mRNA_H-elongata_contig18340.4932.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18340.4932.1
Unique NamemRNA_H-elongata_contig18340.4932.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig18340.4932.1 vs. uniprot
Match: D7FPK4_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPK4_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 1.040e-55
Identity = 176/361 (48.75%), Postives = 205/361 (56.79%), Query Frame = 1 
Query:    1 DTTCAQGFCFIKYEDQRSTILAVDNCNGIELLGRTLRVDHKHKYSLPAEVRERAEKLEEERVARGEEPSTKGPQWRPGIAYEGKQFANEHDFHKGVDVFAAPNKGSGSSDEIEPVGAGVSGARGKESAAAKNERREXXXXXXXXXXXXXXXX----------------------KHKN---VGKKKTGESHAEDGLKRKKKKKDKRDDQVGRSHEDGEGGKERGXAXXXXXXXXXXXXRERGPKRNGGGGADAGGVWERGARMPG-GEFSGVVYASSNAVVNQP-------AAPASLALGKVLDWRGLGSTGRGRGAGGRSXXXXXXXXXXXXXXXXXXEG---------VNTIGGMNRRR 957
            DT  ++GFCFIKYE+Q+STILAVDN NGI+LLGRT+RVDHKHKYSLPAEVRE+AEK +EERVARGE PS KGPQWRPG+AYEGKQ A  H+FHKGVDVFA P +GSGSSD+ +    G  G  G+ +         XXXXXXXXXXXXXXXX                      +HK      +K  G +H +D              +  RS E    G   G              R + P      GADA G WERGAR PG G  SG    SS+   +QP       A P  L+ G V+DWRGLG    GR AGGR XXXXXXXXX      XXX           +N++GGM+RRR
Sbjct:   69 DTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQGSGSSDDSD----GAGGTLGESAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHKKDXXXEEKXEGRAHGKD--------------EKTRSSEHPRAGN--GGRGEERVGGRHDHRRGKEPPTGRSSGADASGAWERGARAPGDGPSSGGTPFSSS---SQPSGRAPALAPPVPLSSGNVMDWRGLG----GRAAGGRGXXXXXXXXXREGAGRXXXXXXXXXXXXXXMNSMGGMDRRR 402
[Close]
BLAST of mRNA_H-elongata_contig18340.4932.1 vs. uniprot
Match: A0A4D9D1V2_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V2_9STRA)

HSP 1 Score: 127 bits (320), Expect = 3.390e-30
Identity = 65/114 (57.02%), Postives = 83/114 (72.81%), Query Frame = 1 
Query:   13 AQGFCFIKYEDQRSTILAVDNCNGIELLGRTLRVDHKHKYSLPAEVRERAEKLEEERVARGEEPSTKGPQWRPGIAYEGKQFANEHDFHKGVDVFAAPNKGSGSSDEIEPVGAG 354
            ++GF F+KYEDQRSTILAVDN NGI+LL RTLRVDHK KY+LP EV E+AE+ E+ R+  GE+    GP+W+PG AYEGK+    HD  KGVD+FA   +G   ++E   V +G
Sbjct:   74 SKGFAFLKYEDQRSTILAVDNMNGIKLLERTLRVDHKEKYALPKEVLEKAEEKEKARLEAGEDGGGGGPRWKPGHAYEGKELVEGHDLSKGVDLFAPVQEGEVDAEEDGLVSSG 187
[Close]
BLAST of mRNA_H-elongata_contig18340.4932.1 vs. uniprot
Match: A0A7S2RL84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL84_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.370e-24
Identity = 56/108 (51.85%), Postives = 73/108 (67.59%), Query Frame = 1 
Query:   13 AQGFCFIKYEDQRSTILAVDNCNGIELLGRTLRVDHKHKYSLPAEVRERAEKLEEERVARGEE-PSTKGPQWRPGIAYEGKQFANEHDFHKGVDVFAAPNKGSGSSDE 333
            ++GF FIKYEDQRST+LAVDN NG+ELLGR +RVDH  KY LP+ +RE+ E  EE     G E    +  ++RPG AYEG + AN+ + HKGVD++  P+     S E
Sbjct:   75 SKGFAFIKYEDQRSTVLAVDNFNGVELLGRLIRVDHVAKYKLPSHLREKEEAEEENSGHYGPEGDGEEESKYRPGHAYEGAELANKFNIHKGVDLYGGPDDSDDGSGE 182
