mRNA_H-elongata_contig183399.4931.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig183399.4931.1
Unique NamemRNA_H-elongata_contig183399.4931.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig183399.4931.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 4.180e-19
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 1 
Query:   10 MRYIQVDTFVYLGSTISSVGDVSPEIKRRTSYAWNCFLKYSRAVYDNPYIAVADKVRFLKTELLEVMLYGCVTWTLSPGDFDKLREAHRRMLLTCL 297
            M + Q   FVYLG  I   G +  EI  R   A  CF + S+A+YD P   +  KVR L+ E++E +LYGCVTW L P ++ KLR AH   LL C+
Sbjct:  120 MVFKQKKDFVYLGGKICQDGSIEGEINHRVQRAHACFRRNSQAMYDRPGGPLRLKVRLLQAEVVETLLYGCVTWNLKPAEYRKLRSAHHFFLLRCI 215
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BLAST of mRNA_H-elongata_contig183399.4931.1 vs. uniprot
Match: A0A6H5L0G6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0G6_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.790e-18
Identity = 39/95 (41.05%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:   16 YIQVDTFVYLGSTISSVGDVSPEIKRRTSYAWNCFLKYSRAVYDNPYIAVADKVRFLKTELLEVMLYGCVTWTLSPGDFDKLREAHRRMLLTCLN 300
            Y Q D FVYLG TIS+ G    EI  R+  AW C+ + S ++YD        K+RFL+ E++E +LYGC +W+L+   + KL   HR+ L  C++
Sbjct:   92 YKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRFLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCID 186
[Close]
BLAST of mRNA_H-elongata_contig183399.4931.1 vs. uniprot
Match: A0A6H5K1L2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1L2_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.350e-18
Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = 1 
Query:   16 YIQVDTFVYLGSTISSVGDVSPEIKRRTSYAWNCFLKYSRAVYDNPYIAVADKVRFLKTELLEVMLYGCVTWTLSPGDFDKLREAHRRMLLTCL 297
            Y Q D FVYLG TIS+ G    EI  R+  AW C+ + S ++YD        K+R L+ E++E +LYGC +W+L+   + KL   HR+ L  C+
Sbjct:   28 YKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQRKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCI 121
[Close]
BLAST of mRNA_H-elongata_contig183399.4931.1 vs. uniprot
Match: A0A6H5KQQ1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ1_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 3.490e-18
Identity = 38/95 (40.00%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:   16 YIQVDTFVYLGSTISSVGDVSPEIKRRTSYAWNCFLKYSRAVYDNPYIAVADKVRFLKTELLEVMLYGCVTWTLSPGDFDKLREAHRRMLLTCLN 300
            Y Q D FVYLG TIS+ G    EI  R+  AW C+ + S ++YD        K+R L+ E++E +LYGC +W+L+   + KL   HR+ L  C++
Sbjct:   30 YKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRLLQAEVVEALLYGCASWSLTAEHYTKLNGTHRQFLTRCIS 124
[Close]
BLAST of mRNA_H-elongata_contig183399.4931.1 vs. uniprot
Match: A0A6H5JKH3_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH3_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 6.060e-18
Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = 1 
Query:   16 YIQVDTFVYLGSTISSVGDVSPEIKRRTSYAWNCFLKYSRAVYDNPYIAVADKVRFLKTELLEVMLYGCVTWTLSPGDFDKLREAHRRMLLTCL 297
            Y Q D FVYLG TIS+ G    EI  R+  AW C+ + S ++YD        K+R L+ E++E +LYGC +W+L+   + KL   HR+ L  C+
Sbjct:   64 YKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLARCI 157
[Close]
BLAST of mRNA_H-elongata_contig183399.4931.1 vs. uniprot
Match: A0A6H5L7Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y9_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 7.880e-18
