mRNA_H-elongata_contig183555.4937.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig183555.4937.1
Unique NamemRNA_H-elongata_contig183555.4937.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig183555.4937.1 vs. uniprot
Match: D7FLZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLZ7_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 5.440e-32
Identity = 61/79 (77.22%), Postives = 66/79 (83.54%), Query Frame = 1 
Query:    1 KGIVWLDDGDFEPALQCFEEACTVYGANASGHFCKTVALTKLGRFTEALGAMECVLCRRGGTADDFVLRGKIRWAVGMV 237
            +G+VWLD GD E AL CFEEACTV GANAS HFCKTVAL KLGRF EAL ++E VL RR GTADD+VLR KIRWAVGMV
Sbjct:  236 QGMVWLDGGDSEAALACFEEACTVDGANASVHFCKTVALVKLGRFVEALRSVEAVLGRRKGTADDYVLRAKIRWAVGMV 314
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BLAST of mRNA_H-elongata_contig183555.4937.1 vs. uniprot
Match: A0A6H5K4B5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4B5_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 6.970e-32
Identity = 60/79 (75.95%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:    1 KGIVWLDDGDFEPALQCFEEACTVYGANASGHFCKTVALTKLGRFTEALGAMECVLCRRGGTADDFVLRGKIRWAVGMV 237
            +G+VWLD GD E AL CFEEACTV GANAS H CKTVAL KLGRF EAL ++E VL RR GTADD+VLR KIRWAVGMV
Sbjct:  258 EGMVWLDGGDSEAALACFEEACTVDGANASVHSCKTVALVKLGRFVEALRSVEAVLGRRKGTADDYVLRAKIRWAVGMV 336
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183555.4937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLZ7_ECTSI5.440e-3277.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4B5_9PHAE6.970e-3275.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183555contigH-elongata_contig183555:20..484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.9
Seed ortholog evalue2.1e-27
Seed eggNOG ortholog2880.D7FLZ7
Preferred nameUNC45A
KEGG koko:K19680,ko:K21991
EggNOG free text desc.cellular component assembly
EggNOG OGsCOG0457@1,KOG1124@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110
Hectar predicted targeting categoryother localisation
Exons2
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930053.5487714-CDS-H-elongata_contig183555:19..1331622930053.5487714-CDS-H-elongata_contig183555:19..133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183555 20..133 -
1691679262.6579278-CDS-H-elongata_contig183555:19..1331691679262.6579278-CDS-H-elongata_contig183555:19..133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183555 20..133 -
1622930053.5650449-CDS-H-elongata_contig183555:361..4841622930053.5650449-CDS-H-elongata_contig183555:361..484Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183555 362..484 -
1691679262.6743908-CDS-H-elongata_contig183555:361..4841691679262.6743908-CDS-H-elongata_contig183555:361..484Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183555 362..484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183555.4937.1prot_H-elongata_contig183555.4937.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig183555 20..484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig183555.4937.1

>prot_H-elongata_contig183555.4937.1 ID=prot_H-elongata_contig183555.4937.1|Name=mRNA_H-elongata_contig183555.4937.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
KGIVWLDDGDFEPALQCFEEACTVYGANASGHFCKTVALTKLGRFTEALG
AMECVLCRRGGTADDFVLRGKIRWAVGMV
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mRNA from alignment at H-elongata_contig183555:20..484-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig183555.4937.1 ID=mRNA_H-elongata_contig183555.4937.1|Name=mRNA_H-elongata_contig183555.4937.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=465bp|location=Sequence derived from alignment at H-elongata_contig183555:20..484- (Himanthalia elongata Himel1 dioecious)
AAGGGCATCGTATGGTTGGACGACGGCGACTTTGAGCCTGCTCTACAGTG
CTTTGAAGAGGCATGCACAGTGTATGGCGCCAACGCCTCCGGTCACTTCT
GCAAAACCGTCGCTCTCACCAAGGTACAACGAATGCCGTACGAACAGCCG
CCTCTTTTCGGCGGAGATGGTTTTTTAAAATAAGATGCTTATTTTGGTGC
TCGGCCCAAACAACATCATAATAGATATTTTGTCGATGCTCAAGCGCGCA
CTGAAAGCCTACAGTTTTTCCCTCCCAGTAATATGTCGTTTGAGTGTGCA
CGGATTGCGCTTCACCTGCGCGCCGTTCATCATTCGGTTTGGCCGCTGCA
GCTAGGGAGATTCACCGAGGCGCTCGGGGCGATGGAGTGTGTACTTTGCC
GCCGGGGAGGCACGGCTGACGACTTCGTCTTAAGAGGAAAGATACGATGG
GCCGTCGGGATGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig183555:20..484-

>mRNA_H-elongata_contig183555.4937.1 ID=mRNA_H-elongata_contig183555.4937.1|Name=mRNA_H-elongata_contig183555.4937.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig183555:20..484- (Himanthalia elongata Himel1 dioecious)
AAGGGCATCGTATGGTTGGACGACGGCGACTTTGAGCCTGCTCTACAGTG
CTTTGAAGAGGCATGCACAGTGTATGGCGCCAACGCCTCCGGTCACTTCT
GCAAAACCGTCGCTCTCACCAAGAAGGGCATCGTATGGTTGGACGACGGC
GACTTTGAGCCTGCTCTACAGTGCTTTGAAGAGGCATGCACAGTGTATGG
CGCCAACGCCTCCGGTCACTTCTGCAAAACCGTCGCTCTCACCAAGCTAG
GGAGATTCACCGAGGCGCTCGGGGCGATGGAGTGTGTACTTTGCCGCCGG
GGAGGCACGGCTGACGACTTCGTCTTAAGAGGAAAGATACGATGGGCCGT
CGGGATGGTGCTAGGGAGATTCACCGAGGCGCTCGGGGCGATGGAGTGTG
TACTTTGCCGCCGGGGAGGCACGGCTGACGACTTCGTCTTAAGAGGAAAG
ATACGATGGGCCGTCGGGATGGTG
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