[Close]
BLAST of mRNA_H-elongata_contig18340.4932.1 vs. uniprot
Match: A0A835YJH4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH4_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.220e-22
Identity = 54/103 (52.43%), Postives = 70/103 (67.96%), Query Frame = 1 
Query:    1 DTTCAQGFCFIKYEDQRSTILAVDNCNGIELLGRTLRVDHKHKYSLPAEVRERAEKLEE---ERVARGEEPSTKGPQWRPGIAYEGKQFANEHDFHKGVDVFA 300
            DT  ++GF F+KYEDQRSTILAVDN NG +LLGR LRVDH  KY LP E++++ +  +E   E+   G EP +    W+PG AYEGK+    H   +GVDV+A
Sbjct:   69 DTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKELQDKEDAQQEGGGEQGGEGGEPRSAAA-WKPGHAYEGKEIRGSHTLAQGVDVWA 170
[Close]
BLAST of mRNA_H-elongata_contig18340.4932.1 vs. uniprot
Match: W2N0T6_PHYPR (RRM domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2N0T6_PHYPR)

HSP 1 Score: 101 bits (252), Expect = 1.610e-21
Identity = 56/101 (55.45%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:   13 AQGFCFIKYEDQRSTILAVDNCNGIELLGRTLRVDHKHKYSLPAEVRERAEKLEE-ERVARGEEPSTKGPQWRPGIAYEGKQFANEHDFHKGVDVFAAPNK 312
            ++GF FIK+EDQRSTILAVDN NG +LL R LRVDH  KY LP E++E ++  +E +R  RG           PG AYEGK+ A++ D HKGVDVFAAP +
Sbjct:   73 SKGFAFIKFEDQRSTILAVDNLNGFKLLDRVLRVDHVLKYKLPKELQEDSDSEDEGDRKQRG----------LPGHAYEGKELASDFDLHKGVDVFAAPEE 163
[Close]
BLAST of mRNA_H-elongata_contig18340.4932.1 vs. uniprot
Match: A0A1V9ZVW6_9STRA (U2 snRNP component IST3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVW6_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 3.610e-21
Identity = 53/100 (53.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 DTTCAQGFCFIKYEDQRSTILAVDNCNGIELLGRTLRVDHKHKYSLPAEVRER--AEKLEEERVARGEEPSTKGPQWRPGIAYEGKQFANEHDFHKGVDV 294
            +T  + GF FIKYED RST+LAVDN NG  LL RTLRVDH HKY LP E+R++  A+  EEE   RG+          PG AY+GK   N++D H+GVD 
Sbjct:   69 ETGKSMGFAFIKYEDHRSTVLAVDNFNGSTLLERTLRVDHVHKYKLPKEIRDKEDAQDFEEEEKLRGQ----------PGHAYKGKDLENKYDIHQGVDT 158
[Close]
BLAST of mRNA_H-elongata_contig18340.4932.1 vs. uniprot
Match: H3GUF3_PHYRM (RRM domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GUF3_PHYRM)

HSP 1 Score: 99.0 bits (245), Expect = 1.530e-20
Identity = 51/100 (51.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:   13 AQGFCFIKYEDQRSTILAVDNCNGIELLGRTLRVDHKHKYSLPAEVRERAEKLEEERVARGEEPSTKGPQWRPGIAYEGKQFANEHDFHKGVDVFAAPNK 312
            ++GF F+K++DQRST+LAVDN NG +LL R LRVDH  KY LP E++E ++  +E         + + P+  PG AYEGK+ A+  D HKGVDVFAAP +
Sbjct:   73 SKGFAFLKFQDQRSTVLAVDNLNGFKLLDRVLRVDHVLKYKLPKELQEDSDSEDE--------GADRRPRGLPGHAYEGKELASGFDLHKGVDVFAAPQE 164
[Close]
BLAST of mRNA_H-elongata_contig18340.4932.1 vs. uniprot
Match: G5A2U5_PHYSP (RRM domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A2U5_PHYSP)

HSP 1 Score: 97.1 bits (240), Expect = 3.650e-20
Identity = 57/137 (41.61%), Postives = 77/137 (56.20%), Query Frame = 1 
