mRNA_H-elongata_contig184726.4978.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig184726.4978.1
Unique NamemRNA_H-elongata_contig184726.4978.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig184726.4978.1 vs. uniprot
Match: A0A6H5LB27_9PHAE (Diacylglycerol kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB27_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 3.540e-21
Identity = 44/56 (78.57%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:    1 IVQAVDAIAWKGERPPLAILPLGTGNDLARVLGWGSGYAGEGVEALLDTIESAQVS 168
            ++Q+VDAI+WK +RPPLAILPLGTGNDLARVLGWG GY GE VE LLDTIE+AQV+
Sbjct:  952 LLQSVDAISWKVKRPPLAILPLGTGNDLARVLGWGGGYTGEDVENLLDTIENAQVT 1007
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BLAST of mRNA_H-elongata_contig184726.4978.1 vs. uniprot
Match: D8LHV0_ECTSI (Diacylglycerol kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHV0_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 4.810e-21
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 IVQAVDAIAWKGERPPLAILPLGTGNDLARVLGWGSGYAGEGVEALLDTIESAQVS 168
            ++Q+VDAI WK +RPPLAILPLGTGNDLARVLGWG GY GE VE LLDTIE+AQV+
Sbjct:  214 LLQSVDAITWKVKRPPLAILPLGTGNDLARVLGWGGGYTGEDVENLLDTIENAQVT 269
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BLAST of mRNA_H-elongata_contig184726.4978.1 vs. uniprot
Match: A0A1I8FXV4_9PLAT (Diacylglycerol kinase n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8FXV4_9PLAT)

HSP 1 Score: 72.4 bits (176), Expect = 1.840e-13
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 IVQAVDAIAWKGERPPLAILPLGTGNDLARVLGWGSGYAGEGVEALLDTI 150
            +++A+D   W G+RPP+A+LPLGTGNDLAR LGWG GY GE +E +L  +
Sbjct:  387 LLEAMDTFDWPGDRPPVAVLPLGTGNDLARCLGWGGGYEGEPLEGILQRV 436
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BLAST of mRNA_H-elongata_contig184726.4978.1 vs. uniprot
Match: A0A267EGS9_9PLAT (Diacylglycerol kinase (Fragment) n=5 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267EGS9_9PLAT)

HSP 1 Score: 68.9 bits (167), Expect = 3.050e-12
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 IVQAVDAIAWKGERPPLAILPLGTGNDLARVLGWGSGYAGEGVEALLDTI 150
            +++A+D   W  +RPP+A+LPLGTGNDLAR LGWG GY GE +E +L  +
Sbjct:  360 LLEAMDTFDWPCDRPPVAVLPLGTGNDLARCLGWGGGYEGEPLEGILQRV 409
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BLAST of mRNA_H-elongata_contig184726.4978.1 vs. uniprot
Match: A0A1I8GT25_9PLAT (Diacylglycerol kinase n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8GT25_9PLAT)

HSP 1 Score: 68.9 bits (167), Expect = 3.080e-12
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 IVQAVDAIAWKGERPPLAILPLGTGNDLARVLGWGSGYAGEGVEALLDTI 150
            +++A+D   W  +RPP+A+LPLGTGNDLAR LGWG GY GE +E +L  +
Sbjct:   65 LLEAMDTFDWPCDRPPVAVLPLGTGNDLARCLGWGGGYEGEPLEGILQRV 114
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BLAST of mRNA_H-elongata_contig184726.4978.1 vs. uniprot
Match: A0A1I8GXP7_9PLAT (Diacylglycerol kinase n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8GXP7_9PLAT)

