mRNA_H-elongata_contig184411.4974.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig184411.4974.1
Unique NamemRNA_H-elongata_contig184411.4974.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig184411.4974.1 vs. uniprot
Match: D7FN93_ECTSI (Type-4 uracil-DNA glycosylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN93_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 9.500e-42
Identity = 74/114 (64.91%), Postives = 90/114 (78.95%), Query Frame = 1
Query:    1 QQEGGRIVVFRGNPAARIMMIGEAPGAEEDKLGKPFVGRSGQLLDKILLAAGLDPQRDVYSLMSQCSRVRWRSNIVRRRPANNRTPTSEELEFYLPMLLEEIRLVDPDIIVTLG 342
            +++GGR+VVFRG+P+A +M+IGEAPGAEED+LG PFVGRSGQLLD +L A G DP+R+VY            SNIVRRRP +NRTPT EE++FYLP LLEEI LVDP +IV LG
Sbjct:  155 EEDGGRVVVFRGDPSASLMLIGEAPGAEEDRLGVPFVGRSGQLLDDMLRAVGFDPEREVYV-----------SNIVRRRPIDNRTPTPEEMDFYLPFLLEEIGLVDPHVIVLLG 257          
BLAST of mRNA_H-elongata_contig184411.4974.1 vs. uniprot
Match: A0A835YMS9_9STRA (Type-4 uracil-DNA glycosylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMS9_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.650e-37
Identity = 69/111 (62.16%), Postives = 83/111 (74.77%), Query Frame = 1
Query:   10 GGRIVVFRGNPAARIMMIGEAPGAEEDKLGKPFVGRSGQLLDKILLAAGLDPQRDVYSLMSQCSRVRWRSNIVRRRPANNRTPTSEELEFYLPMLLEEIRLVDPDIIVTLG 342
            GGRIVV+RG+P A++M++GEAPGA ED+ GKPFVGRSGQLLD IL AAG DP+ D+Y            SNIVRRRP  NR PT+ E+ +Y P LLEEIRLV+P II+T G
Sbjct:   79 GGRIVVYRGDPQAKLMVVGEAPGAMEDETGKPFVGRSGQLLDAILKAAGFDPETDLYV-----------SNIVRRRPPENRDPTTAEIAYYRPWLLEEIRLVNPAIIITTG 178          
BLAST of mRNA_H-elongata_contig184411.4974.1 vs. uniprot
Match: A0A3M1EZS2_9CHLR (Type-4 uracil-DNA glycosylase n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1EZS2_9CHLR)

HSP 1 Score: 134 bits (337), Expect = 3.200e-37
Identity = 67/111 (60.36%), Postives = 80/111 (72.07%), Query Frame = 1
Query:   10 GGRIVVFRGNPAARIMMIGEAPGAEEDKLGKPFVGRSGQLLDKILLAAGLDPQRDVYSLMSQCSRVRWRSNIVRRRPANNRTPTSEELEFYLPMLLEEIRLVDPDIIVTLG 342
            GG +V++RGNPAA++M+IGE PGAEED+L KPFVGRSGQLLDKIL A   DP+ DVY            +N+V+RRP  NR PT EE+ FY P L EEIRLVDP II+  G
Sbjct:   49 GGNMVIYRGNPAAKLMVIGEGPGAEEDRLRKPFVGRSGQLLDKILRAVHFDPETDVYI-----------TNVVKRRPPENRDPTPEEINFYAPYLFEEIRLVDPKIIMLTG 148          
BLAST of mRNA_H-elongata_contig184411.4974.1 vs. uniprot
Match: A0A7C3BN30_9CHLR (Type-4 uracil-DNA glycosylase n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A7C3BN30_9CHLR)

HSP 1 Score: 129 bits (325), Expect = 1.200e-35
Identity = 64/114 (56.14%), Postives = 82/114 (71.93%), Query Frame = 1
Query:    1 QQEGGRIVVFRGNPAARIMMIGEAPGAEEDKLGKPFVGRSGQLLDKILLAAGLDPQRDVYSLMSQCSRVRWRSNIVRRRPANNRTPTSEELEFYLPMLLEEIRLVDPDIIVTLG 342
            +Q GG IV++RGNPAA++M+IGE PGA ED+L KPFVGRSG+LLD+IL A   +P++DVY            SN+VRRRP  NR P  +E+ FY P L EEIRL+DP II+ +G
Sbjct:   27 EQWGGNIVIYRGNPAAKLMIIGEGPGANEDRLRKPFVGRSGKLLDQILSAVNFNPEQDVYI-----------SNVVRRRPPKNRDPLPKEIAFYAPYLFEEIRLLDPKIILLIG 129          
BLAST of mRNA_H-elongata_contig184411.4974.1 vs. uniprot
Match: A0A7S2V4W6_9STRA (Type-4 uracil-DNA glycosylase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4W6_9STRA)

