mRNA_H-elongata_contig183746.4946.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig183746.4946.1
Unique NamemRNA_H-elongata_contig183746.4946.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig183746.4946.1 vs. uniprot
Match: A0A6A3NEQ7_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NEQ7_9STRA)

HSP 1 Score: 224 bits (570), Expect = 5.530e-64
Identity = 135/356 (37.92%), Postives = 190/356 (53.37%), Query Frame = 1
Query:    7 PTTLGEAQASSEWLQWKRAIAREMDGQIARGVWQVVERSKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVTQGFRQVKGIHYEESSSLTPAQASIRMVLSIIAALGWEAR*LDVDMTYLEAGVKEEIYVELPEAYRDSRKKVGVLKKAMYGLVHAGLLW*DQFGIELEAKGFQRSQAGPCVF-RRILHGIVVXXXXXXXDDLLVASATKRDEEQAVGDLCSCFLIKDLGEASYYLGCHITRDRNAGTLKFDQYQYIQTVAERFGVTKTSTI--PSAAGGKALSKSDSPQTDAEVEEMRQIPYRKIVGALMWVATMTRPDISFAAHQLAIFNDNPGPTHLRAAQKALQYLWHTRDLGI 1065
            PTT  +A AS +  QW+ A+  E+      G W +V R      +G R VF  K D+ GR+ +YK RLVT+GF+Q  GI + E+ S      SIR+VLS+ AA  +    LD D  +L +G+K+ +Y+E+P    ++R     L KA+YG   A   W           GF+      CV+ +R  +G +        DD+++A+ T  D  +    L + F +K+LG A + LG  I  D  AGT    Q +YI  V ERFG      +  P AAG K LSK+ SP TDAE   MR  PYR ++G L+++ T TRPDI+F   QL+ F +NPG  H  AA + L+YL   R LG+
Sbjct:  174 PTTHAQAMASGDAAQWRVAMDAELLSHERNGTWTLVPRGTANRTIGCRWVFAEKRDQYGRVVRYKARLVTKGFKQKYGIDFFETYSPVAYMNSIRVVLSVCAAYEYRMEQLDADTAFLNSGLKDRVYMEVPFGIENARDYQCQLNKAIYGSEQAASAWNKTIHRVCLGNGFKSCGVDQCVYVKRSKNGFIYVCLYD--DDMIIAAKTSEDIREVKDALKNAFKMKELGPAKFILGMEIDHDMTAGTHNIKQTRYIDDVVERFGQENAKPVDNPCAAGLK-LSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITTCTRPDIAFVVTQLSRFLENPGQQHWNAAVRVLRYLKSPRQLGM 526          
BLAST of mRNA_H-elongata_contig183746.4946.1 vs. uniprot
Match: A0A6A3LZL6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LZL6_9STRA)

HSP 1 Score: 218 bits (554), Expect = 9.040e-60
Identity = 133/357 (37.25%), Postives = 188/357 (52.66%), Query Frame = 1
Query:    4 EPTTLGEAQASSEWLQWKRAIAREMDGQIARGVWQVVERSKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVTQGFRQVKGIHYEESSSLTPAQASIRMVLSIIAALGWEAR*LDVDMTYLEAGVKEEIYVELPEAYRDSRKKVGVLKKAMYGLVHAGLLW*DQFGIELEAKGFQRSQAGPCVF-RRILHGIVVXXXXXXXDDLLVASATKRDEEQAVGDLCSCFLIKDLGEASYYLGCHITRDRNAGTLKFDQYQYIQTVAERFGVTKTSTI--PSAAGGKALSKSDSPQTDAEVEEMRQIPYRKIVGALMWVATMTRPDISFAAHQLAIFNDNPGPTHLRAAQKALQYLWHTRDLGI 1065
            E   L EA  + +  QW+ A+  E+      G W +V R      +G R VF  K D+ GR+ +YK RLVT+GF+Q  GI + E+ S      SIR+VLS+ AA  +    LD D  +L +G+K+ +Y+E+P    ++R     L KA+YG   A   W           GF+      CV+ +R  +G +        DD+++A+ T  D  +    L + F +K+LG A + LG  I  D  AGT    Q +YI  V ERFG      +  P AAG K LSK+ SP TDAE   MR  PYR ++G L+++ T TRPDI+F   QL+ F +NPG  H  AA + L+YL   R LG+
