
Match: A0A6H5KGD0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGD0_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.590e-10
Identity = 46/130 (35.38%), Postives = 64/130 (49.23%), Query Frame = 1
Query:   13 QVLTVAKHFPYRFCEFILDTARAVVQLHNQHAPTTTPLPGYHTLFQKKEVANSQDGLSGVFHANGIACVAMEDVADR--GDLIGTRHPRLCASKCCSIRTCFQAAAMLDARGKGVLLKRAECFTQACRAV 396
            ++L +A   P RF E +   A AV   +  H     PLP    L +++       GL G +HA  IA + +  V +R  G  I T+  R         + C+ A   L+ARG+GV L+R ECFTQAC AV
Sbjct:   30 ELLLMAAQTPERFREALQAAAVAVGARYCNHDTPPGPLPDISKLPERQAAVQQHAGLCGKYHAEHIANIDVTRVEERAAGAEITTKRMRN--------QACYDAGTALNARGRGVQLRRQECFTQACCAV 151          
BLAST of mRNA_H-elongata_contig184973.4993.1 vs. uniprot
Match: A0A6H5KUP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUP8_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 6.000e-10
Identity = 43/113 (38.05%), Postives = 53/113 (46.90%), Query Frame = 1
Query:   58 FILDTARAVVQLHNQHAPTTTPLPGYHTLFQKKEVANSQDGLSGVFHANGIACVAMEDVADRGDLIGTRHPRLCASKCCSIRTCFQAAAMLDARGKGVLLKRAECFTQACRAV 396
            F  + A  V   +  H     P+P    L   K+ A    GL GV+HA+ IA V  EDV  R         R         + C+  A  ++ARGKGV LKRAECFT A RAV
Sbjct:   42 FAFEVAAKVGAEYCHHDTAPEPMPSM-ALAAAKKAAAEHPGLCGVYHAHIIAAVRTEDVTSRSGSTAANKFRN--------QACYDGAMAMNARGKGVQLKRAECFTHARRAV 145          
BLAST of mRNA_H-elongata_contig184973.4993.1 vs. uniprot
Match: A0A6H5JH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH50_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 7.500e-10
Identity = 43/119 (36.13%), Postives = 60/119 (50.42%), Query Frame = 1
Query:   58 FILDTARAVVQLHNQHAPTTTPLPGYHTLFQKKEVANSQDGLSGVFHANGIACVAMEDVADR-GDLIGTRHPRLCASKCCSIRTCFQAAAMLDARGKGVLLKRAECFTQACRAVLAASG 411
            F  + A  V   +  H     PL       +KK  A+   GL GV+HA+ IA V  +DVA++     G ++           + C+  A  ++ARG GV L RAECFT+ACRA+L  SG
Sbjct:  113 FAFEVASKVGARYCSHVSAPEPLEDMSHAKRKKAAAD-HPGLCGVYHAHIIAAVRTQDVAEKWNQTTGNKYRN---------QACYNGAEAVNARGAGVQLPRAECFTRACRALLPGSG 221          
BLAST of mRNA_H-elongata_contig184973.4993.1 vs. uniprot
Match: A0A6H5JXX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX9_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.290e-9
Identity = 41/113 (36.28%), Postives = 51/113 (45.13%), Query Frame = 1
Query:   58 FILDTARAVVQLHNQHAPTTTPLPGYHTLFQKKEVANSQDGLSGVFHANGIACVAMEDVADRGDLIGTRHPRLCASKCCSIRTCFQAAAMLDARGKGVLLKRAECFTQACRAV 396
            F  + A  V   +  H     P+P    L   K+ A    GL GV HA+ IA V  EDV  R         R         + C+     ++ RGKGV LKRA+CFT ACRAV
Sbjct:   44 FAFEVAAKVGAEYCHHDTAPEPMPSM-ALAAAKKAAAEHPGLCGVHHAHIIAAVRTEDVTSRSGFTAANKFRN--------QACYDGGMAMNTRGKGVQLKRADCFTHACRAV 147          
BLAST of mRNA_H-elongata_contig184973.4993.1 vs. uniprot
Match: A0A6H5K3W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3W2_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 5.600e-9
Identity = 45/130 (34.62%), Postives = 62/130 (47.69%), Query Frame = 1
Query:   13 QVLTVAKHFPYRFCEFILDTARAVVQLHNQHAPTTTPLPGYHTLFQKKEVANSQDGLSGVFHANGIACVAMEDVADR--GDLIGTRHPRLCASKCCSIRTCFQAAAMLDARGKGVLLKRAECFTQACRAV 396
            ++L +A   P  F E +   A AV   +  H     PLP    L + +  A    G  G +H   IA + +  V +R  G  I T+  R         + C+ A   L+ARG+GV L+R ECFTQACRAV
