mRNA_H-elongata_contig183744.4945.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig183744.4945.1
Unique NamemRNA_H-elongata_contig183744.4945.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig183744.4945.1 vs. uniprot
Match: A0A6H5LE92_9PHAE (Glyco_trans_2-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LE92_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 3.550e-58
Identity = 93/105 (88.57%), Postives = 97/105 (92.38%), Query Frame = 3
Query:    3 HSYIGRYATYTGAGFQEGVSLTCADEVIRLRKYAYGACEMLLNKFKHWPCRGPITNLFWSYLFARCIPWPSKLQMVGYLGTYLAMAYSVVGICVYVTLRMFYGVL 317
            + +IGRYATYTG GFQEGVSLTC DEVIRLRKYAYGACEMLLNKFKHWPCRGPIT+LFWSYL AR IPWPSKLQM GYLGTYLAMAYSVVGIC Y+ LRMFYGVL
Sbjct:  545 NGFIGRYATYTGPGFQEGVSLTCVDEVIRLRKYAYGACEMLLNKFKHWPCRGPITSLFWSYLGARGIPWPSKLQMAGYLGTYLAMAYSVVGICSYIVLRMFYGVL 649          
BLAST of mRNA_H-elongata_contig183744.4945.1 vs. uniprot
Match: D7G567_ECTSI (Glyco_trans_2-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G567_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 4.500e-37
Identity = 62/93 (66.67%), Postives = 77/93 (82.80%), Query Frame = 3
Query:    9 YIGRYATYTGAGFQEGVSLTCADEVIRLRKYAYGACEMLLNKFKHWPCRGPITNLFWSYLFARCIPWPSKLQMVGYLGTYLAMAYSVVGICVY 287
            YIGRY TYTG GFQEGVSLT ADEVIRLRKYAYG+CE++LNKF  WPC GPIT++FW YL A  +P+P+K++M+ YL TY++MA++  GI  Y
Sbjct:  580 YIGRYCTYTGEGFQEGVSLTAADEVIRLRKYAYGSCEIMLNKFTKWPCSGPITSMFWRYLLAGGVPFPAKIRMIAYLCTYISMAFAFYGIVGY 672          
BLAST of mRNA_H-elongata_contig183744.4945.1 vs. uniprot
Match: A0A8J9SNR8_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SNR8_9CHLO)

HSP 1 Score: 105 bits (263), Expect = 2.260e-24
Identity = 47/87 (54.02%), Postives = 62/87 (71.26%), Query Frame = 3
Query:    6 SYIGRYATYTGAGFQEGVSLTCADEVIRLRKYAYGACEMLLNKFKHWPCRGPITNLFWSYLFARCIPWPSKLQMVGYLGTYLAMAYS 266
            +YIGRY +YTGAGFQEG+SLT  DE+ R  KYAYG  EML N  + WP +G  ++LF +Y+  R IPW +K+  + Y+GTY A+A S
Sbjct:  642 NYIGRYISYTGAGFQEGLSLTIHDEITRYCKYAYGCSEMLFNPVRQWPQKGVFSSLFLTYICLRTIPWYTKVSTMAYVGTYYALAMS 728          
BLAST of mRNA_H-elongata_contig183744.4945.1 vs. uniprot
Match: A0A420YPE3_9PEZI (Glyco_trans_2-like domain-containing protein n=1 Tax=Coniochaeta pulveracea TaxID=177199 RepID=A0A420YPE3_9PEZI)

HSP 1 Score: 101 bits (252), Expect = 6.920e-23
Identity = 48/84 (57.14%), Postives = 61/84 (72.62%), Query Frame = 3
Query:    9 YIGRYATYTGAGFQEGVSLTCADEVIRLRKYAYGACEMLLNKFKHWPCRGPITNLFWSYLFARCIPWPSKLQMVGYLGTYLAMA 260
            Y  RYA+YTG+GF+EGVSLT  DE+ R  KYA+G  E+L +  K WP RGP+T LF  +LF+ CIP P KL +V Y+GTY A+A
Sbjct:  687 YSLRYASYTGSGFKEGVSLTVYDELARWEKYAFGCNELLFHPLKSWPTRGPLTPLFRQFLFS-CIPLPKKLTIVAYIGTYYAIA 769          
BLAST of mRNA_H-elongata_contig183744.4945.1 vs. uniprot
Match: A0A7S0PX07_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PX07_9STRA)