Query:   16 QGFCFIKYEDQRSTILAVDNCNGIELLGRTLRVDHKHKYSLPAEVRERAEKLEEERVARGEEPSTKGPQWRPGIAYEGKQFANEHDFHKGVDVFAAPNKGS------GSSDEIEPVGAGVSGARGKESAAAKNERRE 408
            +GF F+K+EDQRST+LAVDN NG  LL R LRVDH  KY LP E++E ++  ++E+  R        P+  PG AYEGK+ A++ D HKGVD      +G          DE        +G RG+   +A   RR+
Sbjct:   74 KGFAFLKFEDQRSTVLAVDNLNGFRLLDRVLRVDHVLKYKLPKELQEDSDSEDDEQTERR-------PRGLPGHAYEGKELASDFDLHKGVDKRRQEQRGKEEREAESKGDEAAAAAPSATGWRGRLEPSAPRPRRD 203
[Close]
BLAST of mRNA_H-elongata_contig18340.4932.1 vs. uniprot
Match: A0A6A3KRR2_9STRA (RRM domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KRR2_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 4.230e-20
Identity = 50/100 (50.00%), Postives = 67/100 (67.00%), Query Frame = 1 
Query:   13 AQGFCFIKYEDQRSTILAVDNCNGIELLGRTLRVDHKHKYSLPAEVRERAEKLEEERVARGEEPSTKGPQWRPGIAYEGKQFANEHDFHKGVDVFAAPNK 312
            ++GF F+K+EDQRST+LAVDN NG  LL R LRVDH  KY LP E++E ++          E+   + P+  PG AYEGK+ A++ D  +GVDVFAAP +
Sbjct:   73 SKGFAFVKFEDQRSTVLAVDNLNGFRLLDRVLRVDHVLKYKLPKELQEDSD---------SEDEQERRPRGLPGHAYEGKELASDFDLQQGVDVFAAPEE 163
[Close]
BLAST of mRNA_H-elongata_contig18340.4932.1 vs. uniprot
Match: A0A6G0X0J2_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0J2_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 4.470e-20
Identity = 53/102 (51.96%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    1 DTTCAQGFCFIKYEDQRSTILAVDNCNGIELLGRTLRVDHKHKYSLPAEVRERAEK---LEEERVARGEEPSTKGPQWRPGIAYEGKQFANEHDFHKGVDVF 297
            DT  + GFCFIKYE+  ST+LAVDN NG  LL R LRVDH HKY LP E+R++ +    L+++   RG+          PG AYEGK+ AN++D H+GVDVF
Sbjct:   69 DTGKSLGFCFIKYENHLSTVLAVDNFNGAMLLERMLRVDHVHKYKLPKELRDKEDDEGVLDDDAELRGQ----------PGHAYEGKELANKYDIHQGVDVF 160
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18340.4932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPK4_ECTSI1.040e-5548.75RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A4D9D1V2_9STRA3.390e-3057.02RRM domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S2RL84_9STRA3.370e-2451.85Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A835YJH4_9STRA2.220e-2252.43RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
W2N0T6_PHYPR1.610e-2155.45RRM domain-containing protein n=11 Tax=Phytophthor... [more]
A0A1V9ZVW6_9STRA3.610e-2153.00U2 snRNP component IST3 n=1 Tax=Thraustotheca clav... [more]
H3GUF3_PHYRM1.530e-2051.00RRM domain-containing protein n=1 Tax=Phytophthora... [more]
G5A2U5_PHYSP3.650e-2041.61RRM domain-containing protein n=1 Tax=Phytophthora... [more]
A0A6A3KRR2_9STRA4.230e-2050.00RRM domain-containing protein n=2 Tax=Phytophthora... [more]
A0A6G0X0J2_9STRA4.470e-2051.96RRM domain-containing protein n=1 Tax=Aphanomyces ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18340contigH-elongata_contig18340:5079..7054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score200.3
