mRNA_H-elongata_contig18416.4966.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18416.4966.1
Unique NamemRNA_H-elongata_contig18416.4966.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18416.4966.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 1.120e-64
Identity = 134/196 (68.37%), Postives = 150/196 (76.53%), Query Frame = 1 
Query:    1 VLQDVRLLLLRLAHQESLSADCGGGAARSNIQLVPYQLQVAAHLAKANGSASNARQAQRLRTICRAFFDECRIAEEDVERGRNEPLVGVPAETATDSGDGSTAAGGVEAGAGAV-ESVRSRLHKCAGFVAVLTLLLQPLAEWERSKRFVLEQLIRNAGARKASGAEGXXXXXRGGRRRSRSFAAPGSPHHSAAGSA 585
            ++QDVRLLLLRLAHQESLSADCGGGAARSNIQL+PYQLQ AAHLAK  G++S ARQAQRLR+ICRAFFDECR+AE D ERG ++  V  PA  +T             A +  V E VRSRLH+C+GFVAVLTLLLQP+ EW R KRFVLEQLIR+AGARKA G  G     RGGRRRSRSFA P SP  SA+GSA
Sbjct: 8320 LIQDVRLLLLRLAHQESLSADCGGGAARSNIQLIPYQLQAAAHLAKITGTSSGARQAQRLRSICRAFFDECRLAEADAERG-HDGAVATPAAVSTAXXXXXXX---XXARSPVVPEGVRSRLHECSGFVAVLTLLLQPVEEWTRCKRFVLEQLIRHAGARKARGVAGSGVEGRGGRRRSRSFAGPSSPRVSASGSA 8511
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BLAST of mRNA_H-elongata_contig18416.4966.1 vs. uniprot
Match: D8LLX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX1_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 5.320e-12
Identity = 35/39 (89.74%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 VLQDVRLLLLRLAHQESLSADCGGGAARSNIQLVPYQLQ 117
            ++QDVRLLLLRLAHQESLSADCGGGAARSNIQ++PYQLQ
Sbjct:  545 LIQDVRLLLLRLAHQESLSADCGGGAARSNIQVIPYQLQ 583
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BLAST of mRNA_H-elongata_contig18416.4966.1 vs. uniprot
Match: A0A1E7F015_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F015_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.560e-5
Identity = 26/41 (63.41%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 VLQDVRLLLLRLAHQESLSADCGGGAARSNIQLVPYQLQVA 123
            VL DVRLL++R+A+ ESLSADCGGG+ RSN +L+ +QL +A
Sbjct: 1509 VLHDVRLLMIRMAYGESLSADCGGGSLRSNAELIFHQLSMA 1549
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BLAST of mRNA_H-elongata_contig18416.4966.1 vs. uniprot
Match: A0A7S0KAM1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KAM1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.020e-5
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:    1 VLQDVRLLLLRLAHQESLSADCGGGAARSNIQLVPYQLQVAAHLAK-ANGSASNARQAQRLRTICRAFF---DECRIAEEDVERGR 246
            +L D+R+LLLR+AH ESLS DCGGG+  SN  L+  QLQ+A    K A   A+++   + +R++  AF    + C    E+  R R
Sbjct: 1027 ILHDLRILLLRIAHGESLSVDCGGGSLSSNTVLIFQQLQMAEMCMKNAEAEANSSVIVEHVRSLGSAFVAGVEICNYVTEEQARAR 1112
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BLAST of mRNA_H-elongata_contig18416.4966.1 vs. uniprot
Match: A0A7S4NFE5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NFE5_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 9.030e-5
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    4 LQDVRLLLLRLAHQESLSADCGGGAARSNIQLVPYQLQVA 123
            + DVRLLLLR+AH ESL+ADCGGG+  SN QLV + L +A
Sbjct: 1062 MHDVRLLLLRIAHGESLNADCGGGSLTSNAQLVFHMLHLA 1101