Sbjct:  630 EDGLLAEAVLAGDAAQWRVAMDAELLSHERNGTWTLVPRGTANRTIGCRWVFAEKRDQYGRVVRYKARLVTKGFKQKYGIDFFETYSPVAYMNSIRVVLSVCAAYEYRMEQLDADTAFLNSGLKDRVYMEVPFGIENARDYQCQLNKAIYGSEQAASAWNKTIHRVCLGNGFKSCGVDQCVYVKRSKNGFIYVCLYD--DDMIIAAKTSEDIREVKDALKNAFKMKELGPAKFILGMEIDHDMTAGTHNIKQTRYIDDVVERFGQENAKPVDNPCAAGLK-LSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITTCTRPDIAFVVTQLSRFLENPGQQHWNAAVRVLRYLKSPRQLGM 983          
BLAST of mRNA_H-elongata_contig183746.4946.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY)

HSP 1 Score: 210 bits (534), Expect = 6.950e-59
Identity = 124/355 (34.93%), Postives = 192/355 (54.08%), Query Frame = 1
Query:    4 EPTTLGEAQASSEWLQWKRAIAREMDGQIARGVWQVVERSKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVTQGFRQVKGIHYEESSSLTPAQASIRMVLSIIAALGWEAR*LDVDMTYLEAGVKEEIYVELPEAYRDSRKK--VGVLKKAMYGLVHAGLLW*DQFGIELEAKGFQRSQAGPCVF-RRILHGIVVXXXXXXXDDLLVASATKRDEEQAVGDLCSCFLIKDLGEASYYLGCHITRDRNAGTLKFDQYQYIQTVAERFGVTKTSTIPSAAG-GKALSKSDSPQTDAEVEEMRQIPYRKIVGALMWVATMTRPDISFAAHQLAIFNDNPGPTHLRAAQKALQYLWHTRD 1056
            +P +L EA  S+EW +WK AI +EM    + G + +VE  K   ++G++ VF+ K + +  IE YK RLV QGF QV GI + E+ +     ASI ++L++ A   WE   +DV   YL   ++EEIY++ P    +  K+  V  LK+ +YGL  +G  +  +   EL + G  RS+   CVF  R    +++       DD  +A  TK        ++ + F + DLGE  + LG  + RDR+  TL   Q+ YI  +  RF +    ++ +    G  LS    P T  + E+M+ IPYR+++G+LM+ A  TRPDI++A   L+ F  NPG  H  AA++  +YL  TR+
Sbjct:  111 DPASLNEAMQSTEWPKWKEAIVKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEREIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIHLILALAACYDWELHQMDVKGAYLNGDLEEEIYMQQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAG-TKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREVIGSLMYAALGTRPDIAYAITALSQFMQNPGQPHWEAAKRVFRYLAGTRE 464          
BLAST of mRNA_H-elongata_contig183746.4946.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM)

HSP 1 Score: 212 bits (539), Expect = 1.250e-57
Identity = 121/354 (34.18%), Postives = 190/354 (53.67%), Query Frame = 1
Query:    7 PTTLGEAQASSEWLQWKRAIAREMDGQIARGVWQVVERSKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVTQGFRQVKGIHYEESSSLTPAQASIRMVLSIIAALGWEAR*LDVDMTYLEAGVKEEIYVELPEAYRDSRKKVGVLKKAMYGLVHAGLLW*DQFGIELEAKGFQRSQAGPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVGDLCSCFLIKDLGEASYYLGCHITRDRNAGTLKFDQYQYIQTVAERFGVTKTSTIPSAA-GGKALSKSDSPQTDAEVEEMRQIPYRKIVGALMWVATMTRPDISFAAHQLAIFNDNPGPTHLRAAQKALQYLWHTRDLGI 1065
