mRNA_H-elongata_contig18428.4968.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18428.4968.1
Unique NamemRNA_H-elongata_contig18428.4968.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig18428.4968.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 6.430e-30
Identity = 56/91 (61.54%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:    7 SNMMVELGFEKGFNSVPLYLDNTSTLHIAGNHTYSPRVKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLMNDF 279
            SNMM ELGF K F  +P+Y DNT+TLH  GN ++S R KHIALR+FF++ELV EG I+IHYV T+D LAD+GTKH  KHR   L+ L+N+F
Sbjct: 1574 SNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664
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BLAST of mRNA_H-elongata_contig18428.4968.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 8.410e-30
Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 1 
Query:    7 SNMMVELGFEKGFNSVPLYLDNTSTLHIAGNHTYSPRVKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLMNDF 279
            SNMM ELGF K F  +P+Y DNT+TLH  GN ++S R KHIALR+FF++ELV EG I+IHY  T+D LA +GTKH  KHR   L+  +N+F
Sbjct:  120 SNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHRFKHLMDRINNF 210
[Close]
BLAST of mRNA_H-elongata_contig18428.4968.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.080e-29
Identity = 55/91 (60.44%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:    7 SNMMVELGFEKGFNSVPLYLDNTSTLHIAGNHTYSPRVKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLMNDF 279
            SNMM ELGF K F  +P+Y DNT+TLH  GN ++S R KHIALR+FF++ELV EG I+IHY  T+D LAD+GTKH  KHR   L+ L+N+F
Sbjct:  345 SNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNF 435
[Close]
BLAST of mRNA_H-elongata_contig18428.4968.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.610e-29
Identity = 55/91 (60.44%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:    7 SNMMVELGFEKGFNSVPLYLDNTSTLHIAGNHTYSPRVKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLMNDF 279
            SNMM ELGF K F  +P+Y DNT+TLH  GN ++S R KHIALR+FF++ELV EG I+IHYV T+D LAD+GTKH   HR   L+ L+N+F
Sbjct:  905 SNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNF 995
[Close]
BLAST of mRNA_H-elongata_contig18428.4968.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 4.500e-28
Identity = 54/90 (60.00%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:    7 SNMMVELGFEKGFNSVPLYLDNTSTLHIAGNHTYSPRVKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLMND 276
            SNMM ELG  K F  +P+Y DNT+TLH  GN ++S R KHIALR+FF++ELV EG I+IHYV T+D LAD+GTKH  KHR   L+ L+N+
Sbjct:  566 SNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINN 655
[Close]
BLAST of mRNA_H-elongata_contig18428.4968.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 5.900e-27
Identity = 51/85 (60.00%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:    7 SNMMVELGFEKGFNSVPLYLDNTSTLHIAGNHTYSPRVKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALI 261
            +NMM ELGF   F S PLY+ NT+TLH+ GN T+S R KH+ALR+F+++E+V+EG I+IHY+ T+D LAD+GTKHL K RH  LI
Sbjct:  599 TNMMKELGFGSEFRSAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCLI 682
[Close]
BLAST of mRNA_H-elongata_contig18428.4968.1 vs. uniprot
Match: A0A6H5J9N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N2_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.140e-25
Identity = 50/93 (53.76%), Postives = 65/93 (69.89%), Query Frame = 1 
Query:    7 SNMMVELGFEKGFNSVPLYLDNTSTLHIAGNHTYSPRVKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLMNDFKA 285
            SN++ ELGF K F  VPLY DNT+TLH  GN ++S R KHIALR+FF+++LV EG I IH+V T    AD+GTKHL K R   L+ ++ +F  
Sbjct:  263 SNILTELGFGKEFAQVPLYCDNTATLHSLGNRSHSSRTKHIALRFFFIRDLVSEGKIFIHFVPTDSNPADIGTKHLNKDRFQHLLNMIKNFNV 355
[Close]
BLAST of mRNA_H-elongata_contig18428.4968.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.330e-25
Identity = 48/89 (53.93%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:    7 SNMMVELGFEKGFNSVPLYLDNTSTLHIAGNHTYSPRVKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLMN 273
            SN++ ELG  K F  VPLY DNT+TLH  GN ++S R KHIALR+F+++EL+ EG I+IHY+ T   +AD+GTKHL KHR   L+ +++
Sbjct: 1075 SNILTELGLGKEFAQVPLYCDNTATLHALGNRSFSSRTKHIALRFFYIRELISEGRISIHYIPTDSNIADIGTKHLNKHRLKHLLDIIS 1163
[Close]
BLAST of mRNA_H-elongata_contig18428.4968.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 3.380e-25
Identity = 51/94 (54.26%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:    7 SNMMVELGFEKGFNSVPLYLDNTSTLHIAGNHT-YSPRVKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLMNDFKA 285
            SN++ ELGF K F  VPLY DNT+TLH  GN + +S R KHIALR+F+++ELV EG I+IHY+ T    AD+GTKHL KHR   L+ +++ F  
Sbjct:  886 SNILTELGFGKEFAQVPLYCDNTATLHALGNRSSFSSRTKHIALRFFYIRELVSEGRISIHYIPTDSNPADIGTKHLNKHRLKHLLDIISSFNV 979