Identity = 38/94 (40.43%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:   16 YIQVDTFVYLGSTISSVGDVSPEIKRRTSYAWNCFLKYSRAVYDNPYIAVADKVRFLKTELLEVMLYGCVTWTLSPGDFDKLREAHRRMLLTCL 297
            Y Q D FVYLG TIS+ G    EI  R+  AW C+ + S ++YD   +    K+R L+ E++E +LYGC +W+L+   + KL   HR+ L  C+
Sbjct:   35 YKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRKSASMYDRRRVDRKLKIRLLQAEVVETLLYGCASWSLTAEHYTKLIGTHRQFLTRCI 128
[Close]
BLAST of mRNA_H-elongata_contig183399.4931.1 vs. uniprot
Match: A0A6H5LP35_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LP35_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.030e-17
Identity = 38/94 (40.43%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:   16 YIQVDTFVYLGSTISSVGDVSPEIKRRTSYAWNCFLKYSRAVYDNPYIAVADKVRFLKTELLEVMLYGCVTWTLSPGDFDKLREAHRRMLLTCL 297
            Y Q D FVYLG TIS+ G    EI  R+  AW C+ + S ++YD        K+R L  E++E +LYGC +W+L+   + KL   HR+ L  C+
Sbjct:   31 YKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASIYDMRRANRQLKIRLLMAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCM 124
[Close]
BLAST of mRNA_H-elongata_contig183399.4931.1 vs. uniprot
Match: A0A6H5L5J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J5_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.150e-17
Identity = 39/94 (41.49%), Postives = 55/94 (58.51%), Query Frame = 1 
Query:   16 YIQVDTFVYLGSTISSVGDVSPEIKRRTSYAWNCFLKYSRAVYDNPYIAVADKVRFLKTELLEVMLYGCVTWTLSPGDFDKLREAHRRMLLTCL 297
            Y Q D FVYLG  IS+ G    EI  R+  AW CF + S ++YD P      K+R L+ E++E +LYGC +W+L+   + KL   HR+ L  C+
Sbjct:  115 YKQTDRFVYLGRAISADGKADREITSRSCRAWKCFRRNSASMYDRPRANRPLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCI 208
[Close]
BLAST of mRNA_H-elongata_contig183399.4931.1 vs. uniprot
Match: A0A6H5L020_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L020_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.430e-17
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:   16 YIQVDTFVYLGSTISSVGDVSPEIKRRTSYAWNCFLKYSRAVYDNPYIAVADKVRFLKTELLEVMLYGCVTWTLSPGDFDKLREAHRRMLLTCL 297
            Y Q D FVYLG TIS+ G V  EI  RT  AW C+ + S ++YD        K+R L+ E++E +LYGC +W+L+   + KL   HR+ L  C+
Sbjct:  552 YKQTDRFVYLGRTISADGKVDREITSRTCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCI 645
[Close]
BLAST of mRNA_H-elongata_contig183399.4931.1 vs. uniprot
Match: A0A6H5JZD4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZD4_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.630e-17
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:   16 YIQVDTFVYLGSTISSVGDVSPEIKRRTSYAWNCFLKYSRAVYDNPYIAVADKVRFLKTELLEVMLYGCVTWTLSPGDFDKLREAHRRMLLTCL 297
            Y Q D FVYLG TIS+ G    EI  R+  AW C+ + S ++YD        K+R L+ E++E +LYGC +W+L+   + KL E HR+ L  C+
Sbjct:  409 YKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTTEHYAKLNETHRQFLTRCI 502
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183399.4931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2J8_9PHAE4.180e-1944.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0G6_9PHAE1.790e-1841.05Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K1L2_9PHAE2.350e-1840.43Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KQQ1_9PHAE3.490e-1840.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JKH3_9PHAE6.060e-1840.43Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L7Y9_9PHAE7.880e-1840.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LP35_9PHAE1.030e-1740.43Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L5J5_9PHAE1.150e-1741.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L020_9PHAE1.430e-1742.55Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JZD4_9PHAE2.630e-1741.49Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183399contigH-elongata_contig183399:833..1132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size300
