mRNA_H-elongata_contig184261.4967.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig184261.4967.1
Unique NamemRNA_H-elongata_contig184261.4967.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig184261.4967.1 vs. uniprot
Match: A0A6H5KKL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL5_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.250e-19
Identity = 48/88 (54.55%), Postives = 62/88 (70.45%), Query Frame = 2 
Query:    5 KPTRDTVDSARWMTYDTANEFLARRRAARAPKRPSERTSPNGKMIQCVAGFRCFRSMKQAILEVTDALLEQDGTCQWERESSTDHMEV 268
            KP RD +DSARWM YD ANE+LA RR+ RAP+RP +  +P+GK++    GF+ FRSM  A+LEVT A+L QDG C   RE + D +E 
Sbjct: 2082 KPDRDALDSARWMAYDAANEYLAERRSKRAPRRPQDPPAPSGKLLHLFEGFQHFRSMDDAVLEVTSAVLGQDGACLPGREPNPDLIET 2169
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BLAST of mRNA_H-elongata_contig184261.4967.1 vs. uniprot
Match: D7FUD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD9_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.320e-19
Identity = 48/88 (54.55%), Postives = 62/88 (70.45%), Query Frame = 2 
Query:    5 KPTRDTVDSARWMTYDTANEFLARRRAARAPKRPSERTSPNGKMIQCVAGFRCFRSMKQAILEVTDALLEQDGTCQWERESSTDHMEV 268
            KP RD +DSARWM YD ANE+LA RR+ RAP+RP +  +P+GK++    GF+ FRSM  A+LEVT A+L QDG C   RE + D +E 
Sbjct: 4132 KPDRDALDSARWMAYDAANEYLAERRSKRAPRRPQDPPAPSGKLLHLFEGFQHFRSMDDAVLEVTSAVLGQDGACLPGREPNPDLIET 4219
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184261.4967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKL5_9PHAE1.250e-1954.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUD9_ECTSI1.320e-1954.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig184261contigH-elongata_contig184261:154..1124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size971
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig184261.4967.1prot_H-elongata_contig184261.4967.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig184261 194..523 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930056.593575-UTR-H-elongata_contig184261:153..1931622930056.593575-UTR-H-elongata_contig184261:153..193Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig184261 154..193 +
1691679263.8205-UTR-H-elongata_contig184261:153..1931691679263.8205-UTR-H-elongata_contig184261:153..193Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig184261 154..193 +
1622930056.6301947-UTR-H-elongata_contig184261:523..11241622930056.6301947-UTR-H-elongata_contig184261:523..1124Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig184261 524..1124 +
1691679263.8407178-UTR-H-elongata_contig184261:523..11241691679263.8407178-UTR-H-elongata_contig184261:523..1124Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig184261 524..1124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930056.6119552-CDS-H-elongata_contig184261:193..5231622930056.6119552-CDS-H-elongata_contig184261:193..523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184261 194..523 +
