mRNA_H-elongata_contig18489.4987.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18489.4987.1
Unique NamemRNA_H-elongata_contig18489.4987.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18489.4987.1 vs. uniprot
Match: D7G7E7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E7_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 5.650e-18
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:   13 KVLVQLRHVYGQDVGLFEEFSRELLAPLLRLVPSGLSPPGAVRLAAAALVSLRENSVACLLR 198
            +VLV+LRHVY  D  L+EEFSRELL+P+LRLVPS LS   AVRL++  +VSLREN VACL+R
Sbjct:   34 EVLVRLRHVYDHDAELYEEFSRELLSPVLRLVPSALSSLDAVRLSSRVVVSLRENCVACLVR 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18489.4987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7E7_ECTSI5.650e-1867.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18489contigH-elongata_contig18489:54..257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930058.4623773-CDS-H-elongata_contig18489:53..2571622930058.4623773-CDS-H-elongata_contig18489:53..257Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18489 54..257 +
1691679264.634371-CDS-H-elongata_contig18489:53..2571691679264.634371-CDS-H-elongata_contig18489:53..257Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18489 54..257 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18489.4987.1prot_H-elongata_contig18489.4987.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18489 54..257 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18489.4987.1

>prot_H-elongata_contig18489.4987.1 ID=prot_H-elongata_contig18489.4987.1|Name=mRNA_H-elongata_contig18489.4987.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
PAGGKVLVQLRHVYGQDVGLFEEFSRELLAPLLRLVPSGLSPPGAVRLAA
AALVSLRENSVACLLRHV
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mRNA from alignment at H-elongata_contig18489:54..257+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18489.4987.1 ID=mRNA_H-elongata_contig18489.4987.1|Name=mRNA_H-elongata_contig18489.4987.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig18489:54..257+ (Himanthalia elongata Himel1 dioecious)
CCGGCGGGTGGGAAGGTTCTGGTACAGCTTCGGCACGTGTACGGTCAAGA
CGTGGGACTTTTCGAGGAATTTTCCCGGGAGCTTCTTGCGCCCCTGCTGC
GCCTTGTCCCGTCTGGGCTCTCCCCGCCGGGGGCTGTTCGGCTGGCGGCG
GCGGCTCTCGTTTCCCTTCGAGAGAACAGCGTGGCGTGCTTGCTTCGACA
TGTG
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Coding sequence (CDS) from alignment at H-elongata_contig18489:54..257+

>mRNA_H-elongata_contig18489.4987.1 ID=mRNA_H-elongata_contig18489.4987.1|Name=mRNA_H-elongata_contig18489.4987.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig18489:54..257+ (Himanthalia elongata Himel1 dioecious)
CCGGCGGGTGGGAAGGTTCTGGTACAGCTTCGGCACGTGTACGGTCAAGA
CGTGGGACTTTTCGAGGAATTTTCCCGGGAGCTTCTTGCGCCCCTGCTGC
GCCTTGTCCCGTCTGGGCTCTCCCCGCCGGGGGCTGTTCGGCTGGCGGCG
GCGGCTCTCGTTTCCCTTCGAGAGAACAGCGTGGCGTGCTTGCTTCGACA
TGTGCCGGCGGGTGGGAAGGTTCTGGTACAGCTTCGGCACGTGTACGGTC
AAGACGTGGGACTTTTCGAGGAATTTTCCCGGGAGCTTCTTGCGCCCCTG
CTGCGCCTTGTCCCGTCTGGGCTCTCCCCGCCGGGGGCTGTTCGGCTGGC
GGCGGCGGCTCTCGTTTCCCTTCGAGAGAACAGCGTGGCGTGCTTGCTTC
GACATGTG
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