mRNA_H-elongata_contig184949.4991.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig184949.4991.1
Unique NamemRNA_H-elongata_contig184949.4991.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig184949.4991.1 vs. uniprot
Match: D7FVN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVN9_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 1.490e-48
Identity = 84/104 (80.77%), Postives = 92/104 (88.46%), Query Frame = 1
Query:    1 VSKSTGRIKWSEVTYLEKGGVFTHGSISELRRLKGWEGPRVLYFGDSLWADLVEARKLHGWTTGAIIYDVELELEIMDTAEYRRLAHRAHALEVLLPQVQEVVE 312
            VSK  GRIKWSEVT+L+KGGVFTHGSI+ELRRLKGWEGP VLYFGDSLWADLVEARKLHGWTTGAIIYDVELELE M +  Y +L+ RA ALE+LLP VQ+V E
Sbjct:  402 VSKRDGRIKWSEVTHLKKGGVFTHGSIAELRRLKGWEGPSVLYFGDSLWADLVEARKLHGWTTGAIIYDVELELEKMSSPMYHQLSKRALALEILLPLVQDVAE 505          
BLAST of mRNA_H-elongata_contig184949.4991.1 vs. uniprot
Match: K8YVS7_NANGC (5-nucleotidase domain-containing n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YVS7_NANGC)

HSP 1 Score: 119 bits (299), Expect = 1.790e-30
Identity = 55/104 (52.88%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    1 VSKSTGRIKWSEVTYLEKGGVFTHGSISELRRLKGWEGPRVLYFGDSLWADLVEARKLHGWTTGAIIYDVELELEIMDTAEYRRLAHRAHALEVLLPQVQEVVE 312
            V K TG+I+W+EVT LEKG V++HGS+  L +L GW+GPRVLY GD +WADLV  R+  GW TGA+I ++E EL +  + +YR+ AH+A  +  LL  VQE +E
Sbjct:  224 VDKRTGKIRWTEVTTLEKGKVYSHGSLEGLTKLTGWQGPRVLYIGDQIWADLVGGRRNQGWRTGAVIRELEYELVVQQSKKYRQYAHQAVTVTELLRLVQEEME 327          
BLAST of mRNA_H-elongata_contig184949.4991.1 vs. uniprot
Match: A0A4D9D0E6_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0E6_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.850e-29
Identity = 55/104 (52.88%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    1 VSKSTGRIKWSEVTYLEKGGVFTHGSISELRRLKGWEGPRVLYFGDSLWADLVEARKLHGWTTGAIIYDVELELEIMDTAEYRRLAHRAHALEVLLPQVQEVVE 312
            V K TG+I+W+EVT LEKG V++HGS+  L +L GW+GPRVLY GD +WADLV  R+  GW TGA+I ++E EL +  + +YR+ AH+A  +  LL  VQE +E
Sbjct:  281 VDKRTGKIRWTEVTTLEKGKVYSHGSLEGLTKLTGWQGPRVLYIGDQIWADLVGGRRNQGWRTGAVIRELEYELVVQQSKKYRQYAHQAVTVTELLRLVQEEME 384          
BLAST of mRNA_H-elongata_contig184949.4991.1 vs. uniprot
Match: A0A7S1UIE1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIE1_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.240e-28
Identity = 53/95 (55.79%), Postives = 68/95 (71.58%), Query Frame = 1
Query:   16 GRIKWSEVTYLEKGGVFTHGSISELRRLKGWEGPRVLYFGDSLWADLVEARKLHGWTTGAIIYDVELELEIMDTAEYRRLAHRAHALEVLLPQVQ 300
            GR+ W  VT LEKG V+THGS++EL RL GW GP VLYFGDSLWADLV+AR+LHGWTT A++ +VE ++ +    EY  + ++   L  LL  VQ
Sbjct:  277 GRVTWEAVTELEKGCVYTHGSLAELARLTGWNGPNVLYFGDSLWADLVDARRLHGWTTAAVVAEVEEDIRVQHQDEYAYVLNKRGLLRELLRLVQ 371          
BLAST of mRNA_H-elongata_contig184949.4991.1 vs. uniprot
Match: W4FHV2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FHV2_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 3.120e-21
Identity = 48/95 (50.53%), Postives = 68/95 (71.58%), Query Frame = 1