HSP 1 Score: 130 bits (326), Expect = 3.020e-35
Identity = 67/113 (59.29%), Postives = 81/113 (71.68%), Query Frame = 1
Query:   10 GGRIVVFRGNPAARIMMIGEAPGAEEDKLGKPFVGRSGQLLDKILLAAGLD--PQRDVYSLMSQCSRVRWRSNIVRRRPANNRTPTSEELEFYLPMLLEEIRLVDPDIIVTLG 342
            GG +VVFRGNP  R+M++GEAPG EEDK   PFVG++GQLL+K+L  AG D  PQ +VY            +N+V+RRP NNR PT EE+ FYLP+L EEIRLVDPDIIV  G
Sbjct:   79 GGSVVVFRGNPRGRVMVVGEAPGEEEDKQKLPFVGKAGQLLEKMLTEAGFDTGPQGEVYI-----------TNLVKRRPPNNRNPTPEEVSFYLPLLQEEIRLVDPDIIVCAG 180          
BLAST of mRNA_H-elongata_contig184411.4974.1 vs. uniprot
Match: A0A7S3A2Z9_9RHOD (Type-4 uracil-DNA glycosylase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A2Z9_9RHOD)

HSP 1 Score: 127 bits (318), Expect = 2.890e-34
Identity = 63/112 (56.25%), Postives = 81/112 (72.32%), Query Frame = 1
Query:    7 EGGRIVVFRGNPAARIMMIGEAPGAEEDKLGKPFVGRSGQLLDKILLAAGLDPQRDVYSLMSQCSRVRWRSNIVRRRPANNRTPTSEELEFYLPMLLEEIRLVDPDIIVTLG 342
            +GGRIV +RGNP A++M++GE PG +ED  GKPFVGRSG+LLDKIL +  LDP+ DVY            +N V+RRP +NR PT +E+E+YLP L EE+RLVDP +IV  G
Sbjct:   54 DGGRIVHYRGNPRAKLMVVGEGPGEQEDIEGKPFVGRSGKLLDKILRSVELDPEEDVYV-----------TNTVKRRPKDNRDPTRDEIEWYLPYLSEEVRLVDPHVIVCSG 154          
BLAST of mRNA_H-elongata_contig184411.4974.1 vs. uniprot
Match: A0A1W9W486_9CHLR (Type-4 uracil-DNA glycosylase n=1 Tax=Anaerolineaceae bacterium 4572_78 TaxID=1972460 RepID=A0A1W9W486_9CHLR)

HSP 1 Score: 124 bits (312), Expect = 1.340e-33
Identity = 63/114 (55.26%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    1 QQEGGRIVVFRGNPAARIMMIGEAPGAEEDKLGKPFVGRSGQLLDKILLAAGLDPQRDVYSLMSQCSRVRWRSNIVRRRPANNRTPTSEELEFYLPMLLEEIRLVDPDIIVTLG 342
            +  G  +V++RG P A +M+IGEAPGAEEDK+GKPFVGRSGQLLDKIL A   + + D+Y            +N ++RRP NNR P  EELE+Y P L EEIRLVDP II+  G
Sbjct:   31 ESTGSNMVIYRGYPKADLMIIGEAPGAEEDKIGKPFVGRSGQLLDKILQAVHFNIETDIYI-----------TNTLKRRPPNNRNPKQEELEYYFPFLAEEIRLVDPKIILLAG 133          
BLAST of mRNA_H-elongata_contig184411.4974.1 vs. uniprot
Match: A0A7C3CIK3_9CHLR (Type-4 uracil-DNA glycosylase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C3CIK3_9CHLR)

