mRNA_H-elongata_contig18489.4988.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18489.4988.1
Unique NamemRNA_H-elongata_contig18489.4988.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig18489.4988.1 vs. uniprot
Match: D7FHF4_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF4_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 5.350e-11
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:  595 EKMEA-QAGLLRSLSMGLHPVLLVEPLTTVREVTKWYTLQLEKAFKHFKRRK 747
            EK EA +  LLR L++GLHPVLLVEPLTTVREVTKWYT+QLEK+FK ++ RK
Sbjct: 1127 EKAEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQLEKSFKSYRHRK 1178
[Close]
BLAST of mRNA_H-elongata_contig18489.4988.1 vs. uniprot
Match: A0A6H5K1B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B4_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.230e-6
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:  619 LLRSLSMGLHPVLLVEPLTTVREVTKWYTLQLEKA 723
            LLR L++GLHPVLLVEPLTTVREVTKWYT+Q E+ 
Sbjct:  900 LLRKLAVGLHPVLLVEPLTTVREVTKWYTVQEEEG 934
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18489.4988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHF4_ECTSI5.350e-1173.08Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5K1B4_9PHAE2.230e-680.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18489contigH-elongata_contig18489:4082..5990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size778
Cds size777
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930058.3915935-CDS-H-elongata_contig18489:4081..47921622930058.3915935-CDS-H-elongata_contig18489:4081..4792Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18489 4082..4792 +
1691679264.617042-CDS-H-elongata_contig18489:4081..47921691679264.617042-CDS-H-elongata_contig18489:4081..4792Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18489 4082..4792 +
1622930058.4120867-CDS-H-elongata_contig18489:5924..59901622930058.4120867-CDS-H-elongata_contig18489:5924..5990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18489 5925..5990 +
1691679264.6250534-CDS-H-elongata_contig18489:5924..59901691679264.6250534-CDS-H-elongata_contig18489:5924..5990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18489 5925..5990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18489.4988.1prot_H-elongata_contig18489.4988.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18489 4082..5990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18489.4988.1