Query:   19 RIKWSEVTYLEKGGVFTHGSISELRRLKGWEGPRVLYFGDSLWADLVEARKLHGWTTGAIIYDVELELEIMDTAEYRRLAHRAHALEVLLPQVQE 303
            +++W  VT L    V+T GS+ +L  LKGW G +VLY GDSL+ADLVE  ++ GW TGAII ++E E++I ++  Y+RLA +  +LEVLL Q+QE
Sbjct:  315 QVQWQAVTDLLPHHVYTQGSLRQLIALKGWRGGKVLYIGDSLFADLVEPNRILGWRTGAIIRELEDEIQIQNSPAYQRLAFQHASLEVLLRQLQE 409          
BLAST of mRNA_H-elongata_contig184949.4991.1 vs. uniprot
Match: H3HDU7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HDU7_PHYRM)

HSP 1 Score: 94.4 bits (233), Expect = 2.020e-20
Identity = 43/94 (45.74%), Postives = 65/94 (69.15%), Query Frame = 1
Query:   19 RIKWSEVTYLEKGGVFTHGSISELRRLKGWEGPRVLYFGDSLWADLVEARKLHGWTTGAIIYDVELELEIMDTAEYRRLAHRAHALEVLLPQVQ 300
            +++W  V  LE+G V+T GS+  L +L GW G RVLY GD+L++DLVE  + +GW TGAII ++E E+++  T EY+RLA + +  E L+  +Q
Sbjct:  321 QVQWHAVRALERGDVYTQGSLYHLSKLTGWVGSRVLYIGDNLFSDLVEPSRANGWRTGAIIRELEDEMKVQRTPEYQRLAFQINKFEELMRNIQ 414          
BLAST of mRNA_H-elongata_contig184949.4991.1 vs. uniprot
Match: D0NVX5_PHYIT (5'-nucleotidase domain-containing protein, putative n=10 Tax=Phytophthora TaxID=4783 RepID=D0NVX5_PHYIT)

HSP 1 Score: 92.4 bits (228), Expect = 9.830e-20
Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = 1
Query:   19 RIKWSEVTYLEKGGVFTHGSISELRRLKGWEGPRVLYFGDSLWADLVEARKLHGWTTGAIIYDVELELEIMDTAEYRRLAHRAHALEVLLPQVQ 300
            +++W  V  L +G V+T GS+ +L +L GW G RVLY GD+L++DLVE  + +GW TGAII ++E E+ +  T EY+RLA +   +E L+  +Q
Sbjct:  311 QVQWQAVRALHRGEVYTQGSVYQLSKLTGWVGSRVLYIGDNLFSDLVEPSRANGWRTGAIIRELEDEMNVHRTPEYQRLAFQISKIEELMRSIQ 404          
BLAST of mRNA_H-elongata_contig184949.4991.1 vs. uniprot
Match: A0A7R9UAG4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAG4_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.750e-19
Identity = 46/101 (45.54%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 VSKSTGRIKWSEVTYLEKGGVFTHGSISELRRLKGW---------EGPRVLYFGDSLWADLVEARKLHGWTTGAIIYDVELELEIMDTAEYRRLAHRAHAL 276
            VS  TGR+K+  +T LEK  V+  GSI+E+ RLK W         +G R+LY GDSL+ADLV+AR+L+GW TGAII +V  E  +  +  +R+  +  H L
Sbjct:  380 VSVRTGRVKFKPITSLEKDEVYCDGSIAEMMRLKNWGYDPKDGTFDGSRILYLGDSLFADLVDARRLYGWVTGAIIREVRHEAYVQSSPAWRQAKYITHTL 480          
BLAST of mRNA_H-elongata_contig184949.4991.1 vs. uniprot
Match: A0A485KJC8_9STRA (Aste57867_8102 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KJC8_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.800e-19
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 1
Query:   19 RIKWSEVTYLEKGGVFTHGSISELRRLKGWEGPRVLYFGDSLWADLVEARKLHGWTTGAIIYDVELELEIMDTAEYRRLAHRAHALEVLLPQVQEV 306
            +++W  V+ L    V+T GS+ +L  LKGW G +VLY GDSL+ADLVE  ++ GW TGAII ++E E++I  +  Y++LA +  ALE LL ++Q+V
Sbjct:  318 QVQWQAVSELLPHNVYTQGSLRQLIALKGWVGGKVLYIGDSLFADLVEPSRILGWRTGAIIRELEDEIKIQSSPAYQKLAFQHAALEDLLRKMQDV 413          
BLAST of mRNA_H-elongata_contig184949.4991.1 vs. uniprot
Match: A0A553NPM0_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553NPM0_TIGCA)

HSP 1 Score: 90.1 bits (222), Expect = 6.770e-19
Identity = 40/94 (42.55%), Postives = 65/94 (69.15%), Query Frame = 1