1691679263.8314948-CDS-H-elongata_contig184261:193..5231691679263.8314948-CDS-H-elongata_contig184261:193..523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184261 194..523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig184261.4967.1

>prot_H-elongata_contig184261.4967.1 ID=prot_H-elongata_contig184261.4967.1|Name=mRNA_H-elongata_contig184261.4967.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MTYDTANEFLARRRAARAPKRPSERTSPNGKMIQCVAGFRCFRSMKQAIL
EVTDALLEQDGTCQWERESSTDHMEVSRRLSGSRLGGLCMSGAHRMKRKL
PLLGSTQLV*
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mRNA from alignment at H-elongata_contig184261:154..1124+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig184261.4967.1 ID=mRNA_H-elongata_contig184261.4967.1|Name=mRNA_H-elongata_contig184261.4967.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=971bp|location=Sequence derived from alignment at H-elongata_contig184261:154..1124+ (Himanthalia elongata Himel1 dioecious)
TTCAAAGCCGACTCGTGACACCGTGGACTCTGCGCGGTGGATGACATACG
ATACAGCGAACGAATTCCTCGCTAGGCGGCGGGCGGCTAGGGCGCCGAAG
CGGCCGAGCGAGCGTACATCGCCAAACGGAAAGATGATACAGTGTGTAGC
GGGGTTCCGATGCTTCAGATCGATGAAGCAAGCGATATTGGAGGTGACTG
ACGCGTTGCTGGAGCAGGATGGCACATGTCAATGGGAAAGGGAGTCTAGC
ACAGACCATATGGAGGTAAGTCGAAGGCTGTCGGGTTCACGGTTGGGAGG
CTTGTGTATGAGCGGTGCCCATAGAATGAAGAGGAAACTGCCCTTACTGG
GTTCCACGCAGCTAGTGTAATACTAGTACTAGTGAGCGATCGCTCCCTGG
CATACGTTTCTTTATATATTTTTTCACAACAGTCGTCATAAATAACCTTG
CAGAGCTGAACCCGCGAACACGCCCCAGTCAATGCGCATCTTCGAGGGGA
GGGAATGGCGGCGTCACCGTCCGCTTTCGTTTTTCGTTTATGTCCAAACC
TTAGCTTTACTTTTTTTCTTCTAGTTTTTCTTCTCTTTTTGAAGATGTCG
CTTTTTCCGAGTATTATGTGTGTATGTTTTGTTATCCTATTTATTCTGGA
CATCATACTTGTGGATGCACCAGCCGAGGTCGGGTTCACACGTGATTTCT
CCACCTTCCTTCTGCGGTGCTTGCCTTAATTTTTTGTTATCGCGAGAAGG
ATTCAGCAGTCCCTCTCCCTCGTCGACCGTGAAGTCATTTTTTTGTGCTC
CCACGAAATAATCGTACTTTACTTGTTGAGCATAACGAAAAAAAAAATAC
CGGTTCGTGTGACGCACAGAGATTCGAACTCACGTCCCGACGTTACCATC
TGAGCCACCGAGGCGACTGGCCATGTATCATTGTTGTTTCCTTTTCTTAT
CTAGAGCTGCATTACAGTCCG
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Coding sequence (CDS) from alignment at H-elongata_contig184261:154..1124+

>mRNA_H-elongata_contig184261.4967.1 ID=mRNA_H-elongata_contig184261.4967.1|Name=mRNA_H-elongata_contig184261.4967.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig184261:154..1124+ (Himanthalia elongata Himel1 dioecious)
ATGACATACGATACAGCGAACGAATTCCTCGCTAGGCGGCGGGCGGCTAG
GGCGCCGAAGCGGCCGAGCGAGCGTACATCGCCAAACGGAAAGATGATAC
AGTGTGTAGCGGGGTTCCGATGCTTCAGATCGATGAAGCAAGCGATATTG
GAGGTGACTGACGCGTTGCTGGAGCAGGATGGCACATGTCAATGGGAAAG
GGAGTCTAGCACAGACCATATGGAGGTAAGTCGAAGGCTGTCGGGTTCAC
GGTTGGGAGGCTTGTGTATGAGCGGTGCCCATAGAATGAAGAGGAAACTG
CCCTTACTGGGTTCCACGCAGCTAGTGTAAATGACATACGATACAGCGAA
CGAATTCCTCGCTAGGCGGCGGGCGGCTAGGGCGCCGAAGCGGCCGAGCG
AGCGTACATCGCCAAACGGAAAGATGATACAGTGTGTAGCGGGGTTCCGA
TGCTTCAGATCGATGAAGCAAGCGATATTGGAGGTGACTGACGCGTTGCT
GGAGCAGGATGGCACATGTCAATGGGAAAGGGAGTCTAGCACAGACCATA
TGGAGGTAAGTCGAAGGCTGTCGGGTTCACGGTTGGGAGGCTTGTGTATG
AGCGGTGCCCATAGAATGAAGAGGAAACTGCCCTTACTGGGTTCCACGCA
GCTAGTGTAA
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