HSP 1 Score: 68.9 bits (167), Expect = 3.080e-12
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 IVQAVDAIAWKGERPPLAILPLGTGNDLARVLGWGSGYAGEGVEALLDTI 150
            +++A+D   W  +RPP+A+LPLGTGNDLAR LGWG GY GE +E +L  +
Sbjct:  338 LLEAMDTFDWPCDRPPVAVLPLGTGNDLARCLGWGGGYEGEPLEGILQRV 387
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BLAST of mRNA_H-elongata_contig184726.4978.1 vs. uniprot
Match: A0A836CH11_9STRA (Diacylglycerol kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH11_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 7.820e-12
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 IVQAVDAIAWKGERPPLAILPLGTGNDLARVLGWGSGYAG-EGVEALLDTI 150
            ++ A+DA+AW    PPLA+LP+GTGNDLAR LGWG GY G E +  LL+T+
Sbjct:  471 VLHAIDAVAWDRGPPPLAVLPMGTGNDLARTLGWGPGYDGTEDLNQLLETV 521
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BLAST of mRNA_H-elongata_contig184726.4978.1 vs. uniprot
Match: A0A2D4CGV6_PYTIN (Diacylglycerol kinase n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CGV6_PYTIN)

HSP 1 Score: 65.5 bits (158), Expect = 5.110e-11
Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 IVQAVDAIAWKGERPPLAILPLGTGNDLARVLGWGSGYAGEGVEALLDTIESAQVS 168
            ++ A+D +A    +PP+AILPLGTGNDLARVLGWGSGY+ + V  LL  +E+A VS
Sbjct:  895 VLGALDELAAP-RQPPIAILPLGTGNDLARVLGWGSGYSTKDVSDLLAEVEAAHVS 949
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BLAST of mRNA_H-elongata_contig184726.4978.1 vs. uniprot
Match: A0A183BW26_GLOPA (Diacylglycerol kinase n=1 Tax=Globodera pallida TaxID=36090 RepID=A0A183BW26_GLOPA)

HSP 1 Score: 65.1 bits (157), Expect = 6.940e-11
Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 IVQAVDAIAWKGERPPLAILPLGTGNDLARVLGWGSGYAGEGVEALLDTIE-SAQV 165
            +++++D IA+   RPP+A+LPLGTGNDLAR L WG GY  E ++ +L +IE S+QV
Sbjct:  508 VLESMDKIAYGDSRPPVAVLPLGTGNDLARCLKWGGGYENEPLQTILQSIERSSQV 563
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BLAST of mRNA_H-elongata_contig184726.4978.1 vs. uniprot
Match: A0A183CFM1_GLOPA (Diacylglycerol kinase n=2 Tax=Globodera pallida TaxID=36090 RepID=A0A183CFM1_GLOPA)

