mRNA_H-elongata_contig183492.4936.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig183492.4936.1
Unique NamemRNA_H-elongata_contig183492.4936.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig183492.4936.1 vs. uniprot
Match: D7FNG4_ECTSI (5-oxoprolinase (ATP-hydrolysing) 5-oxoprolinase (ATP-hydrolysing) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNG4_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 3.320e-23
Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 FRFSIDRGGTFTDVYAEVPGAKSFRVLKLLSEDPDNYRDAPREGVRRILE 150
            FRFSIDRGGTFTDVYAEVPGAK FRVLKLLSEDP NY DAPREGVRRILE
Sbjct:   19 FRFSIDRGGTFTDVYAEVPGAKGFRVLKLLSEDPQNYPDAPREGVRRILE 68
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BLAST of mRNA_H-elongata_contig183492.4936.1 vs. uniprot
Match: A0A7V5FRG2_9DELT (Hydant_A_N domain-containing protein (Fragment) n=1 Tax=Desulfobulbaceae bacterium TaxID=2053307 RepID=A0A7V5FRG2_9DELT)

HSP 1 Score: 89.4 bits (220), Expect = 5.660e-22
Identity = 41/49 (83.67%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 FRFSIDRGGTFTDVYAEVPGAKSFRVLKLLSEDPDNYRDAPREGVRRIL 147
            FRFSIDRGGTFTDVYAEVPG   F V+KLLSEDP NY DAPREG+RRIL
Sbjct:   11 FRFSIDRGGTFTDVYAEVPGDPGFTVVKLLSEDPANYADAPREGIRRIL 59
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BLAST of mRNA_H-elongata_contig183492.4936.1 vs. uniprot
Match: A0A7S3YE70_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YE70_HETAK)

HSP 1 Score: 90.5 bits (223), Expect = 1.650e-21
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 FRFSIDRGGTFTDVYAEVPGAKSFRVLKLLSEDPDNYRDAPREGVRRILE 150
            F+FSIDRGGTFTD+YAE+PG K FRV+KLLSEDP NY DAPREG+RRILE
Sbjct:   62 FKFSIDRGGTFTDIYAEIPG-KGFRVMKLLSEDPSNYPDAPREGIRRILE 110
[Close]
BLAST of mRNA_H-elongata_contig183492.4936.1 vs. uniprot
Match: A0A348URQ0_9DELT (5-oxoprolinase (Fragment) n=1 Tax=Desulfobacter sp. TaxID=2294 RepID=A0A348URQ0_9DELT)

HSP 1 Score: 92.8 bits (229), Expect = 2.280e-21
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 FRFSIDRGGTFTDVYAEVPGAKSFRVLKLLSEDPDNYRDAPREGVRRILE 150
            FRFS+DRGGTFTD+YAEVPG   FRV+KLLSEDP NY DAPREG+RRILE
Sbjct:    7 FRFSVDRGGTFTDIYAEVPGEPGFRVIKLLSEDPRNYPDAPREGIRRILE 56
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BLAST of mRNA_H-elongata_contig183492.4936.1 vs. uniprot
Match: A0A2D5VAR1_9DELT (5-oxoprolinase n=7 Tax=Proteobacteria TaxID=1224 RepID=A0A2D5VAR1_9DELT)

HSP 1 Score: 94.4 bits (233), Expect = 2.600e-21
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 FRFSIDRGGTFTDVYAEVPGAKSFRVLKLLSEDPDNYRDAPREGVRRILE 150
            FRFSIDRGGTFTDVYAEVPG   FRV+KLLSEDP NY DAPREG+RRILE
Sbjct:    6 FRFSIDRGGTFTDVYAEVPGESGFRVVKLLSEDPQNYPDAPREGIRRILE 55
[Close]
BLAST of mRNA_H-elongata_contig183492.4936.1 vs. uniprot
Match: A0A2D5SN36_9DELT (5-oxoprolinase n=3 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D5SN36_9DELT)

HSP 1 Score: 94.4 bits (233), Expect = 2.600e-21
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 FRFSIDRGGTFTDVYAEVPGAKSFRVLKLLSEDPDNYRDAPREGVRRILE 150
            FRFSIDRGGTFTDVYAEVPG   FRV+KLLSEDP NY DAPREG+RRILE
Sbjct:    6 FRFSIDRGGTFTDVYAEVPGESGFRVVKLLSEDPQNYPDAPREGIRRILE 55
[Close]
BLAST of mRNA_H-elongata_contig183492.4936.1 vs. uniprot
Match: UPI001A9AFA88 (hydantoinase B/oxoprolinase family protein n=1 Tax=Desulfonema magnum TaxID=45655 RepID=UPI001A9AFA88)

HSP 1 Score: 94.4 bits (233), Expect = 2.600e-21
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 FRFSIDRGGTFTDVYAEVPGAKSFRVLKLLSEDPDNYRDAPREGVRRILE 150
            FRFSIDRGGTFTD+YAE PG+  FRV+KLLSEDP+NY DAPREG+RRILE
Sbjct:    7 FRFSIDRGGTFTDIYAETPGSPGFRVIKLLSEDPENYADAPREGIRRILE 56
[Close]
BLAST of mRNA_H-elongata_contig183492.4936.1 vs. uniprot
Match: A0A2D5TUE0_9PROT (5-oxoprolinase n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2D5TUE0_9PROT)

HSP 1 Score: 94.4 bits (233), Expect = 2.600e-21
Identity = 43/49 (87.76%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 FRFSIDRGGTFTDVYAEVPGAKSFRVLKLLSEDPDNYRDAPREGVRRIL 147
            FRFSIDRGGTFTDVYAEVPG   FRV KLLSEDPDNY DAPREG+RRIL
Sbjct:    6 FRFSIDRGGTFTDVYAEVPGESGFRVAKLLSEDPDNYDDAPREGIRRIL 54
[Close]
BLAST of mRNA_H-elongata_contig183492.4936.1 vs. uniprot
Match: A0A381S595_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381S595_9ZZZZ)