Sbjct:  164 ELLLIAAQTPEGFREALQAAAVAVGARYCNHDTPPGPLPDISKLPEMQAAAQQHAGSCGKYHGEHIANIDVTMVKERAAGAEITTKRMRN--------QACYDAGTALNARGRGVQLRRQECFTQACRAV 285          
BLAST of mRNA_H-elongata_contig184973.4993.1 vs. uniprot
Match: A0A6H5JAI4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAI4_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 5.870e-9
Identity = 36/81 (44.44%), Postives = 43/81 (53.09%), Query Frame = 1
Query:  154 KEVANSQDGLSGVFHANGIACVAMEDVADRGDLIGTRHPRLCASKCCSIRTCFQAAAMLDARGKGVLLKRAECFTQACRAV 396
            K+ A    GL GV+HA+ IA V  EDV  R         R         + C+  A  ++ARGKGV LKRAECFT A RAV
Sbjct:   10 KKAAAEHPGLCGVYHAHIIAAVRTEDVTSRSGSTAANKFRN--------QACYDGAMAMNARGKGVQLKRAECFTHAGRAV 82          
BLAST of mRNA_H-elongata_contig184973.4993.1 vs. uniprot
Match: A0A6H5K6B0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B0_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.320e-8
Identity = 41/113 (36.28%), Postives = 52/113 (46.02%), Query Frame = 1
Query:   58 FILDTARAVVQLHNQHAPTTTPLPGYHTLFQKKEVANSQDGLSGVFHANGIACVAMEDVADRGDLIGTRHPRLCASKCCSIRTCFQAAAMLDARGKGVLLKRAECFTQACRAV 396
            F  + A  V   +  H     P+P    L   K+ A    GL GV+HA+ IA V  EDV  +         R         + C+  A  ++A GKGV LKRAECFT A RAV
Sbjct:  111 FAFEVAAKVGAEYCHHDTAPEPMPSM-ALAAAKKAAAEHPGLCGVYHAHIIAAVRTEDVTSQSGSTAANKFRN--------QACYDGAMAMNAHGKGVQLKRAECFTHARRAV 214          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184973.4993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KJS7_9PHAE2.070e-1136.15Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXC7_9PHAE1.570e-1035.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGD0_9PHAE2.590e-1035.38Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUP8_9PHAE6.000e-1038.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH50_9PHAE7.500e-1036.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXX9_9PHAE1.290e-936.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3W2_9PHAE5.600e-934.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAI4_9PHAE5.870e-944.44Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6B0_9PHAE3.320e-836.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig184973contigH-elongata_contig184973:34..1105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930058.7492638-CDS-H-elongata_contig184973:33..1811622930058.7492638-CDS-H-elongata_contig184973:33..181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184973 34..181 -
1691679264.7872663-CDS-H-elongata_contig184973:33..1811691679264.7872663-CDS-H-elongata_contig184973:33..181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184973 34..181 -
1622930058.7665174-CDS-H-elongata_contig184973:842..11051622930058.7665174-CDS-H-elongata_contig184973:842..1105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184973 843..1105 -
1691679264.8053253-CDS-H-elongata_contig184973:842..11051691679264.8053253-CDS-H-elongata_contig184973:842..1105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184973 843..1105 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig184973.4993.1prot_H-elongata_contig184973.4993.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig184973 34..1105 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig184973.4993.1

