mRNA_H-elongata_contig183386.4929.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig183386.4929.1
Unique NamemRNA_H-elongata_contig183386.4929.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig183386.4929.1 vs. uniprot
Match: D8LJL4_ECTSI (Ribonuclease Z n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJL4_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 1.190e-50
Identity = 107/166 (64.46%), Postives = 121/166 (72.89%), Query Frame = 1
Query:    1 QEYGNIDPTVRGGYDFLDASLMQAGDKAPRPPPHVAAAARRALARAGILRATSVRVRHCAHAYALVLTMAAT-----------VAKAGAALT--------GGG--DTKST-------------GKGKDDWKLVYSGDCRPSDALVREGKNAAVLIHEATFDEAMQQ 396
            +EYG++DPTVRGGYDFLDASLMQAGD APRPPPH+AAAA RALARAG+LRATSVRVRHCAHAYALVLT+A+T           V  AG ++         GGG  D+++T             G GKD WKLVYSGDCRPS++LVREGK AAVLIHEATFDE  QQ
Sbjct:  724 KEYGDVDPTVRGGYDFLDASLMQAGDNAPRPPPHIAAAAARALARAGVLRATSVRVRHCAHAYALVLTVASTAXXXXXXXXRAVFSAGPSVATNAVFGGRGGGVADSRATAQEGGDGSGVPGEGAGKD-WKLVYSGDCRPSESLVREGKGAAVLIHEATFDETKQQ 888          
BLAST of mRNA_H-elongata_contig183386.4929.1 vs. uniprot
Match: A0A6H5LFG5_9PHAE (Ribonuclease Z n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LFG5_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.170e-49
Identity = 104/166 (62.65%), Postives = 115/166 (69.28%), Query Frame = 1
Query:    1 QEYGNIDPTVRGGYDFLDASLMQAGDKAPRPPPHVAAAARRALARAGILRATSVRVRHCAHAYALVLTMAATV---------------------AKAGAALTGGG--DTKSTGKGKD-----------DWKLVYSGDCRPSDALVREGKNAAVLIHEATFDEAMQQ 396
            +EYG++DPTVRGGYDFLDASLMQAGD APRPPPH+AAAA RALARAG+LRATSVRVRHCAHAYALVLT+A+T                      A  G    GGG  D+++   G D           DWKLVYSGDCRPS+ LVREGK AAVLIHEATFDE  QQ
Sbjct:  833 KEYGDVDPTVRGGYDFLDASLMQAGDNAPRPPPHIAAAAARALARAGVLRATSVRVRHCAHAYALVLTVASTXXXXXXXXXXAVFSASPSVAANAVFGGRXGGGGVADSQARQGGDDGSGVPGEGAGKDWKLVYSGDCRPSEPLVREGKGAAVLIHEATFDETKQQ 998          
BLAST of mRNA_H-elongata_contig183386.4929.1 vs. uniprot
Match: A0A7S2C1Q9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1Q9_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.800e-10
Identity = 28/37 (75.68%), Postives = 33/37 (89.19%), Query Frame = 1
Query:  286 WKLVYSGDCRPSDALVREGKNAAVLIHEATFDEAMQQ 396
            WK+VYSGDCRPSDALVR G  A VLIHEATF+++MQ+
Sbjct:    3 WKVVYSGDCRPSDALVRAGIGATVLIHEATFEDSMQE 39          
BLAST of mRNA_H-elongata_contig183386.4929.1 vs. uniprot
Match: A0A7S3AKD4_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AKD4_9EUKA)

HSP 1 Score: 67.0 bits (162), Expect = 2.320e-10
Identity = 39/84 (46.43%), Postives = 46/84 (54.76%), Query Frame = 1
Query:  139 GILRATSVRVRHCAHAYALVLTMAATVAKAGAALTGGGDTKSTGKGKDDWKLVYSGDCRPSDALVREGKNAAVLIHEATFDEAM 390
            GI  A  V V HCA A+ LVL                       + +  W+LVYSGD RP DALVREG+NA +LIHEATFD+ M
Sbjct:  192 GITHARCVPVLHCADAWGLVL-----------------------QHRSGWRLVYSGDTRPCDALVREGQNATLLIHEATFDDEM 252          
BLAST of mRNA_H-elongata_contig183386.4929.1 vs. uniprot
Match: A0A1D1XFM1_9ARAE (Ribonuclease Z n=2 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XFM1_9ARAE)