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18416.4966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5J981_9PHAE1.120e-6468.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLX1_ECTSI5.320e-1289.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1E7F015_9STRA1.560e-563.41Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S0KAM1_9STRA2.020e-540.70Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A7S4NFE5_9STRA9.030e-565.00Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18416contigH-elongata_contig18416:6102..7254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue3.6e-11
Seed eggNOG ortholog2880.D8LLX1
KEGG koko:K10691
KEGG Pathwayko05165,ko05203,map05165,map05203
EggNOG free text desc.perineurial glial growth
EggNOG OGsKOG1776@1,KOG1776@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size686
Cds size684
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18416.4966.1prot_H-elongata_contig18416.4966.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18416 6102..7252 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930056.4174254-CDS-H-elongata_contig18416:6101..62181622930056.4174254-CDS-H-elongata_contig18416:6101..6218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18416 6102..6218 +
1691679263.7334392-CDS-H-elongata_contig18416:6101..62181691679263.7334392-CDS-H-elongata_contig18416:6101..6218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18416 6102..6218 +
1622930056.4294693-CDS-H-elongata_contig18416:6478..68081622930056.4294693-CDS-H-elongata_contig18416:6478..6808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18416 6479..6808 +
1691679263.7450435-CDS-H-elongata_contig18416:6478..68081691679263.7450435-CDS-H-elongata_contig18416:6478..6808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18416 6479..6808 +
1622930056.4397066-CDS-H-elongata_contig18416:7015..72521622930056.4397066-CDS-H-elongata_contig18416:7015..7252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18416 7016..7252 +
1691679263.7529075-CDS-H-elongata_contig18416:7015..72521691679263.7529075-CDS-H-elongata_contig18416:7015..7252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18416 7016..7252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18416.4966.1

>prot_H-elongata_contig18416.4966.1 ID=prot_H-elongata_contig18416.4966.1|Name=mRNA_H-elongata_contig18416.4966.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=228bp
VLQDVRLLLLRLAHQESLSADCGGGAARSNIQLVPYQLQVAAHLAKANGS
ASNARQAQRLRTICRAFFDECRIAEEDVERGRNEPLVGVPAETATDSGDG
STAAGGVEAGAGAVESVRSRLHKCAGFVAVLTLLLQPLAEWERSKRFVLE
QLIRNAGARKASGAEGSGVEGRGGRRRSRSFAAPGSPHHSAAGSAPQGGI
SVTGTGKRKRSSIHSPPAGGGGGDALDA
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mRNA from alignment at H-elongata_contig18416:6102..7254+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18416.4966.1 ID=mRNA_H-elongata_contig18416.4966.1|Name=mRNA_H-elongata_contig18416.4966.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1153bp|location=Sequence derived from alignment at H-elongata_contig18416:6102..7254+ (Himanthalia elongata Himel1 dioecious)