HSP 1 Score: 65.1 bits (157), Expect = 6.960e-11
Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 IVQAVDAIAWKGERPPLAILPLGTGNDLARVLGWGSGYAGEGVEALLDTIE-SAQV 165
            +++++D IA+   RPP+A+LPLGTGNDLAR L WG GY  E ++ +L +IE S+QV
Sbjct:  499 VLESMDKIAYGDSRPPVAVLPLGTGNDLARCLKWGGGYENEPLQTILQSIERSSQV 554
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184726.4978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LB27_9PHAE3.540e-2178.57Diacylglycerol kinase n=1 Tax=Ectocarpus sp. CCAP ... [more]
D8LHV0_ECTSI4.810e-2178.57Diacylglycerol kinase n=1 Tax=Ectocarpus siliculos... [more]
A0A1I8FXV4_9PLAT1.840e-1358.00Diacylglycerol kinase n=1 Tax=Macrostomum lignano ... [more]
A0A267EGS9_9PLAT3.050e-1256.00Diacylglycerol kinase (Fragment) n=5 Tax=Macrostom... [more]
A0A1I8GT25_9PLAT3.080e-1256.00Diacylglycerol kinase n=1 Tax=Macrostomum lignano ... [more]
A0A1I8GXP7_9PLAT3.080e-1256.00Diacylglycerol kinase n=1 Tax=Macrostomum lignano ... [more]
A0A836CH11_9STRA7.820e-1258.82Diacylglycerol kinase n=1 Tax=Tribonema minus TaxI... [more]
A0A2D4CGV6_PYTIN5.110e-1158.93Diacylglycerol kinase n=2 Tax=Pythium insidiosum T... [more]
A0A183BW26_GLOPA6.940e-1153.57Diacylglycerol kinase n=1 Tax=Globodera pallida Ta... [more]
A0A183CFM1_GLOPA6.960e-1153.57Diacylglycerol kinase n=2 Tax=Globodera pallida Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig184726contigH-elongata_contig184726:389..559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue6.5e-18
Seed eggNOG ortholog2880.D8LHV0
KEGG rclassRC00002,RC00017
KEGG koko:K00901
KEGG ReactionR02240
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04070,ko04072,ko05231,map00561,map00564,map01100,map01110,map04070,map04072,map05231
GOsGO:0003674,GO:0003824,GO:0004143,GO:0005488,GO:0005509,GO:0006793,GO:0006796,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0009266,GO:0009409,GO:0009611,GO:0009628,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0022622,GO:0032501,GO:0032502,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0048364,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050896,GO:0099402
EggNOG free text desc.protein kinase C-activating G-protein coupled receptor signaling pathway
EggNOG OGsKOG1169@1,KOG1169@2759
EC2.7.1.107
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930057.2450547-CDS-H-elongata_contig184726:388..5591622930057.2450547-CDS-H-elongata_contig184726:388..559Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184726 389..559 +
1691679264.0794542-CDS-H-elongata_contig184726:388..5591691679264.0794542-CDS-H-elongata_contig184726:388..559Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184726 389..559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig184726.4978.1prot_H-elongata_contig184726.4978.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig184726 389..559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig184726.4978.1

>prot_H-elongata_contig184726.4978.1 ID=prot_H-elongata_contig184726.4978.1|Name=mRNA_H-elongata_contig184726.4978.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
IVQAVDAIAWKGERPPLAILPLGTGNDLARVLGWGSGYAGEGVEALLDTI
ESAQVS*
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mRNA from alignment at H-elongata_contig184726:389..559+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig184726.4978.1 ID=mRNA_H-elongata_contig184726.4978.1|Name=mRNA_H-elongata_contig184726.4978.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig184726:389..559+ (Himanthalia elongata Himel1 dioecious)
ATAGTCCAGGCCGTGGACGCGATCGCTTGGAAAGGCGAACGACCGCCGTT
GGCGATTCTGCCGCTGGGCACGGGAAACGATCTTGCTCGGGTGCTTGGGT
GGGGAAGCGGTTACGCTGGGGAGGGTGTGGAAGCGCTGCTGGACACGATC
GAGAGCGCTCAGGTGAGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig184726:389..559+

>mRNA_H-elongata_contig184726.4978.1 ID=mRNA_H-elongata_contig184726.4978.1|Name=mRNA_H-elongata_contig184726.4978.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig184726:389..559+ (Himanthalia elongata Himel1 dioecious)
ATAGTCCAGGCCGTGGACGCGATCGCTTGGAAAGGCGAACGACCGCCGTT
GGCGATTCTGCCGCTGGGCACGGGAAACGATCTTGCTCGGGTGCTTGGGT
GGGGAAGCGGTTACGCTGGGGAGGGTGTGGAAGCGCTGCTGGACACGATC
GAGAGCGCTCAGGTGAGTTGAATAGTCCAGGCCGTGGACGCGATCGCTTG
GAAAGGCGAACGACCGCCGTTGGCGATTCTGCCGCTGGGCACGGGAAACG
ATCTTGCTCGGGTGCTTGGGTGGGGAAGCGGTTACGCTGGGGAGGGTGTG
GAAGCGCTGCTGGACACGATCGAGAGCGCTCAGGTGAGTTGA
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