            PTT  +A  S+E  +W +A+  E+      G W +V R+     +G R VF +K ++ GR+ +YK RLV +GF+Q  G+ + E+ S      SIR+VLS++ A  +    LD D  +L + +KE++++E+P    ++   +  L KA+YGL  A   W           GF    A  CV+ +      V       DD+++A+ T ++ ++    L S F +K+LGE  + LG  I  DR A TL   Q +YI  V  RF       + +    G  L+K  SP T+AE E+MR  PYR ++G L+++ T TRPD+++   QL+ F +NPG  H +AA + L+YL  T++ GI
Sbjct:  837 PTTYQQAMKSNEASKWIKAMNSELKAHADNGSWTLVRRTSGARPIGCRWVFAKKRNEHGRVVRYKARLVAKGFKQKFGVDFFETYSPVANMNSIRVVLSVVVAKAYVTEQLDADTAFLNSDLKEQVFMEVPYGILNAEHMMCKLDKAIYGLKQAASAWHQTIHAVFMKIGFHSCGADQCVYVKGTKDNYVYVCLYV-DDMIIAAKTNKEIDEVKMALKSAFKMKELGEVKFILGMEIDHDRTASTLMIKQTRYIDDVTSRFNQQDAKAVVNPCESGMKLTKMQSPTTNAEREDMRNKPYRSLIGCLLYITTCTRPDVAYIVTQLSRFLENPGQQHWKAAIRVLRYLKTTKEFGI 1189          
BLAST of mRNA_H-elongata_contig183746.4946.1 vs. uniprot
Match: E2LZP6_MONPE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LZP6_MONPE)

HSP 1 Score: 205 bits (522), Expect = 2.460e-57
Identity = 129/357 (36.13%), Postives = 193/357 (54.06%), Query Frame = 1
Query:    4 EPTTLGEAQASSEWLQWKRAIAREMDGQIARGVWQVVERSKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVTQGFRQVKGIHYEESSSLTPAQASIRMVLSIIAALGWEAR*LDVDMTYLEAGVKEEIYVELPEAYRDSRKKVGV-LKKAMYGLVHAGLLW*DQFGIELEAKGFQRSQAGPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVGDLCSCFLIKDLGEASYYLGCHITRDRNAGTLKFDQYQYIQTVAERFGVT--KTSTIPSAAGGKALSKSDSPQTDAEVEEMRQIPYRKIVGALMWVATMTRPDISFAAHQLAIFNDNPGPTHLRAAQKALQYLWHTRDLGI 1065
            EP T  +A  S    QW+ A+  EM   ++ G W +VE    +  +G++ V++ K   DG IE++K RLV +GF Q  G  Y E+ + T  Q ++R VL++ A      R +D+   ++ + +  EIY+  PE +R    ++   L K++YGL  A  LW ++ GI +    +Q          +++  + V       DD+ +AS ++   ++ V  L   F ++DLG  SY LG  ITR+R    L   Q QYI    E FG+T  K +T P       LSKS SPQT  EVEEM +IPY   VG+L+++ATMTRPDI++ A  LA FN NPG  H +A +  L+YL  T D+ +
Sbjct:  103 EPVTYRQAITSPNAEQWQEAMIEEMTAHLSNGTWNLVELPPGQKAIGSKWVYRIKHKADGSIERFKARLVAKGFSQRLGFDYSETFASTMRQNTLRTVLALAAVEDLHLRSIDISHAFINSDIDTEIYMTQPEGFRQGGPRIVCRLDKSLYGLKQAPRLWDEKLGIYI----YQNDNV------KVIVPVFV-------DDITLASKSEDMLDEFVAKLSKHFKLRDLGATSYLLGVEITRNRPERKLYLSQRQYIINKLEEFGMTDCKPATTPMTPN-LILSKSQSPQTPDEVEEMSEIPYISAVGSLLYLATMTRPDIAYTASVLARFNSNPGMDHWKAVKHVLRYLKGTMDIKL 441          
BLAST of mRNA_H-elongata_contig183746.4946.1 vs. uniprot
Match: A0A2R6PCF8_9APHY (Uncharacterized protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6PCF8_9APHY)

