mRNA_H-elongata_contig183922.4954.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig183922.4954.1
Unique NamemRNA_H-elongata_contig183922.4954.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig183922.4954.1 vs. uniprot
Match: A0A813EBF3_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EBF3_POLGL)

HSP 1 Score: 53.1 bits (126), Expect = 1.040e-5
Identity = 27/66 (40.91%), Postives = 35/66 (53.03%), Query Frame = 1 
Query:    4 WPQALMMFLDMRKAAEFHEGRGASVPRIPAP-----DATTYGTAITACSKGKQWRLALQLLDDMDR 186
            WP+AL M  D+        G GAS   +  P     D  ++G  + ACS+G +WR ALQLL DM R
Sbjct:  200 WPRALQMLQDLLPRPGPSSGAGASSASVDGPAKAMADEVSFGVVVKACSRGSEWRSALQLLRDMRR 265
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183922.4954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A813EBF3_POLGL1.040e-540.91Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183922contigH-elongata_contig183922:171..756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size339
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183922.4954.1prot_H-elongata_contig183922.4954.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig183922 171..738 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930055.6520224-CDS-H-elongata_contig183922:170..3341622930055.6520224-CDS-H-elongata_contig183922:170..334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183922 171..334 -
1691679263.3761687-CDS-H-elongata_contig183922:170..3341691679263.3761687-CDS-H-elongata_contig183922:170..334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183922 171..334 -
1622930055.6716187-CDS-H-elongata_contig183922:563..7381622930055.6716187-CDS-H-elongata_contig183922:563..738Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183922 564..738 -
1691679263.3860192-CDS-H-elongata_contig183922:563..7381691679263.3860192-CDS-H-elongata_contig183922:563..738Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183922 564..738 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930055.6867177-UTR-H-elongata_contig183922:738..7561622930055.6867177-UTR-H-elongata_contig183922:738..756Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig183922 739..756 -
1691679263.3978605-UTR-H-elongata_contig183922:738..7561691679263.3978605-UTR-H-elongata_contig183922:738..756Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig183922 739..756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig183922.4954.1

>prot_H-elongata_contig183922.4954.1 ID=prot_H-elongata_contig183922.4954.1|Name=mRNA_H-elongata_contig183922.4954.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MMFLDMRKAAEFHEGRGASVPRIPAPDATTYGTAITACSKGKQWRLALQL
LDDMDRKAKLFPVQGVFRTEAVFQATMAACAKVGRWRECIVTLQSMRASG
LQPQVQRMNHATT
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mRNA from alignment at H-elongata_contig183922:171..756-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig183922.4954.1 ID=mRNA_H-elongata_contig183922.4954.1|Name=mRNA_H-elongata_contig183922.4954.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=586bp|location=Sequence derived from alignment at H-elongata_contig183922:171..756- (Himanthalia elongata Himel1 dioecious)
AGGTGGCCCCAGGCCCTGATGATGTTCCTGGACATGCGAAAAGCCGCGGA
GTTCCACGAGGGAAGGGGAGCAAGCGTCCCCCGTATCCCCGCCCCGGATG
CAACGACCTACGGAACGGCCATCACGGCGTGCAGCAAGGGGAAGCAGTGG
AGGCTCGCGCTCCAGCTGCTGGACGACATGGATCGGAAGGCGAGTTTCTT
TATTTGTCATTAGATTGTATTAGTATAAGGATTAGTATAAGGATTAGTAT
AAGGATTAGTATAGGGATTAGTATAAGGATTAGTATAAGGATTAGTATAA
GGATTAGTATAAGGATTAGTATAAGGGTTAGTATAAGGATTAGTATAAGG
ATTAGTATAGTATTGTACAACTTCGATCAAATTTTGGGACAGACACACCG
ATAGACGCAAATAAACTGAAAGAGCTGTTTCCCGTACAGGGCGTTTTTCG
GACGGAGGCGGTGTTCCAGGCGACCATGGCGGCGTGTGCGAAGGTCGGTC
GCTGGCGGGAATGTATCGTGACCCTCCAGAGCATGCGCGCTAGCGGCCTG
CAGCCCCAGGTGCAACGGATGAACCACGCCACCACA
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Coding sequence (CDS) from alignment at H-elongata_contig183922:171..756-

>mRNA_H-elongata_contig183922.4954.1 ID=mRNA_H-elongata_contig183922.4954.1|Name=mRNA_H-elongata_contig183922.4954.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig183922:171..756- (Himanthalia elongata Himel1 dioecious)
ATGATGTTCCTGGACATGCGAAAAGCCGCGGAGTTCCACGAGGGAAGGGG
AGCAAGCGTCCCCCGTATCCCCGCCCCGGATGCAACGACCTACGGAACGG
CCATCACGGCGTGCAGCAAGGGGAAGCAGTGGAGGCTCGCGCTCCAGCTG
CTGGACGACATGGATCGGAAGGCGAATGATGTTCCTGGACATGCGAAAAG
CCGCGGAGTTCCACGAGGGAAGGGGAGCAAGCGTCCCCCGTATCCCCGCC
CCGGATGCAACGACCTACGGAACGGCCATCACGGCGTGCAGCAAGGGGAA
GCAGTGGAGGCTCGCGCTCCAGCTGCTGGACGACATGGATCGGAAGGCGA
AGCTGTTTCCCGTACAGGGCGTTTTTCGGACGGAGGCGGTGTTCCAGGCG
ACCATGGCGGCGTGTGCGAAGGTCGGTCGCTGGCGGGAATGTATCGTGAC
CCTCCAGAGCATGCGCGCTAGCGGCCTGCAGCCCCAGGTGCAACGGATGA
ACCACGCCACCACAAGCTGTTTCCCGTACAGGGCGTTTTTCGGACGGAGG
CGGTGTTCCAGGCGACCATGGCGGCGTGTGCGAAGGTCGGTCGCTGGCGG
GAATGTATCGTGACCCTCCAGAGCATGCGCGCTAGCGGCCTGCAGCCCCA
GGTGCAACGGATGAACCACGCCACCACA
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