>prot_H-elongata_contig18489.4988.1 ID=prot_H-elongata_contig18489.4988.1|Name=mRNA_H-elongata_contig18489.4988.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=259bp
LRPRSRIGSRTSGPNRHASSRSSKPRAGNCRIGTAILEDVKDEPLSSGSG
GHGSDHGSAAVSPSSAAAASATASLDVEASEKERSSEQRKAGGRGERIAT
PEEKRRDSRKSESGSNSASGGGSKEGGEACGTEGRDSSFPLDDPTSAATR
TSDVTKKDKNSLPRRCLSASLIGVSGLKFTMGAGKEAGAEEEEAAAAAEK
MEAQAGLLRSLSMGLHPVLLVEPLTTVREVTKWYTLQLEKAFKHFKRRKR
QEEESRFR*
back to top

mRNA from alignment at H-elongata_contig18489:4082..5990+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18489.4988.1 ID=mRNA_H-elongata_contig18489.4988.1|Name=mRNA_H-elongata_contig18489.4988.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1909bp|location=Sequence derived from alignment at H-elongata_contig18489:4082..5990+ (Himanthalia elongata Himel1 dioecious)
CTCCGCCCCCGTTCCCGTATTGGTTCCCGCACCTCTGGGCCCAACAGACA
CGCCTCCTCCCGATCCTCAAAACCTCGTGCTGGAAATTGTCGAATTGGGA
CAGCGATCCTGGAGGATGTTAAGGATGAACCGTTGTCGTCAGGGAGTGGG
GGACACGGTAGTGACCACGGGAGCGCGGCTGTCTCCCCAAGTTCTGCTGC
TGCTGCTTCTGCTACTGCCTCCCTCGATGTCGAAGCCAGCGAGAAAGAGA
GGAGCTCTGAGCAAAGAAAGGCAGGAGGACGAGGAGAACGTATAGCAACA
CCAGAAGAGAAAAGGCGCGATAGCCGCAAGAGCGAAAGCGGGAGCAACAG
CGCTAGCGGTGGTGGTTCAAAGGAGGGCGGCGAGGCATGTGGTACAGAGG
GGCGCGATTCTTCATTCCCGCTCGATGACCCGACCTCCGCCGCGACCCGA
ACGTCCGACGTCACGAAGAAAGACAAGAATTCCCTCCCGCGGCGGTGTTT
ATCGGCGTCATTGATTGGGGTTTCCGGTTTGAAGTTCACGATGGGAGCGG
GAAAAGAAGCCGGGGCGGAGGAGGAGGAGGCGGCCGCGGCGGCGGAGAAG
ATGGAGGCGCAGGCCGGATTGCTGAGGTCGCTGTCGATGGGGCTGCACCC
GGTGTTGCTCGTGGAGCCTCTGACGACGGTCCGGGAAGTCACCAAGTGGT
ACACGCTGCAGGTTTGTTTTTGTTTTTGTTACCTGTTTGCTGCACTTTTC
GTCTTGTTGGTTGGTTAGTTGGTTAGTTTAGCTCTTTTGAGGGGGTAGCG
CAGGGGGAGGAGCGTGTATTTTCACACCTCGAACGATTATTGTTACAGTG
TGCCATAGAAGTCGGTGAAAATGGGCTTGAAGTAACACGCTTTTTCTTGT
TTTCTTGGGAGTTTTTTGGGGGTTTTTTTTCCCTTATTTTTTTTTATATC
ATATCAAAAACTTAACAACCCCACTTACGACTTGTTGTGGACGTCAACTA
GAGTTGCGTCGAGGAATCTGGCCGACTGGCCGACCTAACCTATTCCGTTT
ATTAAGAGGACGTAGACGTGGTGACAAAAGGTAGTACCGCTATTAATCCT
TTACCGGAGTAACTTGGTGTGAAATATTTTGTTGCCGATGAAGTGATTCC
CAAGTTTCCAATTTTTTTTCAACAGAGGAGAATGTCTTTGGGGGAGGGGG
GATAAGGTTGATGACGGGTGTAGAGGTGTAGTTTCCGATTTTGGATAATT
TGGGGATTCCAAAGCGGCTCATTAAGAACGCAAGAGAGTCCGAGTTTGCG
GCCAATCATTTACGGAAGAAAAACAATGGTCTATAGGGAAAGGAAAGGAA
GGAAATATTGTGTGTGTGGTTTTGGAGGAAGGGAAGGGAAGGGGGGTCAA
CCCTGCTTGACGGAACGGTTTTATCGTCGAAATTGAACCATATAACGCTA
GGTATAAATGTCAGCCGGGCTGGAGATGTAGATGGTTTATTTCTGACTAC