GTGCTGCAAGACGTTAGACTCCTTCTGCTGCGGCTCGCGCATCAGGAGAG
CTTGTCGGCTGACTGCGGGGGAGGCGCAGCTCGCAGCAACATCCAGCTCG
TTCCTTACCAGCTACAGGTCCTTTACGAGCCCATTCGTTTTCTCTCTCTC
TCTCTCGATCTTTTTTATCTTCATTTTTTTTTTTCCTGCTGGGATGAGTT
TTGCACATCAACCACGGCGAACACGCCTTGATGGTTTTTCTGGACCTACC
GTTGCCCCTATCGCTAGCTCCCCCCCACCCCTTCCACAATTCCATGAAAG
GCGGGTATTCCGATGTGTGAAGTGATTCCTTCCATCCCTTAGGTTTACTT
TCGCTCCTTTGCACGGTCCTCTCATAGGTGGCTGCTCACCTAGCAAAAGC
GAACGGCTCGGCGTCCAACGCGCGCCAAGCGCAACGCCTGCGTACCATCT
GCCGAGCGTTTTTCGACGAGTGTCGCATTGCCGAGGAGGATGTCGAGCGC
GGTCGCAACGAGCCCCTCGTAGGTGTCCCAGCGGAAACAGCCACTGATTC
CGGCGATGGTAGCACCGCCGCGGGTGGTGTCGAAGCTGGAGCCGGAGCCG
TGGAGAGCGTACGCTCTCGCCTGCACAAGTGTGCCGGCTTTGTGGCGGTT
CTTACGCTTCTACTACAGCCCTTGGCGGAGTGGGAGCGCAGCAAGCGTTT
CGTTCTGGTGAGTCGTAGTCGAGAAGTAAAGTGTAGGAGTGGAAGAGGGA
TTTGGGGGAGGCGTGTGGGATAACTGTCGATAATTGGTGGAGGGTGGTTA
CAGGGGAGGGGGGGTTATATCCGCACGTTTTGCGTTCCTCTGCGTGACTT
TTGCAACAAAGAATATGCTGTGCGTATGTCTCACGGGCGTTTGTGTGGAC
GCGGACTGTATCAGGAGCAACTAATCCGGAACGCTGGTGCAAGGAAAGCT
AGTGGCGCGGAGGGTTCTGGCGTGGAGGGTCGCGGGGGAAGGAGGCGTTC
GCGCTCTTTCGCGGCACCAGGAAGCCCTCACCATTCGGCGGCTGGTTCGG
CGCCGCAAGGTGGCATTTCCGTGACCGGCACGGGCAAGCGGAAGCGCTCG
TCGATCCATTCTCCCCCAGCCGGAGGAGGTGGTGGGGACGCCTTGGATGC
CGA
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Coding sequence (CDS) from alignment at H-elongata_contig18416:6102..7254+

>mRNA_H-elongata_contig18416.4966.1 ID=mRNA_H-elongata_contig18416.4966.1|Name=mRNA_H-elongata_contig18416.4966.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1368bp|location=Sequence derived from alignment at H-elongata_contig18416:6102..7254+ (Himanthalia elongata Himel1 dioecious)
GTGCTGCAAGACGTTAGACTCCTTCTGCTGCGGCTCGCGCATCAGGAGAG
CTTGTCGGCTGACTGCGGGGGAGGCGCAGCTCGCAGCAACATCCAGCTCG
TTCCTTACCAGCTACAGGTGCTGCAAGACGTTAGACTCCTTCTGCTGCGG
CTCGCGCATCAGGAGAGCTTGTCGGCTGACTGCGGGGGAGGCGCAGCTCG
CAGCAACATCCAGCTCGTTCCTTACCAGCTACAGGTGGCTGCTCACCTAG
CAAAAGCGAACGGCTCGGCGTCCAACGCGCGCCAAGCGCAACGCCTGCGT
ACCATCTGCCGAGCGTTTTTCGACGAGTGTCGCATTGCCGAGGAGGATGT
CGAGCGCGGTCGCAACGAGCCCCTCGTAGGTGTCCCAGCGGAAACAGCCA
CTGATTCCGGCGATGGTAGCACCGCCGCGGGTGGTGTCGAAGCTGGAGCC
GGAGCCGTGGAGAGCGTACGCTCTCGCCTGCACAAGTGTGCCGGCTTTGT
GGCGGTTCTTACGCTTCTACTACAGCCCTTGGCGGAGTGGGAGCGCAGCA
AGCGTTTCGTTCTGGTGGCTGCTCACCTAGCAAAAGCGAACGGCTCGGCG
TCCAACGCGCGCCAAGCGCAACGCCTGCGTACCATCTGCCGAGCGTTTTT
CGACGAGTGTCGCATTGCCGAGGAGGATGTCGAGCGCGGTCGCAACGAGC
CCCTCGTAGGTGTCCCAGCGGAAACAGCCACTGATTCCGGCGATGGTAGC
ACCGCCGCGGGTGGTGTCGAAGCTGGAGCCGGAGCCGTGGAGAGCGTACG
CTCTCGCCTGCACAAGTGTGCCGGCTTTGTGGCGGTTCTTACGCTTCTAC
TACAGCCCTTGGCGGAGTGGGAGCGCAGCAAGCGTTTCGTTCTGGAGCAA
CTAATCCGGAACGCTGGTGCAAGGAAAGCTAGTGGCGCGGAGGGTTCTGG
CGTGGAGGGTCGCGGGGGAAGGAGGCGTTCGCGCTCTTTCGCGGCACCAG
GAAGCCCTCACCATTCGGCGGCTGGTTCGGCGCCGCAAGGTGGCATTTCC
GTGACCGGCACGGGCAAGCGGAAGCGCTCGTCGATCCATTCTCCCCCAGC
CGGAGGAGGTGGTGGGGACGCCTTGGATGCCGAGCAACTAATCCGGAACG
CTGGTGCAAGGAAAGCTAGTGGCGCGGAGGGTTCTGGCGTGGAGGGTCGC
GGGGGAAGGAGGCGTTCGCGCTCTTTCGCGGCACCAGGAAGCCCTCACCA
TTCGGCGGCTGGTTCGGCGCCGCAAGGTGGCATTTCCGTGACCGGCACGG
GCAAGCGGAAGCGCTCGTCGATCCATTCTCCCCCAGCCGGAGGAGGTGGT
GGGGACGCCTTGGATGCC
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