HSP 1 Score: 101 bits (251), Expect = 9.390e-23
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = 3
Query:    9 YIGRYATYTGAGFQEGVSLTCADEVIRLRKYAYGACEMLLNKFKHWPCRGPITNLFWSYLFARCIPWPSKLQMVGYLGTYLAMAYSV 269
            YIGRYA Y G GFQEGVSLT  DE+I+L+K+AYGA EM+ NKF++W  +GP   L   YL  + IP  +++ MV Y  T+ AMA+ V
Sbjct:  301 YIGRYAMYCGMGFQEGVSLTVFDEIIKLKKFAYGAGEMMFNKFRYWCWKGPFAPLIIDYLRTKEIPLAARVNMVAYFFTFFAMAWGV 387          
BLAST of mRNA_H-elongata_contig183744.4945.1 vs. uniprot
Match: I0Z2J3_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z2J3_COCSC)

HSP 1 Score: 100 bits (250), Expect = 1.320e-22
Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = 3
Query:    9 YIGRYATYTGAGFQEGVSLTCADEVIRLRKYAYGACEMLLNKFKHWPCRGPITNLFWSYLFARCIPWPSKLQMVGYLGTYLAMAYS 266
            YIGRY +YTGAGFQEG+SLT  DE+ R  KYAYG  EML N  + W  +G  + LF SY+  R IPW +K+  + Y+GTY A+A S
Sbjct: 1696 YIGRYISYTGAGFQEGLSLTIHDEITRYCKYAYGCSEMLFNPVRQWLRQGIFSRLFISYITLRNIPWYTKVSTMAYVGTYFALAMS 1781          
BLAST of mRNA_H-elongata_contig183744.4945.1 vs. uniprot
Match: A0A383VVQ8_TETOB (Glyco_trans_2-like domain-containing protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VVQ8_TETOB)

HSP 1 Score: 99.8 bits (247), Expect = 3.240e-22
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 3
Query:   12 IGRYATYTGAGFQEGVSLTCADEVIRLRKYAYGACEMLLNKFKHWPCRGPITNLFWSYLFARCIPWPSKLQMVGYLGTYLAMA 260
            +GRY  YTG  FQEGVSLT  DEVI+ +K+AYGACE+L N  K WP +GP  + F +Y+  + I W  K  ++ YL +YLAMA
Sbjct:  463 LGRYVMYTGDEFQEGVSLTYMDEVIKFKKFAYGACELLFNPIKQWPTKGPFNSKFLAYMRNKNIRWYQKTSLLAYLSSYLAMA 545          
BLAST of mRNA_H-elongata_contig183744.4945.1 vs. uniprot
Match: A0A383WNV9_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WNV9_TETOB)

HSP 1 Score: 96.3 bits (238), Expect = 3.640e-22
Identity = 43/83 (51.81%), Postives = 55/83 (66.27%), Query Frame = 3
Query:   12 IGRYATYTGAGFQEGVSLTCADEVIRLRKYAYGACEMLLNKFKHWPCRGPITNLFWSYLFARCIPWPSKLQMVGYLGTYLAMA 260
             GRY  YTG  FQEG+SLT  DEV++ +K+AYGACE+L N F+ W  +GPI   F  Y+  + I W  K  M+ YL +YLAMA
Sbjct:   11 FGRYVMYTGDEFQEGISLTYMDEVVKFKKFAYGACELLFNPFREWISKGPINKKFRLYMANKNIRWYQKSSMLAYLSSYLAMA 93          
BLAST of mRNA_H-elongata_contig183744.4945.1 vs. uniprot
Match: A0A7J7Q341_9CHLO (Glycosyl transferase family group 2-domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q341_9CHLO)

