mRNA_H-elongata_contig18374.4944.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18374.4944.1
Unique NamemRNA_H-elongata_contig18374.4944.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig18374.4944.1 vs. uniprot
Match: A0A6H5L3P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3P7_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.130e-6
Identity = 35/93 (37.63%), Postives = 44/93 (47.31%), Query Frame = 1 
Query:    7 PGKNDLRWHTQCIRAVGRLIAEWALVHQPSLAARLVHALKKLLSVQSD--------EDRREPDA-------------NPPQPQWGFLNIGSLL 222
            P ++DL WH  C+R +  L +  AL H PSLAA LVHA  KLLSV           +  R P A             + PQ  WGF+   SL+
Sbjct:   36 PERDDLEWHLACLRTIRGLTSGGALSHVPSLAANLVHAFVKLLSVTGGGGTDALAADSGRHPAAAAGKKMDSSSGGISLPQHLWGFIGGASLV 128
[Close]
BLAST of mRNA_H-elongata_contig18374.4944.1 vs. uniprot
Match: D7G264_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G264_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 2.160e-5
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:    7 PGKNDLRWHTQCIRAVGRLIAEWALVHQPSLAARLVHALKKLLSV 141
            P ++DL WH  C+R +  L +  AL H P+LAA LVHA  KLLSV
Sbjct: 1071 PERDDLEWHLACLRTIRGLTSGGALSHVPALAANLVHAFVKLLSV 1115
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18374.4944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3P7_9PHAE1.130e-637.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G264_ECTSI2.160e-553.33Non-specific serine/threonine protein kinase n=1 T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18374contigH-elongata_contig18374:6179..6502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size325
Cds size324
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930054.03019-CDS-H-elongata_contig18374:6178..65021622930054.03019-CDS-H-elongata_contig18374:6178..6502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18374 6179..6502 +
1691679262.8806944-CDS-H-elongata_contig18374:6178..65021691679262.8806944-CDS-H-elongata_contig18374:6178..6502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18374 6179..6502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18374.4944.1prot_H-elongata_contig18374.4944.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18374 6179..6502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18374.4944.1

>prot_H-elongata_contig18374.4944.1 ID=prot_H-elongata_contig18374.4944.1|Name=mRNA_H-elongata_contig18374.4944.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
MGPGKNDLRWHTQCIRAVGRLIAEWALVHQPSLAARLVHALKKLLSVQSD
EDRREPDANPPQPQWGFLNIGSLLGSPESRDARAGSGEDRSRVESSSGDD
PSVVGEMG
back to top

mRNA from alignment at H-elongata_contig18374:6179..6502+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18374.4944.1 ID=mRNA_H-elongata_contig18374.4944.1|Name=mRNA_H-elongata_contig18374.4944.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig18374:6179..6502+ (Himanthalia elongata Himel1 dioecious)
ATGGGGCCGGGGAAGAATGACCTCCGGTGGCACACCCAGTGCATTCGTGC
CGTGGGGAGGCTTATCGCGGAATGGGCGCTGGTACACCAACCCTCTTTAG
CGGCGAGGCTGGTCCACGCGCTCAAGAAGCTCCTCTCTGTGCAGAGCGAC
GAGGATCGCCGAGAGCCCGATGCGAATCCCCCGCAGCCGCAATGGGGTTT
CCTAAACATTGGAAGTTTGTTGGGTTCGCCGGAAAGCCGCGACGCTAGGG
CGGGCTCTGGGGAAGATCGGTCTCGGGTGGAGTCTTCGAGCGGAGACGAT
CCGAGCGTGGTCGGTGAGATGGGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig18374:6179..6502+

>mRNA_H-elongata_contig18374.4944.1 ID=mRNA_H-elongata_contig18374.4944.1|Name=mRNA_H-elongata_contig18374.4944.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig18374:6179..6502+ (Himanthalia elongata Himel1 dioecious)
ATGGGGCCGGGGAAGAATGACCTCCGGTGGCACACCCAGTGCATTCGTGC
CGTGGGGAGGCTTATCGCGGAATGGGCGCTGGTACACCAACCCTCTTTAG
CGGCGAGGCTGGTCCACGCGCTCAAGAAGCTCCTCTCTGTGCAGAGCGAC
GAGGATCGCCGAGAGCCCGATGCGAATCCCCCGCAGCCGCAATGGGGTTT
CCTAAACATTGGAAGTTTGTTGGGTTCGCCGGAAAGCCGCGACGCTAGGG
CGGGCTCTGGGGAAGATCGGTCTCGGGTGGAGTCTTCGAGCGGAGACGAT
CCGAGCGTGGTCGGTGAGATGGGAATGGGGCCGGGGAAGAATGACCTCCG
GTGGCACACCCAGTGCATTCGTGCCGTGGGGAGGCTTATCGCGGAATGGG
CGCTGGTACACCAACCCTCTTTAGCGGCGAGGCTGGTCCACGCGCTCAAG
AAGCTCCTCTCTGTGCAGAGCGACGAGGATCGCCGAGAGCCCGATGCGAA
TCCCCCGCAGCCGCAATGGGGTTTCCTAAACATTGGAAGTTTGTTGGGTT
CGCCGGAAAGCCGCGACGCTAGGGCGGGCTCTGGGGAAGATCGGTCTCGG
GTGGAGTCTTCGAGCGGAGACGATCCGAGCGTGGTCGGTGAGATGGGA
back to top