HSP 1 Score: 124 bits (312), Expect = 1.530e-33
Identity = 63/111 (56.76%), Postives = 78/111 (70.27%), Query Frame = 1
Query:   10 GGRIVVFRGNPAARIMMIGEAPGAEEDKLGKPFVGRSGQLLDKILLAAGLDPQRDVYSLMSQCSRVRWRSNIVRRRPANNRTPTSEELEFYLPMLLEEIRLVDPDIIVTLG 342
            G R+V++RGNP A ++++GE PGA ED+LGKP+VGRSGQLLDKIL AAG D Q  VY            +N V RRP +NR PT  EL+FYLP LLE IR+VDP +I+  G
Sbjct:   34 GNRMVIYRGNPQADLLIVGEGPGANEDRLGKPYVGRSGQLLDKILEAAGFDSQNGVYV-----------TNTVFRRPPDNRDPTQAELDFYLPYLLELIRIVDPKVILLTG 133          
BLAST of mRNA_H-elongata_contig184411.4974.1 vs. uniprot
Match: A0A7S2S1J0_9STRA (Type-4 uracil-DNA glycosylase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S1J0_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.760e-33
Identity = 61/114 (53.51%), Postives = 84/114 (73.68%), Query Frame = 1
Query:    1 QQEGGRIVVFRGNPAARIMMIGEAPGAEEDKLGKPFVGRSGQLLDKILLAAGLDPQRDVYSLMSQCSRVRWRSNIVRRRPANNRTPTSEELEFYLPMLLEEIRLVDPDIIVTLG 342
            ++ GGR+V +RGNP A+++++GEAPGA ED+LG P+VGR+G+LLD+IL AAG D + DVY            +N+V+RRP  NR PT+ EL +Y P+LLEE+RLVDP I+V  G
Sbjct:   44 EEFGGRVVHYRGNPGAKVVVVGEAPGATEDELGVPYVGRAGKLLDQILTAAGFDVEEDVYF-----------TNVVKRRPPENRDPTAAELRYYSPLLLEELRLVDPWIVVCTG 146          
BLAST of mRNA_H-elongata_contig184411.4974.1 vs. uniprot
Match: A0A3A0G0K9_9BACT (Type-4 uracil-DNA glycosylase (Fragment) n=1 Tax=bacterium TaxID=1869227 RepID=A0A3A0G0K9_9BACT)

HSP 1 Score: 118 bits (296), Expect = 3.360e-31
Identity = 64/108 (59.26%), Postives = 75/108 (69.44%), Query Frame = 1
Query:   19 IVVFRGNPAARIMMIGEAPGAEEDKLGKPFVGRSGQLLDKILLAAGLDPQRDVYSLMSQCSRVRWRSNIVRRRPANNRTPTSEELEFYLPMLLEEIRLVDPDIIVTLG 342
            +V+FRGNPAAR+M+IGEAPGAEED   KPFVG SGQLLD+IL +  LDP  DV             +N V RRP NNR PT EE+ +Y P LLE IRLVDP II+ +G
Sbjct:   56 VVIFRGNPAARLMLIGEAPGAEEDIQRKPFVGPSGQLLDQILRSVDLDPATDVIV-----------TNAVFRRPPNNRVPTPEEIAWYRPFLLEIIRLVDPAIILLVG 152          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184411.4974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN93_ECTSI9.500e-4264.91Type-4 uracil-DNA glycosylase n=1 Tax=Ectocarpus s... [more]
A0A835YMS9_9STRA2.650e-3762.16Type-4 uracil-DNA glycosylase n=1 Tax=Tribonema mi... [more]
A0A3M1EZS2_9CHLR3.200e-3760.36Type-4 uracil-DNA glycosylase n=1 Tax=Caldilineae ... [more]
A0A7C3BN30_9CHLR1.200e-3556.14Type-4 uracil-DNA glycosylase n=2 Tax=Chloroflexi ... [more]
A0A7S2V4W6_9STRA3.020e-3559.29Type-4 uracil-DNA glycosylase n=1 Tax=Fibrocapsa j... [more]
A0A7S3A2Z9_9RHOD2.890e-3456.25Type-4 uracil-DNA glycosylase n=1 Tax=Rhodosorus m... [more]
A0A1W9W486_9CHLR1.340e-3355.26Type-4 uracil-DNA glycosylase n=1 Tax=Anaerolineac... [more]
A0A7C3CIK3_9CHLR1.530e-3356.76Type-4 uracil-DNA glycosylase n=1 Tax=Anaerolineae... [more]
A0A7S2S1J0_9STRA1.760e-3353.51Type-4 uracil-DNA glycosylase n=1 Tax=Rhizochromul... [more]
A0A3A0G0K9_9BACT3.360e-3159.26Type-4 uracil-DNA glycosylase (Fragment) n=1 Tax=b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig184411contigH-elongata_contig184411:581..1071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.7
Seed ortholog evalue1.7e-33
Seed eggNOG ortholog2880.D7FN93
EggNOG free text desc.UreE urease accessory protein, C-terminal domain
EggNOG OGs2EIJQ@1,2SNYZ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUracil-DNA glycosylase-like
Ec32 orthologEc-15_003440.1
Exons2
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930057.0180871-CDS-H-elongata_contig184411:580..7421622930057.0180871-CDS-H-elongata_contig184411:580..742Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184411 581..742 -
1691679263.9816782-CDS-H-elongata_contig184411:580..7421691679263.9816782-CDS-H-elongata_contig184411:580..742Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184411 581..742 -
1622930057.0388846-CDS-H-elongata_contig184411:891..10711622930057.0388846-CDS-H-elongata_contig184411:891..1071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184411 892..1071 -
1691679263.9974885-CDS-H-elongata_contig184411:891..10711691679263.9974885-CDS-H-elongata_contig184411:891..1071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184411 892..1071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig184411.4974.1prot_H-elongata_contig184411.4974.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig184411 581..1071 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig184411.4974.1