HSP 1 Score: 97.8 bits (242), Expect = 1.520e-21
Identity = 45/83 (54.22%), Postives = 53/83 (63.86%), Query Frame = 3
Query:   12 IGRYATYTGAGFQEGVSLTCADEVIRLRKYAYGACEMLLNKFKHWPCRGPITNLFWSYLFARCIPWPSKLQMVGYLGTYLAMA 260
             GRY  YTGA FQEGVSLT  DEV++ +K+AYGACE+L N  K WP +GP    F  YL    I W  K+ M  YL +Y AMA
Sbjct:  459 FGRYVMYTGAEFQEGVSLTYMDEVVKFKKFAYGACELLFNPLKQWPTKGPFNKKFVLYLKNPNIKWYQKISMCAYLSSYQAMA 541          
BLAST of mRNA_H-elongata_contig183744.4945.1 vs. uniprot
Match: A0A383VWK9_TETOB (Glyco_trans_2-like domain-containing protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VWK9_TETOB)

HSP 1 Score: 96.3 bits (238), Expect = 5.290e-21
Identity = 43/83 (51.81%), Postives = 55/83 (66.27%), Query Frame = 3
Query:   12 IGRYATYTGAGFQEGVSLTCADEVIRLRKYAYGACEMLLNKFKHWPCRGPITNLFWSYLFARCIPWPSKLQMVGYLGTYLAMA 260
             GRY  YTG  FQEG+SLT  DEV++ +K+AYGACE+L N F+ W  +GPI   F  Y+  + I W  K  M+ YL +YLAMA
Sbjct:  470 FGRYVMYTGDEFQEGISLTYMDEVVKFKKFAYGACELLFNPFREWISKGPINKKFRLYMANKNIRWYQKSSMLAYLSSYLAMA 552          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183744.4945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LE92_9PHAE3.550e-5888.57Glyco_trans_2-like domain-containing protein n=2 T... [more]
D7G567_ECTSI4.500e-3766.67Glyco_trans_2-like domain-containing protein n=2 T... [more]
A0A8J9SNR8_9CHLO2.260e-2454.02Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
A0A420YPE3_9PEZI6.920e-2357.14Glyco_trans_2-like domain-containing protein n=1 T... [more]
A0A7S0PX07_9STRA9.390e-2354.02Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
I0Z2J3_COCSC1.320e-2254.65Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
A0A383VVQ8_TETOB3.240e-2253.01Glyco_trans_2-like domain-containing protein n=2 T... [more]
A0A383WNV9_TETOB3.640e-2251.81Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A7J7Q341_9CHLO1.520e-2154.22Glycosyl transferase family group 2-domain-contain... [more]
A0A383VWK9_TETOB5.290e-2151.81Glyco_trans_2-like domain-containing protein n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183744contigH-elongata_contig183744:57..1014 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930054.1511426-CDS-H-elongata_contig183744:58..2361622930054.1511426-CDS-H-elongata_contig183744:58..236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183744 59..236 -
1691679262.8885248-CDS-H-elongata_contig183744:58..2361691679262.8885248-CDS-H-elongata_contig183744:58..236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183744 59..236 -
1622930054.1658762-CDS-H-elongata_contig183744:874..10141622930054.1658762-CDS-H-elongata_contig183744:874..1014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183744 875..1014 -
1691679262.8957388-CDS-H-elongata_contig183744:874..10141691679262.8957388-CDS-H-elongata_contig183744:874..1014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183744 875..1014 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183744.4945.1prot_H-elongata_contig183744.4945.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig183744 59..1014 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig183744.4945.1

