mRNA_H-elongata_contig183744.4945.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig183744.4945.1 vs. uniprot
Match: A0A6H5LE92_9PHAE (Glyco_trans_2-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LE92_9PHAE) HSP 1 Score: 200 bits (509), Expect = 3.550e-58 Identity = 93/105 (88.57%), Postives = 97/105 (92.38%), Query Frame = 3
Query: 3 HSYIGRYATYTGAGFQEGVSLTCADEVIRLRKYAYGACEMLLNKFKHWPCRGPITNLFWSYLFARCIPWPSKLQMVGYLGTYLAMAYSVVGICVYVTLRMFYGVL 317
+ +IGRYATYTG GFQEGVSLTC DEVIRLRKYAYGACEMLLNKFKHWPCRGPIT+LFWSYL AR IPWPSKLQM GYLGTYLAMAYSVVGIC Y+ LRMFYGVL
Sbjct: 545 NGFIGRYATYTGPGFQEGVSLTCVDEVIRLRKYAYGACEMLLNKFKHWPCRGPITSLFWSYLGARGIPWPSKLQMAGYLGTYLAMAYSVVGICSYIVLRMFYGVL 649
BLAST of mRNA_H-elongata_contig183744.4945.1 vs. uniprot
Match: D7G567_ECTSI (Glyco_trans_2-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G567_ECTSI) HSP 1 Score: 142 bits (357), Expect = 4.500e-37 Identity = 62/93 (66.67%), Postives = 77/93 (82.80%), Query Frame = 3
Query: 9 YIGRYATYTGAGFQEGVSLTCADEVIRLRKYAYGACEMLLNKFKHWPCRGPITNLFWSYLFARCIPWPSKLQMVGYLGTYLAMAYSVVGICVY 287
YIGRY TYTG GFQEGVSLT ADEVIRLRKYAYG+CE++LNKF WPC GPIT++FW YL A +P+P+K++M+ YL TY++MA++ GI Y
Sbjct: 580 YIGRYCTYTGEGFQEGVSLTAADEVIRLRKYAYGSCEIMLNKFTKWPCSGPITSMFWRYLLAGGVPFPAKIRMIAYLCTYISMAFAFYGIVGY 672
BLAST of mRNA_H-elongata_contig183744.4945.1 vs. uniprot
Match: A0A8J9SNR8_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SNR8_9CHLO) HSP 1 Score: 105 bits (263), Expect = 2.260e-24 Identity = 47/87 (54.02%), Postives = 62/87 (71.26%), Query Frame = 3
Query: 6 SYIGRYATYTGAGFQEGVSLTCADEVIRLRKYAYGACEMLLNKFKHWPCRGPITNLFWSYLFARCIPWPSKLQMVGYLGTYLAMAYS 266
+YIGRY +YTGAGFQEG+SLT DE+ R KYAYG EML N + WP +G ++LF +Y+ R IPW +K+ + Y+GTY A+A S
Sbjct: 642 NYIGRYISYTGAGFQEGLSLTIHDEITRYCKYAYGCSEMLFNPVRQWPQKGVFSSLFLTYICLRTIPWYTKVSTMAYVGTYYALAMS 728
BLAST of mRNA_H-elongata_contig183744.4945.1 vs. uniprot
Match: A0A420YPE3_9PEZI (Glyco_trans_2-like domain-containing protein n=1 Tax=Coniochaeta pulveracea TaxID=177199 RepID=A0A420YPE3_9PEZI) HSP 1 Score: 101 bits (252), Expect = 6.920e-23 Identity = 48/84 (57.14%), Postives = 61/84 (72.62%), Query Frame = 3
Query: 9 YIGRYATYTGAGFQEGVSLTCADEVIRLRKYAYGACEMLLNKFKHWPCRGPITNLFWSYLFARCIPWPSKLQMVGYLGTYLAMA 260
Y RYA+YTG+GF+EGVSLT DE+ R KYA+G E+L + K WP RGP+T LF +LF+ CIP P KL +V Y+GTY A+A
Sbjct: 687 YSLRYASYTGSGFKEGVSLTVYDELARWEKYAFGCNELLFHPLKSWPTRGPLTPLFRQFLFS-CIPLPKKLTIVAYIGTYYAIA 769
BLAST of mRNA_H-elongata_contig183744.4945.1 vs. uniprot
Match: A0A7S0PX07_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PX07_9STRA) HSP 1 Score: 101 bits (251), Expect = 9.390e-23 Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = 3
Query: 9 YIGRYATYTGAGFQEGVSLTCADEVIRLRKYAYGACEMLLNKFKHWPCRGPITNLFWSYLFARCIPWPSKLQMVGYLGTYLAMAYSV 269
YIGRYA Y G GFQEGVSLT DE+I+L+K+AYGA EM+ NKF++W +GP L YL + IP +++ MV Y T+ AMA+ V
Sbjct: 301 YIGRYAMYCGMGFQEGVSLTVFDEIIKLKKFAYGAGEMMFNKFRYWCWKGPFAPLIIDYLRTKEIPLAARVNMVAYFFTFFAMAWGV 387
BLAST of mRNA_H-elongata_contig183744.4945.1 vs. uniprot
Match: I0Z2J3_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z2J3_COCSC) HSP 1 Score: 100 bits (250), Expect = 1.320e-22 Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = 3
Query: 9 YIGRYATYTGAGFQEGVSLTCADEVIRLRKYAYGACEMLLNKFKHWPCRGPITNLFWSYLFARCIPWPSKLQMVGYLGTYLAMAYS 266
YIGRY +YTGAGFQEG+SLT DE+ R KYAYG EML N + W +G + LF SY+ R IPW +K+ + Y+GTY A+A S