>prot_H-elongata_contig184411.4974.1 ID=prot_H-elongata_contig184411.4974.1|Name=mRNA_H-elongata_contig184411.4974.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
QQEGGRIVVFRGNPAARIMMIGEAPGAEEDKLGKPFVGRSGQLLDKILLA
AGLDPQRDVYSLMSQCSRVRWRSNIVRRRPANNRTPTSEELEFYLPMLLE
EIRLVDPDIIVTLG
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mRNA from alignment at H-elongata_contig184411:581..1071-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig184411.4974.1 ID=mRNA_H-elongata_contig184411.4974.1|Name=mRNA_H-elongata_contig184411.4974.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=491bp|location=Sequence derived from alignment at H-elongata_contig184411:581..1071- (Himanthalia elongata Himel1 dioecious)
CAACAGGAGGGTGGGCGGATAGTCGTTTTCCGTGGCAACCCAGCAGCACG GATCATGATGATCGGGGAAGCACCAGGTGCTGAGGAAGACAAGCTAGGGA AACCATTCGTAGGACGGTCGGGCCAGCTGCTGGATAAAATATTACTGGCT GCCGGCTTGGATCCCCAGCGCGATGTGTATGTCAGGCAAGTAGGTTGATG GTGAACAATCAATGCGAATCAGGGGCAAATCTAGACTACTTAAATCTGGA ACCCTGCATGCATGATCGACGCTGTGAGTCAATGCTTTCTTAAACAAGAC AATCAACATAAGACGCAATAAGAGCGCAGAGCCTCATGAGTCAATGCTCC CGTGTTCGATGGCGCAGCAACATCGTACGGCGACGGCCGGCGAACAACCG TACGCCCACCTCCGAAGAGCTCGAGTTTTACCTGCCAATGCTACTGGAGG AAATCCGCCTGGTTGACCCCGATATAATCGTCACGCTCGGC
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Coding sequence (CDS) from alignment at H-elongata_contig184411:581..1071-

>mRNA_H-elongata_contig184411.4974.1 ID=mRNA_H-elongata_contig184411.4974.1|Name=mRNA_H-elongata_contig184411.4974.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig184411:581..1071- (Himanthalia elongata Himel1 dioecious)
CAACAGGAGGGTGGGCGGATAGTCGTTTTCCGTGGCAACCCAGCAGCACG
GATCATGATGATCGGGGAAGCACCAGGTGCTGAGGAAGACAAGCTAGGGA
AACCATTCGTAGGACGGTCGGGCCAGCTGCTGGATAAAATATTACTGGCT
GCCGGCTTGGATCCCCAGCGCGATGTGTATCAACAGGAGGGTGGGCGGAT
AGTCGTTTTCCGTGGCAACCCAGCAGCACGGATCATGATGATCGGGGAAG
CACCAGGTGCTGAGGAAGACAAGCTAGGGAAACCATTCGTAGGACGGTCG
GGCCAGCTGCTGGATAAAATATTACTGGCTGCCGGCTTGGATCCCCAGCG
CGATGTGTATAGCCTCATGAGTCAATGCTCCCGTGTTCGATGGCGCAGCA
ACATCGTACGGCGACGGCCGGCGAACAACCGTACGCCCACCTCCGAAGAG
CTCGAGTTTTACCTGCCAATGCTACTGGAGGAAATCCGCCTGGTTGACCC
CGATATAATCGTCACGCTCGGCAGCCTCATGAGTCAATGCTCCCGTGTTC
GATGGCGCAGCAACATCGTACGGCGACGGCCGGCGAACAACCGTACGCCC
ACCTCCGAAGAGCTCGAGTTTTACCTGCCAATGCTACTGGAGGAAATCCG
CCTGGTTGACCCCGATATAATCGTCACGCTCGGC
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