HSP 1 Score: 211 bits (536), Expect = 3.230e-57
Identity = 132/357 (36.97%), Postives = 198/357 (55.46%), Query Frame = 1
Query:   13 TLGEAQASSEWLQWKRAIAREMDGQIARGVWQVVERSKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVTQGFRQVKGIHYEESSSLTPAQASIRMVLSIIAALGWEAR*LDVDMTYLEAGVKEE--IYVELPE--AYRDSRKKVGVLKKAMYGLVHAGLLW*DQFGIELEAKGFQRSQAGPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEE--QAVGDLCSCFLIKDLGEASYYLGCHITRDRNAGTLKFDQYQYIQTVAERFGVT--KTSTIPSAAGGKALSKSDSPQTDAEVEEMRQIPYRKIVGALMWVATMTRPDISFAAHQLAIFNDNPGPTHLRAAQKALQYLWHTRDL 1059
            TL EA+   +W +W  AI  E++     G W++V+R     V+G++ V + K D  G I+KYK RLV QGF Q+ GI Y E+ +     +SIR++L+I A  GW+ +  D +  YL + + ++  IY+E P   A +D +  V  L+KA+YGL   G  W +   I L   GF R+++   VF  I    +        D  +  S+T    E  + +G+    + + DLGE S+ LG  + RDR A TL   Q+ YI ++  RF  T  K S+IP     + L+KS  P + A++  MR+IPYR+ +G+LM+ A  TRPDISFA   LA F+ NPG TH  A ++  +YL  T++L
Sbjct:  965 TLEEARKRPDWPKWLAAIRAELESLKLNGTWELVDRPSAVNVVGSKWVLRIKKDASGAIDKYKARLVAQGFTQIHGIDYFETFAPVAKLSSIRLILAIAARNGWDIQSFDFNSAYLNSTLDDDEVIYLEQPPDFAEKDPKNYVLRLRKALYGLKQGGRKWYEHLCIALADLGFNRAESDYGVFFAIDANNITVLAIHVDDCAITGSSTPLISEYKRRIGEK---YPLTDLGEVSWLLGIKVARDREARTLSLSQHAYIDSILARFNFTDLKPSSIPMDPNLQ-LTKSQCPTSLADIARMRKIPYREAIGSLMYAAVGTRPDISFAISTLAQFSQNPGWTHWEAVKRVFRYLLGTKNL 1317          
BLAST of mRNA_H-elongata_contig183746.4946.1 vs. uniprot
Match: A0A060SPD4_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SPD4_PYCCI)

HSP 1 Score: 209 bits (532), Expect = 1.060e-56
Identity = 127/357 (35.57%), Postives = 193/357 (54.06%), Query Frame = 1
Query:    4 EPTTLGEAQASSEWLQWKRAIAREMDGQIARGVWQVVERSKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVTQGFRQVKGIHYEESSSLTPAQASIRMVLSIIAALGWEAR*LDVDMTYLEAGVKEEIYVELP--EAYRDSRKKVGVLKKAMYGLVHAGLLW*DQFGIELEAKGFQRSQAGPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVGDLCSCFLIKDLGEASYYLGCHITRDRNAGTLKFDQYQYIQTVAERFGVTKTSTIPSAAGG-KALSKSDSPQTDAEVEEMRQIPYRKIVGALMWVATMTRPDISFAAHQLAIFNDNPGPTHLRAAQKALQYLWHTRDLGI 1065
            EP+   EA+   +W +W+ AI  E+D  +A G W++V R     V+ ++ V + K +  G I+KYK RLV +GF QV G+ Y ++ +     +SIR++L+I A  GW A   D +  YL + + E++Y+E P   A+ D +  V  L+KA+YGL   G  W +     L   GF R +A   VF +   G  +       DD L+  +++R  +     + + + I DLG  S+ LG  I+ D  AGTL   Q+ YI+ +  RF  T    +       + LSK+  P++ AEV  MR++PYR+ +GALM+ A  TRPDI+FA   LA F  NPG  H  A ++  +YL  TR L +