HSP 1 Score: 94.4 bits (233), Expect = 2.600e-21
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 FRFSIDRGGTFTDVYAEVPGAKSFRVLKLLSEDPDNYRDAPREGVRRILE 150
            FRFSIDRGGTFTDVYAEVPG   FRV+KLLSEDP NY DAPREG+RRILE
Sbjct:    6 FRFSIDRGGTFTDVYAEVPGESGFRVVKLLSEDPQNYPDAPREGIRRILE 55
[Close]
BLAST of mRNA_H-elongata_contig183492.4936.1 vs. uniprot
Match: A0A432G1I9_9DELT (5-oxoprolinase n=4 Tax=root TaxID=1 RepID=A0A432G1I9_9DELT)

HSP 1 Score: 94.0 bits (232), Expect = 3.540e-21
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 FRFSIDRGGTFTDVYAEVPGAKSFRVLKLLSEDPDNYRDAPREGVRRILE 150
            FRFSIDRGGTFTDVYAEVPG   FRV+KLLSEDP NY DAPREG+RRILE
Sbjct:    6 FRFSIDRGGTFTDVYAEVPGEPGFRVVKLLSEDPQNYPDAPREGIRRILE 55
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183492.4936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNG4_ECTSI3.320e-2394.005-oxoprolinase (ATP-hydrolysing) 5-oxoprolinase (A... [more]
A0A7V5FRG2_9DELT5.660e-2283.67Hydant_A_N domain-containing protein (Fragment) n=... [more]
A0A7S3YE70_HETAK1.650e-2182.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A348URQ0_9DELT2.280e-2182.005-oxoprolinase (Fragment) n=1 Tax=Desulfobacter sp... [more]
A0A2D5VAR1_9DELT2.600e-2186.005-oxoprolinase n=7 Tax=Proteobacteria TaxID=1224 R... [more]
A0A2D5SN36_9DELT2.600e-2186.005-oxoprolinase n=3 Tax=Deltaproteobacteria bacteri... [more]
UPI001A9AFA882.600e-2182.00hydantoinase B/oxoprolinase family protein n=1 Tax... [more]
A0A2D5TUE0_9PROT2.600e-2187.765-oxoprolinase n=2 Tax=Proteobacteria TaxID=1224 R... [more]
A0A381S595_9ZZZZ2.600e-2186.00Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A432G1I9_9DELT3.540e-2186.005-oxoprolinase n=4 Tax=root TaxID=1 RepID=A0A432G1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183492contigH-elongata_contig183492:541..690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue6.7e-19
Seed eggNOG ortholog2880.D7FNG4
KEGG rclassRC00553
KEGG koko:K01469
KEGG ReactionR00251
KEGG Pathwayko00480,map00480
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006518,GO:0006575,GO:0006749,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0017168,GO:0034641,GO:0042221,GO:0043603,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051186,GO:0051716,GO:0070887,GO:0071704,GO:0097237,GO:0098754,GO:1901564,GO:1990748
EggNOG free text desc.5-oxoprolinase (ATP-hydrolyzing) activity
EggNOG OGsCOG0145@1,KOG1939@2759
EC3.5.2.9
COG Functional cat.EQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930053.498065-CDS-H-elongata_contig183492:540..6901622930053.498065-CDS-H-elongata_contig183492:540..690Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183492 541..690 +
1691679262.6290631-CDS-H-elongata_contig183492:540..6901691679262.6290631-CDS-H-elongata_contig183492:540..690Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183492 541..690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183492.4936.1prot_H-elongata_contig183492.4936.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig183492 541..690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig183492.4936.1

>prot_H-elongata_contig183492.4936.1 ID=prot_H-elongata_contig183492.4936.1|Name=mRNA_H-elongata_contig183492.4936.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
FRFSIDRGGTFTDVYAEVPGAKSFRVLKLLSEDPDNYRDAPREGVRRILE
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mRNA from alignment at H-elongata_contig183492:541..690+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig183492.4936.1 ID=mRNA_H-elongata_contig183492.4936.1|Name=mRNA_H-elongata_contig183492.4936.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at H-elongata_contig183492:541..690+ (Himanthalia elongata Himel1 dioecious)
TTCCGTTTTTCGATCGATCGAGGAGGAACGTTTACTGATGTGTACGCCGA
GGTTCCCGGAGCCAAGAGCTTTCGAGTGCTGAAGCTTCTCAGCGAAGACC
CGGACAACTATCGCGACGCACCTCGAGAGGGTGTTAGGCGTATCTTAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig183492:541..690+

>mRNA_H-elongata_contig183492.4936.1 ID=mRNA_H-elongata_contig183492.4936.1|Name=mRNA_H-elongata_contig183492.4936.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig183492:541..690+ (Himanthalia elongata Himel1 dioecious)
TTCCGTTTTTCGATCGATCGAGGAGGAACGTTTACTGATGTGTACGCCGA
GGTTCCCGGAGCCAAGAGCTTTCGAGTGCTGAAGCTTCTCAGCGAAGACC
CGGACAACTATCGCGACGCACCTCGAGAGGGTGTTAGGCGTATCTTAGAG
TTCCGTTTTTCGATCGATCGAGGAGGAACGTTTACTGATGTGTACGCCGA
GGTTCCCGGAGCCAAGAGCTTTCGAGTGCTGAAGCTTCTCAGCGAAGACC
CGGACAACTATCGCGACGCACCTCGAGAGGGTGTTAGGCGTATCTTAGAG
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