mRNA_H-elongata_contig184736.4979.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig184736.4979.1
Unique NamemRNA_H-elongata_contig184736.4979.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig184736.4979.1 vs. uniprot
Match: D7FK97_ECTSI (Zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK97_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 5.360e-11
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 IDVEGEKFRVLLGTNPGEVEEWRASRRKLWPTTANVAR 114
            IDVEG+KFRVLLGT+P EV EWRA RRK WPT  N AR
Sbjct:  132 IDVEGKKFRVLLGTSPDEVAEWRAERRKRWPTDENKAR 169
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BLAST of mRNA_H-elongata_contig184736.4979.1 vs. uniprot
Match: A0A6H5JLR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLR5_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 5.360e-11
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 IDVEGEKFRVLLGTNPGEVEEWRASRRKLWPTTANVAR 114
            IDVEG+KFRVLLGT+P EV EWRA RRK WPT  N AR
Sbjct:  115 IDVEGKKFRVLLGTSPDEVAEWRAERRKRWPTDENKAR 152
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BLAST of mRNA_H-elongata_contig184736.4979.1 vs. uniprot
Match: A0A024T851_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T851_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.490e-7
Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 IDVEGEKFRVLLGTNPGEVEEWRASRRKLWPTTANVAR 114
            I+VEG+KF+VL+G +P E+ +WR  RRK WP+ +NV R
Sbjct:  290 IEVEGQKFQVLVGNSPEEITKWREERRKKWPSESNVKR 327
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BLAST of mRNA_H-elongata_contig184736.4979.1 vs. uniprot
Match: W4FQN8_9STRA (C2H2-type domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FQN8_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.390e-7
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 IDVEGEKFRVLLGTNPGEVEEWRASRRKLWPTTANVAR 114
            I+VEG+KF VL+G +P ++ +WR  RRK WP+ ANV R
Sbjct:  288 IEVEGQKFHVLVGNSPEDITKWREERRKKWPSDANVKR 325
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BLAST of mRNA_H-elongata_contig184736.4979.1 vs. uniprot
Match: A0A8K1CJ96_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJ96_PYTOL)

HSP 1 Score: 53.9 bits (128), Expect = 3.410e-7
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 IDVEGEKFRVLLGTNPGEVEEWRASRRKLWPTTANVARLGVPG 129
            IDVEG+KF VL+G +P ++ +WRA RRK WP+ A V +    G
Sbjct:  449 IDVEGQKFMVLVGNSPEDIAKWRAERRKRWPSNALVNQKAAAG 491
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BLAST of mRNA_H-elongata_contig184736.4979.1 vs. uniprot
Match: W4FR42_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FR42_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.410e-7
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 IDVEGEKFRVLLGTNPGEVEEWRASRRKLWPTTANVAR 114
            I+VEG+KF VL+G +P ++ +WR  RRK WP+ ANV R
Sbjct:  288 IEVEGQKFHVLVGNSPEDITKWREERRKKWPSDANVKR 325
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BLAST of mRNA_H-elongata_contig184736.4979.1 vs. uniprot
Match: A0A1V9Z0Q3_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z0Q3_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 4.660e-7
Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 IDVEGEKFRVLLGTNPGEVEEWRASRRKLWPTTANVAR 114
            I+VEG+KF VL+G +P E+ +WR  RRK WP+TA V R
Sbjct:  259 IEVEGQKFTVLVGNSPEEIAKWREERRKKWPSTAVVKR 296
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BLAST of mRNA_H-elongata_contig184736.4979.1 vs. uniprot
Match: A0A2D4C9T5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9T5_PYTIN)

