mRNA_H-elongata_contig183627.4939.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig183627.4939.1
Unique NamemRNA_H-elongata_contig183627.4939.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig183627.4939.1 vs. uniprot
Match: D7FUS3_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUS3_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 3.750e-29
Identity = 58/89 (65.17%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    1 QQLAEADAEAF-EPSDGIAAKVDAPSPIFLRLWVSILPWRLYEGLGARTVEALGLDPTKGVQVMLTADQHYTKSSARPRVKWVRQVAPD 264
            + LAEADA AF E SDG+ A+V+ PS   +RLW+ + PWRLYEGLG+RTVEALGLDP KGV VMLT DQ+YT S+  P V+W+RQVAP+
Sbjct:  109 KDLAEADAGAFVEESDGMFARVETPSTHLVRLWIGVKPWRLYEGLGSRTVEALGLDPLKGVMVMLTTDQYYTLSNKCPGVRWLRQVAPE 197
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BLAST of mRNA_H-elongata_contig183627.4939.1 vs. uniprot
Match: A0A6H5JHW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHW3_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.110e-27
Identity = 59/95 (62.11%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:    1 QQLAEADAEAF-EPSDGIAAKVDAPSPIFLRLWVSILPWRLYEGLGARTVEALGLDPTKGVQVMLTADQHYTKSSARPRVKWVRQVAPDAANGNM 282
            + LA  DA A  E  DG+AA+V A S   LRLWV + PWRLY  L +RTVEALGLDP KGV VMLT DQHYT S+ RP VKW+RQV PD   G+M
Sbjct:    9 KDLANGDALAINEGLDGVAARVQARSTYQLRLWVVVQPWRLYNHLSSRTVEALGLDPMKGVMVMLTTDQHYTLSTVRPEVKWLRQVHPDKVEGSM 103
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BLAST of mRNA_H-elongata_contig183627.4939.1 vs. uniprot
Match: D7G896_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G896_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.280e-13
Identity = 48/90 (53.33%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:   10 AEADAEAF-EPSDGIAAKVDAPSPIFLRLWVSILPWRLYEGLGART-VEALGLDPTKGVQVMLTADQHYTKSSARPRVKWVRQVAPDAAN 273
            A ADA+ F +  DGI A+V   S +   LWV I P RL EG    T VE +GLDP+KGV VMLT D  YT SS  P+V W RQVA  A N
Sbjct:   89 AHADADEFIDGVDGITARVQLSS-VLTNLWVYIDPRRLSEGRALGTSVETVGLDPSKGVVVMLTTDYGYTSSSKCPKVLWARQVARAAMN 177
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BLAST of mRNA_H-elongata_contig183627.4939.1 vs. uniprot
Match: A0A6H5J7F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7F0_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.960e-13
Identity = 47/88 (53.41%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:   10 AEADAEAF-EPSDGIAAKVDAPSPIFLRLWVSILPWRLYEGLGART-VEALGLDPTKGVQVMLTADQHYTKSSARPRVKWVRQVAPDA 267
            A+ADA+ F +  DGI A+V   S +   LWV I P RL EG    T VE +GLDP KGV VMLT D  YT SS  P+V W RQVA  A
Sbjct:   91 AQADADEFIDGVDGITARVQLSSAL-TNLWVYIDPRRLSEGRAPGTRVETVGLDPRKGVVVMLTTDHDYTSSSKCPKVLWARQVARTA 177
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BLAST of mRNA_H-elongata_contig183627.4939.1 vs. uniprot
Match: A0A6H5JA28_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA28_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 6.160e-13
Identity = 44/88 (50.00%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:   10 AEADAEAF-EPSDGIAAKVDAPSPIFLRLWVSILPWRLYEGLGART-VEALGLDPTKGVQVMLTADQHYTKSSARPRVKWVRQVAPDA 267