Sbjct: 1696 YIGRYISYTGAGFQEGLSLTIHDEITRYCKYAYGCSEMLFNPVRQWLRQGIFSRLFISYITLRNIPWYTKVSTMAYVGTYFALAMS 1781
BLAST of mRNA_H-elongata_contig183744.4945.1 vs. uniprot
Match: A0A383VVQ8_TETOB (Glyco_trans_2-like domain-containing protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VVQ8_TETOB) HSP 1 Score: 99.8 bits (247), Expect = 3.240e-22 Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 3
Query: 12 IGRYATYTGAGFQEGVSLTCADEVIRLRKYAYGACEMLLNKFKHWPCRGPITNLFWSYLFARCIPWPSKLQMVGYLGTYLAMA 260
+GRY YTG FQEGVSLT DEVI+ +K+AYGACE+L N K WP +GP + F +Y+ + I W K ++ YL +YLAMA
Sbjct: 463 LGRYVMYTGDEFQEGVSLTYMDEVIKFKKFAYGACELLFNPIKQWPTKGPFNSKFLAYMRNKNIRWYQKTSLLAYLSSYLAMA 545
BLAST of mRNA_H-elongata_contig183744.4945.1 vs. uniprot
Match: A0A383WNV9_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WNV9_TETOB) HSP 1 Score: 96.3 bits (238), Expect = 3.640e-22 Identity = 43/83 (51.81%), Postives = 55/83 (66.27%), Query Frame = 3
Query: 12 IGRYATYTGAGFQEGVSLTCADEVIRLRKYAYGACEMLLNKFKHWPCRGPITNLFWSYLFARCIPWPSKLQMVGYLGTYLAMA 260
GRY YTG FQEG+SLT DEV++ +K+AYGACE+L N F+ W +GPI F Y+ + I W K M+ YL +YLAMA
Sbjct: 11 FGRYVMYTGDEFQEGISLTYMDEVVKFKKFAYGACELLFNPFREWISKGPINKKFRLYMANKNIRWYQKSSMLAYLSSYLAMA 93
BLAST of mRNA_H-elongata_contig183744.4945.1 vs. uniprot
Match: A0A7J7Q341_9CHLO (Glycosyl transferase family group 2-domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q341_9CHLO) HSP 1 Score: 97.8 bits (242), Expect = 1.520e-21 Identity = 45/83 (54.22%), Postives = 53/83 (63.86%), Query Frame = 3
Query: 12 IGRYATYTGAGFQEGVSLTCADEVIRLRKYAYGACEMLLNKFKHWPCRGPITNLFWSYLFARCIPWPSKLQMVGYLGTYLAMA 260
GRY YTGA FQEGVSLT DEV++ +K+AYGACE+L N K WP +GP F YL I W K+ M YL +Y AMA
Sbjct: 459 FGRYVMYTGAEFQEGVSLTYMDEVVKFKKFAYGACELLFNPLKQWPTKGPFNKKFVLYLKNPNIKWYQKISMCAYLSSYQAMA 541
BLAST of mRNA_H-elongata_contig183744.4945.1 vs. uniprot
Match: A0A383VWK9_TETOB (Glyco_trans_2-like domain-containing protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VWK9_TETOB) HSP 1 Score: 96.3 bits (238), Expect = 5.290e-21 Identity = 43/83 (51.81%), Postives = 55/83 (66.27%), Query Frame = 3
Query: 12 IGRYATYTGAGFQEGVSLTCADEVIRLRKYAYGACEMLLNKFKHWPCRGPITNLFWSYLFARCIPWPSKLQMVGYLGTYLAMA 260
GRY YTG FQEG+SLT DEV++ +K+AYGACE+L N F+ W +GPI F Y+ + I W K M+ YL +YLAMA
Sbjct: 470 FGRYVMYTGDEFQEGISLTYMDEVVKFKKFAYGACELLFNPFREWISKGPINKKFRLYMANKNIRWYQKSSMLAYLSSYLAMA 552 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183744.4945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig183744.4945.1 >prot_H-elongata_contig183744.4945.1 ID=prot_H-elongata_contig183744.4945.1|Name=mRNA_H-elongata_contig183744.4945.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp HTVTSGATPRTRGPASKKGLASLAPTRSSASGSTPTARARCSSTSLSTGLback to top mRNA from alignment at H-elongata_contig183744:57..1014- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig183744.4945.1 ID=mRNA_H-elongata_contig183744.4945.1|Name=mRNA_H-elongata_contig183744.4945.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=958bp|location=Sequence derived from alignment at H-elongata_contig183744:57..1014- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig183744:57..1014- >mRNA_H-elongata_contig183744.4945.1 ID=mRNA_H-elongata_contig183744.4945.1|Name=mRNA_H-elongata_contig183744.4945.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig183744:57..1014- (Himanthalia elongata Himel1 dioecious)back to top |