Sbjct:  798 EPS-YAEAKKRPDWPKWQEAIKAELDSLVANGTWRIVPRPSSGNVVDSKWVLRVKKNAAGEIDKYKARLVARGFTQVYGVDYYDTFAPVAKLSSIRLLLAIAARNGWAADSFDFNSAYLNSKLDEDVYLEQPPDHAFADRKAFVLKLEKALYGLKQGGRKWYETLCAALGRLGFTRVEADWGVFYKH-EGEHLIVLAVHVDDCLLTGSSRRLLDDTKSKIGTVYKITDLGPVSWLLGIKISCDLEAGTLSLSQHAYIEALLARFNFTDLKPVSMPMDPHQLLSKTQCPESPAEVARMRRVPYREAIGALMYAALGTRPDIAFAVSTLAQFAQNPGQPHWDAVKRIFRYLLGTRTLSL 1152          
BLAST of mRNA_H-elongata_contig183746.4946.1 vs. uniprot
Match: Q572I3_PHYIN (Putative polyprotein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=Q572I3_PHYIN)

HSP 1 Score: 209 bits (531), Expect = 1.460e-56
Identity = 130/355 (36.62%), Postives = 186/355 (52.39%), Query Frame = 1
Query:    7 PTTLGEAQASSEWLQWKRAIAREMDGQIARGVWQVVERSKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVTQGFRQVKGIHYEESSSLTPAQASIRMVLSIIAALGWEAR*LDVDMTYLEAGVKEEIYVELPEAYRDSRKKVGVLKKAMYGLVHAGLLW*DQFGIELEAKGFQRSQAGPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVGDLCSCFLIKDLGEASYYLGCHITRDRNAGTLKFDQYQYIQTVAERFGVTKTSTI--PSAAGGKALSKSDSPQTDAEVEEMRQIPYRKIVGALMWVATMTRPDISFAAHQLAIFNDNPGPTHLRAAQKALQYLWHTRDLGI 1065
            P T  EA AS+E  +W+RA+  E++     G W +V R      +G R VF +K D++GR+ +YK RLV QGF+Q  GI + E+ S      SIR VL++    G+    LD D  +L + +   +Y+++P    ++      L KA+YGL  A   W           GF+   A  CV+ +      V       DD+++A+ T+ +  +    L S F +K+LGEA + LG  I  DR  GTL   Q +YI  + ERF       +  P AA  K LSK  SP T+ E  EM   PYR ++G LM++ T TRPDI++   QLA F ++PG  H +AA + LQYL  TR  GI
Sbjct:  827 PNTYAEAIASNEAGEWRRAMQSELNSHSRNGTWTLVPRGTTTRSIGCRWVFTKKRDENGRVIRYKARLVAQGFKQKFGIDFFETYSPVANMNSIRAVLAVCVTCGYIMEQLDADTAFLNSCLVNLVYMDVPLGLENAEGMKCNLLKAIYGLKQAASAWNKTIHRVFLQNGFKCCGADQCVYVKRSKNAFVYVCLYV-DDMIIAAKTRDEIREVKNALKSAFKMKELGEAKFILGMEIDHDRECGTLMIKQTRYIDDIVERFNQRNAKMVEYPCAANLK-LSKMMSPTTEKERAEMWSRPYRSLIGCLMYITTCTRPDIAYVVTQLARFLEDPGTQHWKAAIRVLQYLKSTRHHGI 1179          
BLAST of mRNA_H-elongata_contig183746.4946.1 vs. uniprot
Match: A0A4S4K4Q2_9APHY (Uncharacterized protein n=2 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K4Q2_9APHY)

HSP 1 Score: 208 bits (530), Expect = 2.030e-56
Identity = 136/355 (38.31%), Postives = 191/355 (53.80%), Query Frame = 1
Query:   13 TLGEAQASSEWLQWKRAIAREMDGQIARGVWQVVERSKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVTQGFRQVKGIHYEESSSLTPAQASIRMVLSIIAALGWEAR*LDVDMTYLEAGVK--EEIYVELPEAY--RDSRKKVGVLKKAMYGLVHAGLLW*DQFGIELEAKGFQRSQAGPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVGDLCSCFLIKDLGEASYYLGCHITRDRNAGTLKFDQYQYIQTVAERFGVT--KTSTIPSAAGGKALSKSDSPQTDAEVEEMRQIPYRKIVGALMWVATMTRPDISFAAHQLAIFNDNPGPTHLRAAQKALQYLWHTRDL 1059