HSP 1 Score: 53.1 bits (126), Expect = 5.530e-7
Identity = 20/34 (58.82%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 IDVEGEKFRVLLGTNPGEVEEWRASRRKLWPTTA 102
            I+VEG++F VL+G +P ++E+WRA RRK WP+TA
Sbjct:   61 IEVEGQRFMVLVGNSPEDIEKWRAERRKRWPSTA 94
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BLAST of mRNA_H-elongata_contig184736.4979.1 vs. uniprot
Match: A0A7S2RYE8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYE8_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 6.370e-7
Identity = 21/33 (63.64%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   16 EKFRVLLGTNPGEVEEWRASRRKLWPTTANVAR 114
            +KFRVL+GT+P EV +WRA RRK WP+  N+AR
Sbjct:  125 QKFRVLMGTSPEEVAQWRAERRKNWPSKTNLAR 157
[Close]
BLAST of mRNA_H-elongata_contig184736.4979.1 vs. uniprot
Match: A0A1W0ABE8_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ABE8_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 8.710e-7
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 IDVEGEKFRVLLGTNPGEVEEWRASRRKLWPTTANVAR 114
            IDVEG+KF VL+G +P ++ +WR  RRK WP+T+ V R
Sbjct:  725 IDVEGQKFTVLVGNSPEDIAKWREERRKKWPSTSVVKR 762
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184736.4979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FK97_ECTSI5.360e-1176.32Zinc finger protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5JLR5_9PHAE5.360e-1176.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024T851_9STRA2.490e-755.26Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4FQN8_9STRA3.390e-755.26C2H2-type domain-containing protein n=1 Tax=Aphano... [more]
A0A8K1CJ96_PYTOL3.410e-751.16Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W4FR42_9STRA3.410e-755.26Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A1V9Z0Q3_9STRA4.660e-757.89Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A2D4C9T5_PYTIN5.530e-758.82Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7S2RYE8_9STRA6.370e-763.64Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A1W0ABE8_9STRA8.710e-755.26Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig184736contigH-elongata_contig184736:69..200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue2.1e-08
Seed eggNOG ortholog2880.D7FK97
Preferred nameZC3H4
KEGG koko:K20915
KEGG Pathwayko04621,map04621
GOsGO:0000122,GO:0000785,GO:0000976,GO:0000977,GO:0000981,GO:0001012,GO:0001067,GO:0001161,GO:0001162,GO:0001227,GO:0001776,GO:0002260,GO:0002376,GO:0002682,GO:0002683,GO:0002694,GO:0002695,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006359,GO:0006366,GO:0006383,GO:0006401,GO:0006725,GO:0006807,GO:0007162,GO:0008023,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009301,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010941,GO:0010942,GO:0015030,GO:0016070,GO:0016073,GO:0016604,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022407,GO:0022408,GO:0030155,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033081,GO:0033085,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0035327,GO:0035363,GO:0042221,GO:0042592,GO:0042795,GO:0042796,GO:0042981,GO:0043029,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044212,GO:0044213,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045580,GO:0045581,GO:0045595,GO:0045596,GO:0045619,GO:0045620,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045945,GO:0046483,GO:0046677,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048872,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050866,GO:0050868,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051241,GO:0051249,GO:0051250,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070228,GO:0070230,GO:0070232,GO:0070234,GO:0070243,GO:0070245,GO:0071025,GO:0071027,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0098781,GO:0140110,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902105,GO:1902106,GO:1902679,GO:1902680,GO:1903037,GO:1903038,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1903707,GO:1990837,GO:2000026,GO:2000106,GO:2000108,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.pre-mRNA cleavage required for polyadenylation
EggNOG OGsCOG5084@1,KOG1040@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930057.2968624-CDS-H-elongata_contig184736:68..2001622930057.2968624-CDS-H-elongata_contig184736:68..200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184736 69..200 -
1691679264.090374-CDS-H-elongata_contig184736:68..2001691679264.090374-CDS-H-elongata_contig184736:68..200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184736 69..200 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig184736.4979.1prot_H-elongata_contig184736.4979.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig184736 69..200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig184736.4979.1

>prot_H-elongata_contig184736.4979.1 ID=prot_H-elongata_contig184736.4979.1|Name=mRNA_H-elongata_contig184736.4979.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
IDVEGEKFRVLLGTNPGEVEEWRASRRKLWPTTANVARLGVPG*
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mRNA from alignment at H-elongata_contig184736:69..200-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig184736.4979.1 ID=mRNA_H-elongata_contig184736.4979.1|Name=mRNA_H-elongata_contig184736.4979.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig184736:69..200- (Himanthalia elongata Himel1 dioecious)
ATCGACGTGGAGGGCGAGAAGTTCCGCGTGCTGCTAGGAACCAACCCAGG
GGAGGTGGAGGAGTGGCGGGCGTCCCGAAGAAAGCTCTGGCCGACGACAG
CCAACGTTGCCAGGTTAGGAGTGCCAGGTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig184736:69..200-

>mRNA_H-elongata_contig184736.4979.1 ID=mRNA_H-elongata_contig184736.4979.1|Name=mRNA_H-elongata_contig184736.4979.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig184736:69..200- (Himanthalia elongata Himel1 dioecious)
ATCGACGTGGAGGGCGAGAAGTTCCGCGTGCTGCTAGGAACCAACCCAGG
GGAGGTGGAGGAGTGGCGGGCGTCCCGAAGAAAGCTCTGGCCGACGACAG
CCAACGTTGCCAGGTTAGGAGTGCCAGGTTAGATCGACGTGGAGGGCGAG
AAGTTCCGCGTGCTGCTAGGAACCAACCCAGGGGAGGTGGAGGAGTGGCG
GGCGTCCCGAAGAAAGCTCTGGCCGACGACAGCCAACGTTGCCAGGTTAG
GAGTGCCAGGTTAG
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