Query:   22 IKWSEVTYLEKGGVFTHGSISELRRLKGWEGPRVLYFGDSLWADLVEARKLHGWTTGAIIYDVELELEIMDTAEYRRLAHRAHALEVLLPQVQE 303
            + W +V+ LE+G +++ G+I+EL+ L GWEG RVLYFGD  +ADL +    HGW TGAII ++E E+ +M+  +Y+   + A  L++L+ + Q+
Sbjct:  341 LSWKQVSRLERGRIYSRGNINELQDLTGWEGDRVLYFGDHPYADLADLSLNHGWRTGAIIKEIEEEVSVMNLEQYKWGMNWATVLQILIDENQD 434          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184949.4991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVN9_ECTSI1.490e-4880.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
K8YVS7_NANGC1.790e-3052.885-nucleotidase domain-containing n=1 Tax=Nannochlo... [more]
A0A4D9D0E6_9STRA1.850e-2952.88Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S1UIE1_9STRA2.240e-2855.79Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
W4FHV2_9STRA3.120e-2150.53Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
H3HDU7_PHYRM2.020e-2045.74Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
D0NVX5_PHYIT9.830e-2044.685'-nucleotidase domain-containing protein, putativ... [more]
A0A7R9UAG4_9STRA3.750e-1945.54Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A485KJC8_9STRA4.800e-1946.88Aste57867_8102 protein n=1 Tax=Aphanomyces stellat... [more]
A0A553NPM0_TIGCA6.770e-1942.55Uncharacterized protein n=1 Tax=Tigriopus californ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig184949contigH-elongata_contig184949:9..1117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.1
Seed ortholog evalue3.4e-41
Seed eggNOG ortholog2880.D7FVN9
Preferred nameNT5DC3
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008252,GO:0008253,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0032991,GO:0042578,GO:0043235,GO:0044237,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.5'-nucleotidase activity
EggNOG OGsKOG2469@1,KOG2470@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size312
Cds size312
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig184949.4991.1prot_H-elongata_contig184949.4991.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig184949 9..1117 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930058.640577-CDS-H-elongata_contig184949:8..801622930058.640577-CDS-H-elongata_contig184949:8..80Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184949 9..80 -
1691679264.728093-CDS-H-elongata_contig184949:8..801691679264.728093-CDS-H-elongata_contig184949:8..80Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184949 9..80 -
1622930058.6551714-CDS-H-elongata_contig184949:481..6181622930058.6551714-CDS-H-elongata_contig184949:481..618Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184949 482..618 -
1691679264.7395082-CDS-H-elongata_contig184949:481..6181691679264.7395082-CDS-H-elongata_contig184949:481..618Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184949 482..618 -
1622930058.67135-CDS-H-elongata_contig184949:1014..11171622930058.67135-CDS-H-elongata_contig184949:1014..1117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184949 1015..1117 -