>prot_H-elongata_contig184973.4993.1 ID=prot_H-elongata_contig184973.4993.1|Name=mRNA_H-elongata_contig184973.4993.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
AVSAQVLTVAKHFPYRFCEFILDTARAVVQLHNQHAPTTTPLPGYHTLFQ
KKEVANSQDGLSGVFHANGIACVAMEDVADRGDLIGTRHPRLCASKCCSI
RTCFQAAAMLDARGKGVLLKRAECFTQACRAVLAASG
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mRNA from alignment at H-elongata_contig184973:34..1105-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig184973.4993.1 ID=mRNA_H-elongata_contig184973.4993.1|Name=mRNA_H-elongata_contig184973.4993.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1072bp|location=Sequence derived from alignment at H-elongata_contig184973:34..1105- (Himanthalia elongata Himel1 dioecious)
GCTGTGTCGGCTCAGGTGCTGACCGTGGCGAAGCATTTTCCCTACAGGTT TTGCGAGTTCATCCTTGATACAGCGCGTGCTGTTGTGCAGCTTCACAACC AGCATGCACCGACAACGACACCCCTCCCTGGGTATCACACGTTGTTTCAG AAGAAAGAAGTCGCAAATAGTCAGGATGGTCTATCCGGAGTGTTCCACGC CAACGGGATCGCTTGCGTGGCGATGGAGGACGTTGCTGACAGAGGCGACC TGATCGGTACTCGGTACCATAAGAGGTGATCTCAAAATCTCAACCATCAT ATATAGTTATATACAGTATACAGTTATTCTAATTTCCTGTTTATATCTCA TATTTATTCTACTAGTGTATTATACTGAGTACCAGACAGCAGTGAAGCAT ACGCTCCTGTTCCAGTGTTATATCGCCGTGTGTACTATACAGTAAGGCAG CGTACGATCCTGTTTCAGTTCCATACTCGCATTCTTACTCCTGTATGCTG TCTACTATAGATCAATAAGTACGTTCCGGATTCGACGAACATTAGACAGC AACTGCGCATTGTAGTCCATTGGTAGCCTATTCAGACAGCATCTCACCTC GGAAGTAAATAATCAGGTATACATCAAGCAGCCCTAGGGAACAACTATCG TCTGGTGCGTAGACTGCTGAAACGGATGTGGATTCGGTTCACGATATGGA TGTAGTACGAAGCCCAGACGTAATTACACAACCCATCATGAGGCAAGGAC ATTCACCTACATGTATCCATTGTCGCCGGTTACCACATAATTTTCCACGT GGCGATAGGACCCCTTCTCCGTTACAGTATGGATCGTAATGGATTCAATG GAATTATGCACACGTTACTTTATTTTACTCTGTCTCTTGCGCTTCTACGT AGCATGACCCGTACATCACCACAGACACCCTCGTCTATGCGCGTCAAAAT GCTGTTCAATTCGCACCTGTTTCCAGGCTGCGGCAATGTTAGACGCGCGT GGAAAAGGAGTTCTGCTCAAGCGTGCTGAGTGCTTTACGCAAGCGTGCCG TGCAGTGTTAGCAGCAAGCGGC
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Coding sequence (CDS) from alignment at H-elongata_contig184973:34..1105-

>mRNA_H-elongata_contig184973.4993.1 ID=mRNA_H-elongata_contig184973.4993.1|Name=mRNA_H-elongata_contig184973.4993.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig184973:34..1105- (Himanthalia elongata Himel1 dioecious)
GCTGTGTCGGCTCAGGTGCTGACCGTGGCGAAGCATTTTCCCTACAGGTT
TTGCGAGTTCATCCTTGATACAGCGCGTGCTGTTGTGCAGCTTCACAACC
AGCATGCACCGACAACGACACCCCTCCCTGGGTATCACACGTTGTTTCAG
AAGAAAGAAGTCGCAAATAGTCAGGATGGTCTATCCGGAGTGTTCCACGC
CAACGGGATCGCTTGCGTGGCGATGGAGGACGTTGCTGACAGAGGCGACC
TGATCGGTACTCGGCTGTGTCGGCTCAGGTGCTGACCGTGGCGAAGCATT
TTCCCTACAGGTTTTGCGAGTTCATCCTTGATACAGCGCGTGCTGTTGTG
CAGCTTCACAACCAGCATGCACCGACAACGACACCCCTCCCTGGGTATCA
CACGTTGTTTCAGAAGAAAGAAGTCGCAAATAGTCAGGATGGTCTATCCG
GAGTGTTCCACGCCAACGGGATCGCTTGCGTGGCGATGGAGGACGTTGCT
GACAGAGGCGACCTGATCGGTACTCGACACCCTCGTCTATGCGCGTCAAA
ATGCTGTTCAATTCGCACCTGTTTCCAGGCTGCGGCAATGTTAGACGCGC
GTGGAAAAGGAGTTCTGCTCAAGCGTGCTGAGTGCTTTACGCAAGCGTGC
CGTGCAGTGTTAGCAGCAAGCGGCACACCCTCGTCTATGCGCGTCAAAAT
GCTGTTCAATTCGCACCTGTTTCCAGGCTGCGGCAATGTTAGACGCGCGT
GGAAAAGGAGTTCTGCTCAAGCGTGCTGAGTGCTTTACGCAAGCGTGCCG
TGCAGTGTTAGCAGCAAGCGGC
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