Cds size291
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930053.1526117-UTR-H-elongata_contig183399:832..8411622930053.1526117-UTR-H-elongata_contig183399:832..841Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig183399 833..841 +
1691679262.4949846-UTR-H-elongata_contig183399:832..8411691679262.4949846-UTR-H-elongata_contig183399:832..841Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig183399 833..841 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930053.163405-CDS-H-elongata_contig183399:841..11321622930053.163405-CDS-H-elongata_contig183399:841..1132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183399 842..1132 +
1691679262.5066905-CDS-H-elongata_contig183399:841..11321691679262.5066905-CDS-H-elongata_contig183399:841..1132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183399 842..1132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183399.4931.1prot_H-elongata_contig183399.4931.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig183399 842..1132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig183399.4931.1

>prot_H-elongata_contig183399.4931.1 ID=prot_H-elongata_contig183399.4931.1|Name=mRNA_H-elongata_contig183399.4931.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
MRYIQVDTFVYLGSTISSVGDVSPEIKRRTSYAWNCFLKYSRAVYDNPYI
AVADKVRFLKTELLEVMLYGCVTWTLSPGDFDKLREAHRRMLLTCLN
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mRNA from alignment at H-elongata_contig183399:833..1132+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig183399.4931.1 ID=mRNA_H-elongata_contig183399.4931.1|Name=mRNA_H-elongata_contig183399.4931.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at H-elongata_contig183399:833..1132+ (Himanthalia elongata Himel1 dioecious)
TCACATAATATGAGGTACATCCAAGTCGACACCTTCGTGTATCTTGGCAG
CACCATCAGCAGCGTTGGGGACGTCAGCCCTGAGATCAAACGCCGTACTA
GCTACGCCTGGAACTGCTTCCTCAAGTACAGCAGGGCGGTGTACGACAAC
CCATACATCGCAGTGGCAGACAAGGTCCGTTTCCTGAAGACGGAATTACT
CGAGGTCATGCTCTACGGCTGTGTGACCTGGACTCTTTCACCCGGCGACT
TCGACAAGCTGCGGGAAGCCCACCGCAGAATGCTGCTGACGTGCCTCAAT
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Coding sequence (CDS) from alignment at H-elongata_contig183399:833..1132+

>mRNA_H-elongata_contig183399.4931.1 ID=mRNA_H-elongata_contig183399.4931.1|Name=mRNA_H-elongata_contig183399.4931.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig183399:833..1132+ (Himanthalia elongata Himel1 dioecious)
ATGAGGTACATCCAAGTCGACACCTTCGTGTATCTTGGCAGCACCATCAG
CAGCGTTGGGGACGTCAGCCCTGAGATCAAACGCCGTACTAGCTACGCCT
GGAACTGCTTCCTCAAGTACAGCAGGGCGGTGTACGACAACCCATACATC
GCAGTGGCAGACAAGGTCCGTTTCCTGAAGACGGAATTACTCGAGGTCAT
GCTCTACGGCTGTGTGACCTGGACTCTTTCACCCGGCGACTTCGACAAGC
TGCGGGAAGCCCACCGCAGAATGCTGCTGACGTGCCTCAATATGAGGTAC
ATCCAAGTCGACACCTTCGTGTATCTTGGCAGCACCATCAGCAGCGTTGG
GGACGTCAGCCCTGAGATCAAACGCCGTACTAGCTACGCCTGGAACTGCT
TCCTCAAGTACAGCAGGGCGGTGTACGACAACCCATACATCGCAGTGGCA
GACAAGGTCCGTTTCCTGAAGACGGAATTACTCGAGGTCATGCTCTACGG
CTGTGTGACCTGGACTCTTTCACCCGGCGACTTCGACAAGCTGCGGGAAG
CCCACCGCAGAATGCTGCTGACGTGCCTCAAT
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