Seed ortholog evalue1.4e-48
Seed eggNOG ortholog2880.D7FPK4
Preferred nameRBMX2
KEGG koko:K07919,ko:K13107,ko:K14807
GOsGO:0000245,GO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005686,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006366,GO:0006396,GO:0006397,GO:0006401,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007623,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009299,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010638,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032268,GO:0032270,GO:0032501,GO:0032774,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0034248,GO:0034250,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0042162,GO:0042752,GO:0042789,GO:0042886,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043487,GO:0043488,GO:0043565,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045727,GO:0045893,GO:0045935,GO:0046483,GO:0046700,GO:0046907,GO:0048511,GO:0048518,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051028,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051641,GO:0051649,GO:0051972,GO:0051973,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070274,GO:0070727,GO:0071011,GO:0071013,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097167,GO:0097525,GO:0097659,GO:0120114,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1904353,GO:1904355,GO:1905661,GO:1905663,GO:1990904,GO:2000112,GO:2000278,GO:2000573,GO:2001141,GO:2001252
EggNOG free text desc.mRNA-containing ribonucleoprotein complex export from nucleus
EggNOG OGsKOG0126@1,KOG0126@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03041,ko04031,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-12_000920.1
Exons3
Model size960
Cds size960
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18340.4932.1prot_H-elongata_contig18340.4932.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18340 5079..7054 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930053.2046564-CDS-H-elongata_contig18340:5078..57261622930053.2046564-CDS-H-elongata_contig18340:5078..5726Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18340 5079..5726 -
1691679262.5147343-CDS-H-elongata_contig18340:5078..57261691679262.5147343-CDS-H-elongata_contig18340:5078..5726Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18340 5079..5726 -
1622930053.2170448-CDS-H-elongata_contig18340:5857..60221622930053.2170448-CDS-H-elongata_contig18340:5857..6022Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18340 5858..6022 -
1691679262.524417-CDS-H-elongata_contig18340:5857..60221691679262.524417-CDS-H-elongata_contig18340:5857..6022Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18340 5858..6022 -