            TL EA+   +W +W  AI  E++  I    W VVER     V+G++ V + K D  G I+KYK RLV QGF QV G+ Y E+ +     ASIR+VL+I A  GWE +  D +  YL + +   EEIY+E P  +  +D +  V  LKKA+YGL   G  W +   I L   GF+R++A   VF   + G  +       DD ++   +     Q    L   + + DLG  S+ LG  +TRD  A TL   Q+ YI ++  RF  T  K S+IP     + L KS  P +  ++  MR+IPYR+ +G+LM+ A  TRPDISFA   LA F+ NPG  H  A ++  +YL  T+ L
Sbjct:  965 TLEEARKRPDWAKWLAAIKAELESLIRNDTWTVVERPLGVNVVGSKWVLRIKKDATGAIDKYKARLVAQGFTQVYGVDYFETFAPVAKIASIRLVLAIAARNGWEVQSFDFNSAYLNSVLDDDEEIYLEQPPQFSLKDPKLHVLRLKKALYGLKQGGRKWYEHLCIALADLGFKRAEADYGVFYAKV-GESLVLLAIHVDDCIITGNSSTLISQYKRQLGDKYSLTDLGPVSWLLGIKVTRDLEARTLSLSQHAYIDSILARFNFTDLKPSSIPMDPNIQFL-KSQCPTSLIDIARMRKIPYREAIGSLMYAAVGTRPDISFAVSTLAQFSHNPGWIHWEAVKRVFRYLLGTKML 1317          
BLAST of mRNA_H-elongata_contig183746.4946.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU)

HSP 1 Score: 207 bits (526), Expect = 2.260e-56
Identity = 135/362 (37.29%), Postives = 192/362 (53.04%), Query Frame = 1
Query:    4 EPTTLGEAQASSEWLQWKRAIAREMDGQIAR----GVWQVVERSKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVTQGFRQVKGIHYEESSSLTPAQASIRMVLSIIAALGWEAR*LDVDMTYLEAGVKEEIYVELPEAYRDSRKKVGVLKKAMYGLVHAGLLW*DQFGIELEAK-GFQRSQAGPCVF-RRILHGIVVXXXXXXXDDLLVASATKRDEEQAVGDLCSCFLIKDLGEASYYLGCHITRDRNAGTLKFDQYQYIQTVAERFGVTKTS--TIPSAAGGKALSKSDSPQTDAEVEEMRQIPYRKIVGALMWVATMTRPDISFAAHQLAIFNDNPGPTHLRAAQKALQYLWHTRDLGI 1065
            EP TL EAQA+ EW +WKRA    MD +IA+    G +   +    +  +G R V++ K D DGRI +YK RLV QGF Q  G+ Y E+ +      S+R++L+I A    E    DV   YL A + EEIY+  P  Y +    +  L+KA+YGL  AG  W       L A  GFQR  + PCV+ ++   G+ +       DD+   + T    +     L   + I DLG     LG  I+RDR   TL   Q QYIQTV +RF +   +  T P     K   + +    DA++ EM+ +PY+ ++G+LM+ A  TRPDIS+A   L+ ++  PG TH  AA++ L+YL  T+D GI
Sbjct:   14 EPRTLSEAQAAPEWPEWKRA----MDDEIAQLRKLGTYAPADLPAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSSPIVRLRKALYGLKQAGXQWNHHINKVLTADLGFQRLNSDPCVYLKKSPKGLTIVGMHV--DDMAALADTPDLMDTLRSGLARHYKITDLGTPRLLLGFEISRDRKKRTLSIKQSQYIQTVLDRFKMADCNPVTTPLDPNVKLCKEPE----DADLSEMKGVPYQALIGSLMYAALGTRPDISYAVQALSQYSARPGITHWTAAKRVLRYLKGTQDFGI 365          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183746.4946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3NEQ7_9STRA5.530e-6437.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3LZL6_9STRA9.040e-6037.25Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A401GP19_9APHY6.950e-5934.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H572_PHYRM1.250e-5734.18Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