            AE DA+ F +  DGI+A+V   SP    +WV + P RL EG  + T V+ +GLDP+KGV VMLT    Y  S   P+VKW RQVAP A
Sbjct:   92 AEVDADEFIDGVDGISARVHL-SPALTNIWVYVGPRRLSEGRASGTCVKTVGLDPSKGVLVMLTTPHDYISSGEFPQVKWARQVAPAA 178
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BLAST of mRNA_H-elongata_contig183627.4939.1 vs. uniprot
Match: D7FUS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUS6_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 9.710e-13
Identity = 44/88 (50.00%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:   10 AEADAEAF-EPSDGIAAKVDAPSPIFLRLWVSILPWRLYEGLGART-VEALGLDPTKGVQVMLTADQHYTKSSARPRVKWVRQVAPDA 267
            AE DA+ F +  DGI+A V   SP    +WV + P RL EG    T V+ +GLDP+KGV VMLT    Y  S   P+VKW RQVAP A
Sbjct:   92 AEVDADEFIDGVDGISASVQL-SPTLTNVWVYVDPRRLSEGRAPGTCVKTVGLDPSKGVVVMLTTPHDYMSSGKIPQVKWARQVAPTA 178
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183627.4939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FUS3_ECTSI3.750e-2965.17PARP catalytic domain-containing protein n=1 Tax=E... [more]
A0A6H5JHW3_9PHAE1.110e-2762.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G896_ECTSI1.280e-1353.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7F0_9PHAE2.960e-1353.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA28_9PHAE6.160e-1350.00PARP catalytic domain-containing protein n=1 Tax=E... [more]
D7FUS6_ECTSI9.710e-1350.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183627contigH-elongata_contig183627:44..1070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue2e-24
Seed eggNOG ortholog2880.D7FUS3
Preferred namePARP8
KEGG koko:K15258
GOsGO:0005575,GO:0005622,GO:0005623,GO:0007275,GO:0007399,GO:0008150,GO:0009987,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0022008,GO:0022603,GO:0022604,GO:0030154,GO:0031344,GO:0031346,GO:0032501,GO:0032502,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048814,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050773,GO:0050775,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0060284,GO:0065007,GO:0120035,GO:1900006,GO:2000026
EggNOG free text desc.NAD ADP-ribosyltransferase activity
EggNOG OGs28HD2@1,2QPRC@2759
EC2.4.2.30
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPoly(ADP-ribose) polymerase, catalytic domain
Ec32 orthologEc-19_004120.4
Exons2
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930053.642206-CDS-H-elongata_contig183627:43..2261622930053.642206-CDS-H-elongata_contig183627:43..226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183627 44..226 +
1691679262.696085-CDS-H-elongata_contig183627:43..2261691679262.696085-CDS-H-elongata_contig183627:43..226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183627 44..226 +
1622930053.660556-CDS-H-elongata_contig183627:971..10701622930053.660556-CDS-H-elongata_contig183627:971..1070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183627 972..1070 +