1622930053.2276313-CDS-H-elongata_contig18340:6907..70541622930053.2276313-CDS-H-elongata_contig18340:6907..7054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18340 6908..7054 -
1691679262.5320263-CDS-H-elongata_contig18340:6907..70541691679262.5320263-CDS-H-elongata_contig18340:6907..7054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18340 6908..7054 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18340.4932.1

>prot_H-elongata_contig18340.4932.1 ID=prot_H-elongata_contig18340.4932.1|Name=mRNA_H-elongata_contig18340.4932.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=320bp
DTTCAQGFCFIKYEDQRSTILAVDNCNGIELLGRTLRVDHKHKYSLPAEV
RERAEKLEEERVARGEEPSTKGPQWRPGIAYEGKQFANEHDFHKGVDVFA
APNKGSGSSDEIEPVGAGVSGARGKESAAAKNERREAKRARKEARRESRQ
HKKHKNVGKKKTGESHAEDGLKRKKKKKDKRDDQVGRSHEDGEGGKERGK
APQDDHSDKKRDNRERGPKRNGGGGADAGGVWERGARMPGGEFSGVVYAS
SNAVVNQPAAPASLALGKVLDWRGLGSTGRGRGAGGRSGRGGREGGHGGG
RSGRGGEGVNTIGGMNRRR*
back to top

mRNA from alignment at H-elongata_contig18340:5079..7054-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18340.4932.1 ID=mRNA_H-elongata_contig18340.4932.1|Name=mRNA_H-elongata_contig18340.4932.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1976bp|location=Sequence derived from alignment at H-elongata_contig18340:5079..7054- (Himanthalia elongata Himel1 dioecious)
GACACCACCTGCGCGCAGGGTTTCTGTTTTATTAAATACGAGGATCAAAG
GAGCACCATTCTGGCGGTCGACAACTGTAATGGCATCGAGTTACTCGGGC
GGACGTTACGCGTCGATCACAAGCACAAGTATTCTCTCCCTGCAGAGGTG
AGCGAGCGTTTTTCAGCCCATTATGTCCTATCCTGTGACTGTTAGAGGGA
GTCAGTTCTTGGCGAATACCTTACCTTCGGGTGTTGGTAGCCTCGAGCTA
ATATTTTGCCTTCTGTTTTGTGGGTATATTGCAATAGGGCACGTCAAATC
ATTCCTAGTCTTTTGCGCAGACCCTTCGACCTCTATGGAATTGCAAAGTG
CTCCACTTTTTGTGTGTGCGTATCTGTCGCCCCGGTGGTTAGGTTGGTAA
CCTCGAAAACCCTGACATTGAGACGTGAGTTCGAATCTCGGCGCAGTCAC
ACGAACTGGGATTTTCTCTCACATCATGCCCAGCAAGTGGAGAACGATTA
TTTCGTGGTACACAAAATTCGACTTCACCGAAAATGGACGGCTGAAGGAT
TCTCGTGATAAAAAATTAATGCAAGCACCGCAGAAGGAAGGCGGAGAAAT
CATGTGTTACCTTCCTCCTGTGTGACCCCGACTGGTGCGTCCGAAAGTCT
GACGTCCAGAATAAATGGGATGACAACACCCAACATATGTTGTATGTATG
TGGTCATGATATATAGCAGAGTATGGATTAACCTTATATAGTTTCCAGTT
CTGCTCCTTGTCAGCTGAACAGGGAAAGTAAAGTTTCCCTGCCCCCGTTC
GCGTCTGAGAGTTTGTTTTATAGCGAGACGGTTTTGGCCGTCCCGTCTCG
CGATACCCCGCCCATTCTTTCCGCCCAGGCTGAATCTGCTATCAGGTACT
GTAGCTGCTGGGAGTTGTTTTTGGGGGTTCAGGGACATTGTTCTCGCAAA
TCAGAGAGCGTGTTGTGAGCCTTGGTGACAAGAGATGAGTTGAGTTCACG
GAGTACTGCTGAACGCTGTGATACTCTCGCAGGTGAGAGAGAGAGCCGAG
AAGCTTGAGGAAGAGAGAGTGGCTCGCGGCGAGGAGCCTTCGACCAAGGG
ACCGCAGTGGAGACCAGGCATTGCTTACGAGGGCAAGCAGTTCGCGAACG
AGCATGATTTCCATAAGGGTGTGGACGTGTTCGCCGCACCGAACAAGGTG
CGTAGGATTTTATTCGAGCAGCCGATGGCAGCGATCGATCCACTCTTGGA
TCCACGGATTCAGTTAGCCGCACACTAAATCTTGAGAGACAATGCTCGTT
GTTAAGTCGTATCAATTATTCCTCACAGGGATCCGGATCAAGCGATGAAA
TCGAACCTGTGGGGGCCGGTGTGAGTGGGGCGCGAGGGAAGGAGTCCGCA
GCGGCAAAGAACGAACGGCGAGAGGCAAAGAGGGCACGTAAAGAAGCACG
GAGAGAATCACGACAGCACAAGAAGCACAAGAACGTCGGAAAAAAGAAGA