>prot_H-elongata_contig183744.4945.1 ID=prot_H-elongata_contig183744.4945.1|Name=mRNA_H-elongata_contig183744.4945.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
HTVTSGATPRTRGPASKKGLASLAPTRSSASGSTPTARARCSSTSLSTGL
AEVRSPISSGATSLPDASRGPRSCRWWGTWGRTWRWLIPSWASACTSHSV
CSTVSS
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mRNA from alignment at H-elongata_contig183744:57..1014-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig183744.4945.1 ID=mRNA_H-elongata_contig183744.4945.1|Name=mRNA_H-elongata_contig183744.4945.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=958bp|location=Sequence derived from alignment at H-elongata_contig183744:57..1014- (Himanthalia elongata Himel1 dioecious)
CACACAGTTACATCGGGCGCTACGCCACGTACACGGGGGCCGGCTTCCAA GAAGGGGTTAGCCTCACTTGCGCCGACGAGGTCATCCGCCTCAGGAAGTA CGCCTACGGCGCGTGCGAGATGCTCCTCAACAAGTTTAAGGTATGGAACG GGGCTTAACCTACGGCATGCAGCGTCCGGCGGTCATAATGCCTATATCGT GGCTCACGGATTTCTAGTTTGTGGTGAAGGCGTACACTGCTGTGTCGGGT TGGGAGGGGATGTTGGGGTAGGCGGGCGGGTTCGTTCGCAATCTTTTCTA TTCGGAAGAAGAGGCCGGGGACGTGCGAGGGGGGGGGGTGCGTTCGAAAT TTTTTCTATGCGGAAGAAGGGGCGGGGGACGGGGGGGGGGGGGGGGGGGC TCTGAATTTCATCCCCGCGAGCGCCGTCGGGTAAAAACTGGAGATTTAAT ATAACAGAACGATTGATCCCGGCACGGTGCGATTCGAAGAGGTTTTTATG GCGCCGCCTTTTTACAGCGGTCACGGTTCCCGCTCTACTCCCCCTCCCTC TTTCTTGTGACGAAAGAACGAAAGAATGTAACGGTAGCCCCTTTCTTCCT TCGGCTGCGCATGCCGTTTGTAGCGAACCTTGTGCCCGGTTTGCCCCCGC GTTATTTGAAAACACCGTGAACATATATCCATCCTTGCTTAAGCCTCATC ACCCCTCCCCCCCCTCCCCCCCCTCCCCTCTCCTCCGCTCCATTGCTGCA AAACCCCGACGACTCCGCTTCTTCGCAGCACTGGCCTTGCCGAGGTCCGA TCACCAATCTCTTCTGGAGCTACCTCTTTGCCCGATGCATCCCGTGGCCC TCGAAGCTGCAGATGGTGGGGTACCTGGGGACGTACCTGGCGATGGCTTA TTCCGTCGTGGGCATCTGCGTGTACGTCACACTCCGTATGTTCTACGGTG TCCTCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig183744:57..1014-

>mRNA_H-elongata_contig183744.4945.1 ID=mRNA_H-elongata_contig183744.4945.1|Name=mRNA_H-elongata_contig183744.4945.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig183744:57..1014- (Himanthalia elongata Himel1 dioecious)
CACACAGTTACATCGGGCGCTACGCCACGTACACGGGGGCCGGCTTCCAA
GAAGGGGTTAGCCTCACTTGCGCCGACGAGGTCATCCGCCTCAGGAAGTA
CGCCTACGGCGCGTGCGAGATGCTCCTCAACAAGTTTAAGCACACAGTTA
CATCGGGCGCTACGCCACGTACACGGGGGCCGGCTTCCAAGAAGGGGTTA
GCCTCACTTGCGCCGACGAGGTCATCCGCCTCAGGAAGTACGCCTACGGC
GCGTGCGAGATGCTCCTCAACAAGTTTAAGCACTGGCCTTGCCGAGGTCC
GATCACCAATCTCTTCTGGAGCTACCTCTTTGCCCGATGCATCCCGTGGC
CCTCGAAGCTGCAGATGGTGGGGTACCTGGGGACGTACCTGGCGATGGCT
TATTCCGTCGTGGGCATCTGCGTGTACGTCACACTCCGTATGTTCTACGG
TGTCCTCCCACTGGCCTTGCCGAGGTCCGATCACCAATCTCTTCTGGAGC
TACCTCTTTGCCCGATGCATCCCGTGGCCCTCGAAGCTGCAGATGGTGGG
GTACCTGGGGACGTACCTGGCGATGGCTTATTCCGTCGTGGGCATCTGCG
TGTACGTCACACTCCGTATGTTCTACGGTGTCCTCC
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