1691679264.7574263-CDS-H-elongata_contig184949:1014..11171691679264.7574263-CDS-H-elongata_contig184949:1014..1117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184949 1015..1117 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig184949.4991.1

>prot_H-elongata_contig184949.4991.1 ID=prot_H-elongata_contig184949.4991.1|Name=mRNA_H-elongata_contig184949.4991.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
VSKSTGRIKWSEVTYLEKGGVFTHGSISELRRLKGWEGPRVLYFGDSLWA
DLVEARKLHGWTTGAIIYDVELELEIMDTAEYRRLAHRAHALEVLLPQVQ
EVVE
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mRNA from alignment at H-elongata_contig184949:9..1117-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig184949.4991.1 ID=mRNA_H-elongata_contig184949.4991.1|Name=mRNA_H-elongata_contig184949.4991.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1109bp|location=Sequence derived from alignment at H-elongata_contig184949:9..1117- (Himanthalia elongata Himel1 dioecious)
GTTTCCAAGTCAACCGGGCGAATCAAGTGGTCGGAGGTGACCTATCTGGA AAAAGGAGGCGTTTTTACCCATGGGTCTATTTCTGAGCTCAGGCGACTTA AGGGTGAGCTCCGCTCTCTCTCTCTCTTTTTCCCCCTATCTTTCTTTCCC TCTCTCGAAAGACGAAATCGATGGAACCGCCCGGGGAGTTGAAGCCCGGC TGCTGGTGCTGTGCCCCTAACATATTAGGCTAACACGCAGCCGGTCACCT TCGCATCGCCGCCTCCGAGCTATCACGTTTCGTGTTTCAAACTGCTTCGG GTGACCGGGAGAGACAAACATCAGTGTCGTGTCATTTTTTTTTTTTATCA TCGCCAAGTAGATCTGATCTTTCGCGTGAGAGAAGTTTATCCCTCATCTC TTGTCTGAGATCACGCCCCAACCCGCCGTCGCTGCGTTCGTCTAGTTTTT CACTGACATGGTGTCTATGTTTGTTTGTTTTTCGTCGTGGTGAGTGCAGG CTGGGAGGGGCCTAGAGTGCTCTATTTCGGGGACTCACTGTGGGCGGATC TGGTGGAGGCACGAAAGCTGCACGGCTGGACGACGGGGGCCATAATTTAC GACGTGGAGCTAGAGCTAGAGATCATGGATACAGCGGTGAGGCCGATATG CGAGAGGAGTTTTCACAGGACCAATCGGTCGTGTCCCATCCAGTCCAGTC CCGTCTCTTGCCGCAGGAGATACCTCGTTGCGCCCATGTCTTGGTGCTGC GAGACCGTTTATCAGCGGGGCGGGTGGAGGGGACAATGGGGTAGAGCGTT GTGTAGGCAAGAGGTTGCAATGTTTTGTTTACTTACGATCGCTCTAGAGC CTTGCTCTATGTTCTGCTGTCTCGTGGTGGCTGCTGTCAAATACCCCTCT CTTTGTGTCTTTTTTTTTTTGTGCGAGCGAGTCTCCAGCGCATTATATGC CCCGTGTTTTTTTGTTATACTGTACGTCTCTCTTTATCTCGCCCTCTGCC GTTACAATGCCGTTAAAATTCGGTTGCTGTTCCGCAGGAATACCGGAGGT TAGCACACCGCGCGCATGCCTTGGAGGTACTGCTCCCTCAAGTCCAGGAA GTGGTGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig184949:9..1117-

>mRNA_H-elongata_contig184949.4991.1 ID=mRNA_H-elongata_contig184949.4991.1|Name=mRNA_H-elongata_contig184949.4991.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig184949:9..1117- (Himanthalia elongata Himel1 dioecious)
GTTTCCAAGTCAACCGGGCGAATCAAGTGGTCGGAGGTGACCTATCTGGA
AAAAGGAGGCGTTTTTACCCATGGGTCTATTTCTGAGCTCAGGCGACTTA
AGGGTTTCCAAGTCAACCGGGCGAATCAAGTGGTCGGAGGTGACCTATCT
GGAAAAAGGAGGCGTTTTTACCCATGGGTCTATTTCTGAGCTCAGGCGAC
TTAAGGGCTGGGAGGGGCCTAGAGTGCTCTATTTCGGGGACTCACTGTGG
GCGGATCTGGTGGAGGCACGAAAGCTGCACGGCTGGACGACGGGGGCCAT
AATTTACGACGTGGAGCTAGAGCTAGAGATCATGGATACAGCGGCTGGGA
GGGGCCTAGAGTGCTCTATTTCGGGGACTCACTGTGGGCGGATCTGGTGG
AGGCACGAAAGCTGCACGGCTGGACGACGGGGGCCATAATTTACGACGTG
GAGCTAGAGCTAGAGATCATGGATACAGCGGAATACCGGAGGTTAGCACA
CCGCGCGCATGCCTTGGAGGTACTGCTCCCTCAAGTCCAGGAAGTGGTGG
AGGAATACCGGAGGTTAGCACACCGCGCGCATGCCTTGGAGGTACTGCTC
CCTCAAGTCCAGGAAGTGGTGGAG
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