ATGATTTTTTTATGGAACTTGCGGAAACCCTTTTTTCTTTGCGATATGCC
TCGCAAAAATTGTCTCGCGTTATGCCTTGTAATGTGGCTTTGAAGTGCCT
CGCAATATGCCCCTCAACATGCCGCATCCGACCTTTCGCCAAGAAAAAAA
AAAGGCCGGGGTCAAAAAAGCTGTATTTTTAGTAACTTATGACAGAAAAC
CCGCTCCGTTGGGGTGGGGGCTTGGATGGCGCGTTGGACGAAGCCTTGAT
ACGATTTGATGTGGATGCGGTCTTCGCACCTGTTGCATGATGCTCTCTGA
TATTTGAACGTTATCTCTTGGTCGCTCTTGTTTTTTTTTGCAGCTCGAGA
AGGCGTTCAAGCACTTCAAGCGCAGAAAGCGTCAGGAGGAAGAATCCCGA
TTTCGGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig18489:4082..5990+

>mRNA_H-elongata_contig18489.4988.1 ID=mRNA_H-elongata_contig18489.4988.1|Name=mRNA_H-elongata_contig18489.4988.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1554bp|location=Sequence derived from alignment at H-elongata_contig18489:4082..5990+ (Himanthalia elongata Himel1 dioecious)
CTCCGCCCCCGTTCCCGTATTGGTTCCCGCACCTCTGGGCCCAACAGACA
CGCCTCCTCCCGATCCTCAAAACCTCGTGCTGGAAATTGTCGAATTGGGA
CAGCGATCCTGGAGGATGTTAAGGATGAACCGTTGTCGTCAGGGAGTGGG
GGACACGGTAGTGACCACGGGAGCGCGGCTGTCTCCCCAAGTTCTGCTGC
TGCTGCTTCTGCTACTGCCTCCCTCGATGTCGAAGCCAGCGAGAAAGAGA
GGAGCTCTGAGCAAAGAAAGGCAGGAGGACGAGGAGAACGTATAGCAACA
CCAGAAGAGAAAAGGCGCGATAGCCGCAAGAGCGAAAGCGGGAGCAACAG
CGCTAGCGGTGGTGGTTCAAAGGAGGGCGGCGAGGCATGTGGTACAGAGG
GGCGCGATTCTTCATTCCCGCTCGATGACCCGACCTCCGCCGCGACCCGA
ACGTCCGACGTCACGAAGAAAGACAAGAATTCCCTCCCGCGGCGGTGTTT
ATCGGCGTCATTGATTGGGGTTTCCGGTTTGAAGTTCACGATGGGAGCGG
GAAAAGAAGCCGGGGCGGAGGAGGAGGAGGCGGCCGCGGCGGCGGAGAAG
ATGGAGGCGCAGGCCGGATTGCTGAGGTCGCTGTCGATGGGGCTGCACCC
GGTGTTGCTCGTGGAGCCTCTGACGACGGTCCGGGAAGTCACCAAGTGGT
ACACGCTGCAGCTCCGCCCCCGTTCCCGTATTGGTTCCCGCACCTCTGGG
CCCAACAGACACGCCTCCTCCCGATCCTCAAAACCTCGTGCTGGAAATTG
TCGAATTGGGACAGCGATCCTGGAGGATGTTAAGGATGAACCGTTGTCGT
CAGGGAGTGGGGGACACGGTAGTGACCACGGGAGCGCGGCTGTCTCCCCA
AGTTCTGCTGCTGCTGCTTCTGCTACTGCCTCCCTCGATGTCGAAGCCAG
CGAGAAAGAGAGGAGCTCTGAGCAAAGAAAGGCAGGAGGACGAGGAGAAC
GTATAGCAACACCAGAAGAGAAAAGGCGCGATAGCCGCAAGAGCGAAAGC
GGGAGCAACAGCGCTAGCGGTGGTGGTTCAAAGGAGGGCGGCGAGGCATG
TGGTACAGAGGGGCGCGATTCTTCATTCCCGCTCGATGACCCGACCTCCG
CCGCGACCCGAACGTCCGACGTCACGAAGAAAGACAAGAATTCCCTCCCG
CGGCGGTGTTTATCGGCGTCATTGATTGGGGTTTCCGGTTTGAAGTTCAC
GATGGGAGCGGGAAAAGAAGCCGGGGCGGAGGAGGAGGAGGCGGCCGCGG
CGGCGGAGAAGATGGAGGCGCAGGCCGGATTGCTGAGGTCGCTGTCGATG
GGGCTGCACCCGGTGTTGCTCGTGGAGCCTCTGACGACGGTCCGGGAAGT
CACCAAGTGGTACACGCTGCAGCTCGAGAAGGCGTTCAAGCACTTCAAGC
GCAGAAAGCGTCAGGAGGAAGAATCCCGATTTCGGTAACTCGAGAAGGCG
TTCAAGCACTTCAAGCGCAGAAAGCGTCAGGAGGAAGAATCCCGATTTCG
GTAA
back to top