E2LZP6_MONPE2.460e-5736.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2R6PCF8_9APHY3.230e-5736.97Uncharacterized protein n=1 Tax=Hermanssonia centr... [more]
A0A060SPD4_PYCCI1.060e-5635.57Integrase catalytic domain-containing protein n=1 ... [more]
Q572I3_PHYIN1.460e-5636.62Putative polyprotein n=1 Tax=Phytophthora infestan... [more]
A0A4S4K4Q2_9APHY2.030e-5638.31Uncharacterized protein n=2 Tax=Hermanssonia centr... [more]
A0A1M2V3W8_TRAPU2.260e-5637.29Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183746contigH-elongata_contig183746:182..1246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score73.9
Seed ortholog evalue4e-11
Seed eggNOG ortholog126957.SMAR004826-PA
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1065
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183746.4946.1prot_H-elongata_contig183746.4946.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig183746 257..517 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930054.2162552-UTR-H-elongata_contig183746:181..2561622930054.2162552-UTR-H-elongata_contig183746:181..256Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig183746 182..256 +
1691679262.903775-UTR-H-elongata_contig183746:181..2561691679262.903775-UTR-H-elongata_contig183746:181..256Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig183746 182..256 +
1622930054.2462835-UTR-H-elongata_contig183746:517..12461622930054.2462835-UTR-H-elongata_contig183746:517..1246Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig183746 518..1246 +
1691679262.9272363-UTR-H-elongata_contig183746:517..12461691679262.9272363-UTR-H-elongata_contig183746:517..1246Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig183746 518..1246 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930054.2299125-CDS-H-elongata_contig183746:256..5171622930054.2299125-CDS-H-elongata_contig183746:256..517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183746 257..517 +
1691679262.9169486-CDS-H-elongata_contig183746:256..5171691679262.9169486-CDS-H-elongata_contig183746:256..517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183746 257..517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig183746.4946.1

>prot_H-elongata_contig183746.4946.1 ID=prot_H-elongata_contig183746.4946.1|Name=mRNA_H-elongata_contig183746.4946.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MDGQIARGVWQVVERSKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVTQGF
RQVKGIHYEESSSLTPAQASIRMVLSIIAALGWEAR*