1691679262.7176309-CDS-H-elongata_contig183627:971..10701691679262.7176309-CDS-H-elongata_contig183627:971..1070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183627 972..1070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183627.4939.1prot_H-elongata_contig183627.4939.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig183627 44..1070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig183627.4939.1

>prot_H-elongata_contig183627.4939.1 ID=prot_H-elongata_contig183627.4939.1|Name=mRNA_H-elongata_contig183627.4939.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
QQLAEADAEAFEPSDGIAAKVDAPSPIFLRLWVSILPWRLYEGLGARTVE
ALGLDPTKGVQVMLTADQHYTKSSARPRVKWVRQVAPDAANGNM
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mRNA from alignment at H-elongata_contig183627:44..1070+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig183627.4939.1 ID=mRNA_H-elongata_contig183627.4939.1|Name=mRNA_H-elongata_contig183627.4939.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1027bp|location=Sequence derived from alignment at H-elongata_contig183627:44..1070+ (Himanthalia elongata Himel1 dioecious)
CAGCAACTTGCAGAGGCCGACGCCGAGGCATTCGAGCCCTCAGACGGCAT
CGCCGCAAAGGTGGACGCCCCTTCCCCCATCTTCTTGCGGCTGTGGGTTT
CGATTCTCCCCTGGAGGCTTTACGAGGGCCTGGGGGCGAGGACGGTCGAG
GCGCTTGGACTCGACCCGACGAAAGGCGTGCAGGTATTGTACAACAAGAA
CTTGCAACACGCAACCGCATGGATGTTGAAACCTCCGGTTCAACACTCAG
CCAAATTACCATTTACTGCATGCTATCGTTGACCCACTACGATCGTCGGG
AAGGAGCTCGTCGATGTGGATATATTTTTGTCGTGAATGGTGCTTCCGGG
TTGGCATTTTTCGTCATCGAAACACTACCGCAGTTGCCGTTGCGTTGTAG
TAGCAGTGTGCGTCATGTTTCTAATATCTTGAGATTCAAAAGTTCGGGCT
GTAGGACCTTTCTGGCTTCCAAAATTCAAAGTTCCAGGTTGTTAGATCTT
GTACTGTACCCAATCACCGTGTACCCAATCACCGTGTAATCTCGCTTTGT
TTCTATAACGGGTGGAGGCGTCGTGCAATCCTCATTATCGACATTGTACT
ATTATTGGGAGGGGGGGAGAATATTTAGTCCTCCCCCCCCCCGCGCCCGC
TCGATTAAAGGGGGCACCGAAGGGGCATCGAGAGGTCAAGGGGAAGGGAG
TGTGGTGTGATGTGGTGAGGTGAGGTGAGGTATACCGCCTCTCTGCCGAC
GACTCTCTTCACAAAACGTTTTTACAGTACTTGGCCGATTCGCGCGCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGACGTACATATGTATCGA
AGTAGCTAGTGCTCTCACTGTGGGTTGTGATGACGACCTGCGGCCTAAAC
TTGAGATCCCTCTTGGTAAAAACTCAAGGTTATGCTAACGGCAGACCAGC
ACTACACGAAGTCAAGCGCCCGTCCGAGAGTGAAGTGGGTACGACAGGTT
GCGCCCGACGCCGCCAACGGAAACATG
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Coding sequence (CDS) from alignment at H-elongata_contig183627:44..1070+

>mRNA_H-elongata_contig183627.4939.1 ID=mRNA_H-elongata_contig183627.4939.1|Name=mRNA_H-elongata_contig183627.4939.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig183627:44..1070+ (Himanthalia elongata Himel1 dioecious)
CAGCAACTTGCAGAGGCCGACGCCGAGGCATTCGAGCCCTCAGACGGCAT
CGCCGCAAAGGTGGACGCCCCTTCCCCCATCTTCTTGCGGCTGTGGGTTT
CGATTCTCCCCTGGAGGCTTTACGAGGGCCTGGGGGCGAGGACGGTCGAG
GCGCTTGGACTCGACCCGACGAAAGGCGTGCAGCAGCAACTTGCAGAGGC
CGACGCCGAGGCATTCGAGCCCTCAGACGGCATCGCCGCAAAGGTGGACG
CCCCTTCCCCCATCTTCTTGCGGCTGTGGGTTTCGATTCTCCCCTGGAGG
CTTTACGAGGGCCTGGGGGCGAGGACGGTCGAGGCGCTTGGACTCGACCC
GACGAAAGGCGTGCAGGTTATGCTAACGGCAGACCAGCACTACACGAAGT
CAAGCGCCCGTCCGAGAGTGAAGTGGGTACGACAGGTTGCGCCCGACGCC
GCCAACGGAAACATGGTTATGCTAACGGCAGACCAGCACTACACGAAGTC
AAGCGCCCGTCCGAGAGTGAAGTGGGTACGACAGGTTGCGCCCGACGCCG
CCAACGGAAACATG
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