CTGGCGAGAGCCACGCAGAAGACGGCCTCAAAAGAAAAAAGAAGAAAAAG
GACAAGAGAGACGATCAAGTTGGGCGATCTCACGAAGACGGCGAGGGGGG
CAAAGAACGAGGTAAAGCTCCTCAGGACGACCACAGCGACAAAAAACGTG
ATAATCGTGAGAGAGGTCCCAAAAGAAACGGCGGAGGGGGAGCAGATGCT
GGTGGTGTATGGGAGCGCGGAGCGAGGATGCCCGGGGGTGAGTTCTCTGG
CGTGGTCTATGCTTCGTCTAATGCTGTCGTAAACCAGCCAGCAGCACCCG
CGTCCCTTGCCCTAGGCAAAGTGTTGGACTGGAGAGGATTAGGCTCTACT
GGCAGAGGGAGAGGGGCGGGGGGGAGGAGCGGGAGGGGGGGAAGGGAAGG
TGGTCATGGCGGTGGCCGAAGTGGCCGTGGAGGTGAAGGGGTGAACACAA
TAGGGGGAATGAACCGTCGGCGATAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig18340:5079..7054-

>mRNA_H-elongata_contig18340.4932.1 ID=mRNA_H-elongata_contig18340.4932.1|Name=mRNA_H-elongata_contig18340.4932.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1920bp|location=Sequence derived from alignment at H-elongata_contig18340:5079..7054- (Himanthalia elongata Himel1 dioecious)
GACACCACCTGCGCGCAGGGTTTCTGTTTTATTAAATACGAGGATCAAAG
GAGCACCATTCTGGCGGTCGACAACTGTAATGGCATCGAGTTACTCGGGC
GGACGTTACGCGTCGATCACAAGCACAAGTATTCTCTCCCTGCAGAGGAC
ACCACCTGCGCGCAGGGTTTCTGTTTTATTAAATACGAGGATCAAAGGAG
CACCATTCTGGCGGTCGACAACTGTAATGGCATCGAGTTACTCGGGCGGA
CGTTACGCGTCGATCACAAGCACAAGTATTCTCTCCCTGCAGAGGTGAGA
GAGAGAGCCGAGAAGCTTGAGGAAGAGAGAGTGGCTCGCGGCGAGGAGCC
TTCGACCAAGGGACCGCAGTGGAGACCAGGCATTGCTTACGAGGGCAAGC
AGTTCGCGAACGAGCATGATTTCCATAAGGGTGTGGACGTGTTCGCCGCA
CCGAACAAGGTGAGAGAGAGAGCCGAGAAGCTTGAGGAAGAGAGAGTGGC
TCGCGGCGAGGAGCCTTCGACCAAGGGACCGCAGTGGAGACCAGGCATTG
CTTACGAGGGCAAGCAGTTCGCGAACGAGCATGATTTCCATAAGGGTGTG
GACGTGTTCGCCGCACCGAACAAGGGATCCGGATCAAGCGATGAAATCGA
ACCTGTGGGGGCCGGTGTGAGTGGGGCGCGAGGGAAGGAGTCCGCAGCGG
CAAAGAACGAACGGCGAGAGGCAAAGAGGGCACGTAAAGAAGCACGGAGA
GAATCACGACAGCACAAGAAGCACAAGAACGTCGGAAAAAAGAAGACTGG
CGAGAGCCACGCAGAAGACGGCCTCAAAAGAAAAAAGAAGAAAAAGGACA
AGAGAGACGATCAAGTTGGGCGATCTCACGAAGACGGCGAGGGGGGCAAA
GAACGAGGTAAAGCTCCTCAGGACGACCACAGCGACAAAAAACGTGATAA
TCGTGAGAGAGGTCCCAAAAGAAACGGCGGAGGGGGAGCAGATGCTGGTG
GTGTATGGGAGCGCGGAGCGAGGATGCCCGGGGGTGAGTTCTCTGGCGTG
GTCTATGCTTCGTCTAATGCTGTCGTAAACCAGCCAGCAGCACCCGCGTC
CCTTGCCCTAGGCAAAGTGTTGGACTGGAGAGGATTAGGCTCTACTGGCA
GAGGGAGAGGGGCGGGGGGGAGGAGCGGGAGGGGGGGAAGGGAAGGTGGT
CATGGCGGTGGCCGAAGTGGCCGTGGAGGTGAAGGGGTGAACACAATAGG
GGGAATGAACCGTCGGCGATAAGGATCCGGATCAAGCGATGAAATCGAAC
CTGTGGGGGCCGGTGTGAGTGGGGCGCGAGGGAAGGAGTCCGCAGCGGCA
AAGAACGAACGGCGAGAGGCAAAGAGGGCACGTAAAGAAGCACGGAGAGA
ATCACGACAGCACAAGAAGCACAAGAACGTCGGAAAAAAGAAGACTGGCG
AGAGCCACGCAGAAGACGGCCTCAAAAGAAAAAAGAAGAAAAAGGACAAG
AGAGACGATCAAGTTGGGCGATCTCACGAAGACGGCGAGGGGGGCAAAGA
ACGAGGTAAAGCTCCTCAGGACGACCACAGCGACAAAAAACGTGATAATC
GTGAGAGAGGTCCCAAAAGAAACGGCGGAGGGGGAGCAGATGCTGGTGGT
GTATGGGAGCGCGGAGCGAGGATGCCCGGGGGTGAGTTCTCTGGCGTGGT
CTATGCTTCGTCTAATGCTGTCGTAAACCAGCCAGCAGCACCCGCGTCCC
TTGCCCTAGGCAAAGTGTTGGACTGGAGAGGATTAGGCTCTACTGGCAGA
GGGAGAGGGGCGGGGGGGAGGAGCGGGAGGGGGGGAAGGGAAGGTGGTCA
TGGCGGTGGCCGAAGTGGCCGTGGAGGTGAAGGGGTGAACACAATAGGGG
GAATGAACCGTCGGCGATAA
back to top