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mRNA from alignment at H-elongata_contig183746:182..1246+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig183746.4946.1 ID=mRNA_H-elongata_contig183746.4946.1|Name=mRNA_H-elongata_contig183746.4946.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1065bp|location=Sequence derived from alignment at H-elongata_contig183746:182..1246+ (Himanthalia elongata Himel1 dioecious)
CCAGAGCCGACAACCTTGGGCGAGGCGCAAGCGTCGTCGGAGTGGCTGCA ATGGAAAAGGGCGATCGCGCGCGAGATGGATGGGCAAATTGCTCGAGGCG TGTGGCAGGTGGTGGAGCGCTCAAAAAGGAAGACGGTGTTGGGCACGAGA GTAGTTTTCAAGCGAAAAATCGACAAGGATGGAAGGATCGAGAAGTATAA ATGTCGTCTCGTGACGCAAGGGTTCAGGCAGGTCAAAGGTATACACTACG AGGAATCCTCCTCTCTGACTCCTGCGCAGGCCAGCATTAGGATGGTACTC AGCATAATCGCGGCTCTCGGCTGGGAGGCGCGGTAGCTGGACGTCGACAT GACCTACCTGGAGGCCGGTGTGAAGGAGGAGATCTACGTTGAGCTCCCGG AGGCATACCGTGACTCCAGGAAGAAAGTCGGCGTACTAAAGAAGGCAATG TACGGACTCGTCCACGCCGGGCTGCTGTGGTAAGACCAGTTCGGGATCGA GCTCGAGGCGAAGGGTTTTCAGAGATCTCAAGCCGGCCCATGCGTGTTCC GGCGGATTCTCCACGGGATAGTGGTAGTCGTCATCGTGGTCTACGTCGAC GACCTGTTGGTTGCTAGTGCGACGAAACGTGACGAGGAGCAAGCGGTGGG GGACCTGTGCTCCTGTTTCCTCATCAAGGATCTAGGGGAGGCTTCATATT ACCTGGGATGCCACATCACGCGGGACCGAAACGCCGGGACACTGAAGTTC GACCAGTATCAGTACATACAGACTGTGGCGGAACGTTTTGGCGTGACGAA GACCAGCACCATCCCGTCTGCGGCAGGAGGAAAAGCCCTTTCGAAATCAG ACAGCCCGCAAACGGACGCAGAGGTTGAAGAAATGCGCCAGATTCCCTAC CGAAAAATCGTTGGGGCCCTAATGTGGGTAGCGACGATGACCAGGCCCGA CATTTCATTCGCTGCGCACCAACTGGCGATATTCAACGACAACCCGGGAC CGACACACTTGAGGGCAGCCCAGAAAGCGCTGCAATATTTATGGCACACT CGGGACCTCGGGATC
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Coding sequence (CDS) from alignment at H-elongata_contig183746:182..1246+

>mRNA_H-elongata_contig183746.4946.1 ID=mRNA_H-elongata_contig183746.4946.1|Name=mRNA_H-elongata_contig183746.4946.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig183746:182..1246+ (Himanthalia elongata Himel1 dioecious)
ATGGATGGGCAAATTGCTCGAGGCGTGTGGCAGGTGGTGGAGCGCTCAAA
AAGGAAGACGGTGTTGGGCACGAGAGTAGTTTTCAAGCGAAAAATCGACA
AGGATGGAAGGATCGAGAAGTATAAATGTCGTCTCGTGACGCAAGGGTTC
AGGCAGGTCAAAGGTATACACTACGAGGAATCCTCCTCTCTGACTCCTGC
GCAGGCCAGCATTAGGATGGTACTCAGCATAATCGCGGCTCTCGGCTGGG
AGGCGCGGTAGATGGATGGGCAAATTGCTCGAGGCGTGTGGCAGGTGGTG
GAGCGCTCAAAAAGGAAGACGGTGTTGGGCACGAGAGTAGTTTTCAAGCG
AAAAATCGACAAGGATGGAAGGATCGAGAAGTATAAATGTCGTCTCGTGA
CGCAAGGGTTCAGGCAGGTCAAAGGTATACACTACGAGGAATCCTCCTCT
CTGACTCCTGCGCAGGCCAGCATTAGGATGGTACTCAGCATAATCGCGGC
TCTCGGCTGGGAGGCGCGGTAG
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