[Close]
BLAST of mRNA_H-elongata_contig18428.4968.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 3.380e-25
Identity = 51/93 (54.84%), Postives = 66/93 (70.97%), Query Frame = 1 
Query:    7 SNMMVELGFEKGFNSVPLYLDNTSTLHIAGNHTYSPRVKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLMNDFKA 285
            SNM+ ELGF K F  VPLY DNT+TLH  GN ++S R  HIALR+F+++ELV EG I+IHYV T   LAD+GTK+L KH    L+ +++ F  
Sbjct: 1103 SNMLTELGFGKEFAQVPLYCDNTATLHALGNRSFSSRENHIALRFFYIRELVLEGRISIHYVPTDSNLADIGTKYLNKHWLKHLLDIISSFNV 1195
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18428.4968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJH6_9PHAE6.430e-3061.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMK0_9PHAE8.410e-3058.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5U2_9PHAE1.080e-2960.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE1.610e-2960.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JME8_9PHAE4.500e-2860.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KBU1_9PHAE5.900e-2760.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J9N2_9PHAE1.140e-2553.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K129_9PHAE1.330e-2553.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC00_9PHAE3.380e-2554.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV6_9PHAE3.380e-2554.84Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18428contigH-elongata_contig18428:5049..5336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score72.0
Seed ortholog evalue1.6e-10
Seed eggNOG ortholog57918.XP_004310161.1
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs37SNQ@33090,3GHRQ@35493,4JTCD@91835,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size288
Cds size276
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930056.670541-CDS-H-elongata_contig18428:5048..53241622930056.670541-CDS-H-elongata_contig18428:5048..5324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18428 5049..5324 -
1691679263.8504632-CDS-H-elongata_contig18428:5048..53241691679263.8504632-CDS-H-elongata_contig18428:5048..5324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18428 5049..5324 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930056.686463-UTR-H-elongata_contig18428:5324..53361622930056.686463-UTR-H-elongata_contig18428:5324..5336Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18428 5325..5336 -
1691679263.8615596-UTR-H-elongata_contig18428:5324..53361691679263.8615596-UTR-H-elongata_contig18428:5324..5336Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18428 5325..5336 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18428.4968.1prot_H-elongata_contig18428.4968.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18428 5049..5324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18428.4968.1

>prot_H-elongata_contig18428.4968.1 ID=prot_H-elongata_contig18428.4968.1|Name=mRNA_H-elongata_contig18428.4968.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
MMVELGFEKGFNSVPLYLDNTSTLHIAGNHTYSPRVKHIALRYFFVQELV
EEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLMNDFKA*
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mRNA from alignment at H-elongata_contig18428:5049..5336-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18428.4968.1 ID=mRNA_H-elongata_contig18428.4968.1|Name=mRNA_H-elongata_contig18428.4968.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=288bp|location=Sequence derived from alignment at H-elongata_contig18428:5049..5336- (Himanthalia elongata Himel1 dioecious)
TGGACGTCCAACATGATGGTCGAGCTAGGATTCGAGAAAGGATTTAACAG
CGTCCCGTTGTACCTTGACAACACTTCAACATTGCACATCGCCGGAAATC
ATACGTACTCCCCTCGGGTGAAACATATTGCTCTGAGGTACTTCTTCGTT
CAAGAACTAGTGGAGGAGGGCATGATCACCATCCACTACGTGAACACCCA
AGATCAACTTGCAGACTTGGGCACAAAACATCTAGGCAAGCACCGTCACC
TCGCCCTCATCAAACTCATGAACGACTTTAAGGCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig18428:5049..5336-

>mRNA_H-elongata_contig18428.4968.1 ID=mRNA_H-elongata_contig18428.4968.1|Name=mRNA_H-elongata_contig18428.4968.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig18428:5049..5336- (Himanthalia elongata Himel1 dioecious)
ATGATGGTCGAGCTAGGATTCGAGAAAGGATTTAACAGCGTCCCGTTGTA
CCTTGACAACACTTCAACATTGCACATCGCCGGAAATCATACGTACTCCC
CTCGGGTGAAACATATTGCTCTGAGGTACTTCTTCGTTCAAGAACTAGTG
GAGGAGGGCATGATCACCATCCACTACGTGAACACCCAAGATCAACTTGC
AGACTTGGGCACAAAACATCTAGGCAAGCACCGTCACCTCGCCCTCATCA
AACTCATGAACGACTTTAAGGCCTGAATGATGGTCGAGCTAGGATTCGAG
AAAGGATTTAACAGCGTCCCGTTGTACCTTGACAACACTTCAACATTGCA
CATCGCCGGAAATCATACGTACTCCCCTCGGGTGAAACATATTGCTCTGA
GGTACTTCTTCGTTCAAGAACTAGTGGAGGAGGGCATGATCACCATCCAC
TACGTGAACACCCAAGATCAACTTGCAGACTTGGGCACAAAACATCTAGG
CAAGCACCGTCACCTCGCCCTCATCAAACTCATGAACGACTTTAAGGCCT
GA
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