HSP 1 Score: 66.6 bits (161), Expect = 3.490e-10
Identity = 48/133 (36.09%), Postives = 66/133 (49.62%), Query Frame = 1
Query:   25 TVRGGYD---FLDASLMQAGDKAPRPPPHVAAAA------RRALARAGILRATSVRVRHCAHAYALVLTMAATVAKAGAALTGGGDTKSTGKGKDDWKLVYSGDCRPSDALVREGKNAAVLIHEATFDEAMQQ 396
            +V GG D   F+  S MQ+  K P  P   A         ++ L  AG+    S+ V HC  A+ +VLT A  +              S GK    WKLVYSGD RP  AL+   ++A VLIHEATF++ +++
Sbjct:  810 SVSGGLDNTLFVKGSRMQSCWKRPGSPVDTATLVPMLLKLKQVLHEAGLESLFSIPVVHCPQAFGIVLTAAERI-------------NSVGKTIPGWKLVYSGDTRPCQALIDASRDATVLIHEATFEDGLEE 929          
BLAST of mRNA_H-elongata_contig183386.4929.1 vs. uniprot
Match: A0A2K1JG66_PHYPA (Ribonuclease Z n=5 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JG66_PHYPA)

HSP 1 Score: 65.1 bits (157), Expect = 1.210e-9
Identity = 37/79 (46.84%), Postives = 45/79 (56.96%), Query Frame = 1
Query:  154 TSVRVRHCAHAYALVLTMAATVAKAGAALTGGGDTKSTGKGKDDWKLVYSGDCRPSDALVREGKNAAVLIHEATFDEAM 390
            TSV V HC HA+ +VL   A              T+  GK +  WK+VYSGD RP  ALV   + A VLIHEATFD++M
Sbjct:  883 TSVPVVHCPHAFGVVLESEAR-------------TQPDGKRRKGWKIVYSGDTRPCQALVDASEGATVLIHEATFDDSM 948          
BLAST of mRNA_H-elongata_contig183386.4929.1 vs. uniprot
Match: A0A7S3V661_9STRA (Ribonuclease Z n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V661_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.610e-9
Identity = 39/86 (45.35%), Postives = 46/86 (53.49%), Query Frame = 1
Query:  139 GILRATSVRVRHCAHAYALVLTMAATVAKAGAALTGGGDTKSTGKGKDDWKLVYSGDCRPSDALVREGKNAAVLIHEATFDEAMQQ 396
            GI R  SV V HC H+YA+VL                 D  S G+      LVYSGDCRPSD L  EG  A +LIHEATF+  M++
Sbjct:  630 GITRCVSVPVSHCYHSYAVVL-----------------DGTSFGR------LVYSGDCRPSDRLTEEGHGADILIHEATFENGMEE 692          
BLAST of mRNA_H-elongata_contig183386.4929.1 vs. uniprot
Match: C1E753_MICCC (Lactamase_B domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E753_MICCC)

HSP 1 Score: 63.9 bits (154), Expect = 2.450e-9
Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  118 RRALARAGILRATSVRVRHCAHAYALVLTMAATVAKAGAALTGGGDTKSTGKGKDDWKLVYSGDCRPSDALVREGKNAAVLIHEATFDEAMQQ 396
            R A A  G+ R  S  V HCAHA+AL +   AT A+             TG+G   WKLVYSGD RP   +    + A VL+HEATF++ M++
Sbjct:  191 RDACAALGLRRMVSTPVVHCAHAFALTMESEATCAE-------------TGEG---WKLVYSGDTRPCSNVTNAARGATVLVHEATFEDGMEE 267          
BLAST of mRNA_H-elongata_contig183386.4929.1 vs. uniprot
Match: A0A830BCA8_9LAMI (Ribonuclease Z n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830BCA8_9LAMI)

HSP 1 Score: 63.5 bits (153), Expect = 3.940e-9
Identity = 37/91 (40.66%), Postives = 48/91 (52.75%), Query Frame = 1
Query:  118 RRALARAGILRATSVRVRHCAHAYALVLTMAATVAKAGAALTGGGDTKSTGKGKDDWKLVYSGDCRPSDALVREGKNAAVLIHEATFDEAM 390
            ++ L  AG+    SV V HC  AY +VL     V + G  + G             WKLVYSGD RP D L+R  + A VLIHEATF++ +
Sbjct:  430 KKVLVEAGLETLVSVPVEHCERAYGVVLKAVNRVNRVGKMIPG-------------WKLVYSGDTRPCDKLIRASEGATVLIHEATFEDGL 507          
BLAST of mRNA_H-elongata_contig183386.4929.1 vs. uniprot
Match: H3D125_TETNG (Zinc phosphodiesterase ELAC protein 2 n=2 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3D125_TETNG)

HSP 1 Score: 63.5 bits (153), Expect = 4.060e-9
Identity = 41/118 (34.75%), Postives = 58/118 (49.15%), Query Frame = 1
Query:   43 DFLDASLMQAGDKAPRPPPHVAAAARRALARAGILRATSVRVRHCAHAYALVLTMAATVAKAGAALTGGGDTKSTGKGKDDWKLVYSGDCRPSDALVREGKNAAVLIHEATFDEAMQQ 396
            DF+    +Q G + P P     A+ +  L R G+ +  +  V HC HA+A  LT                        +  WKL +SGD RP DALVR GK+A +LIHEAT ++ ++Q
Sbjct:  598 DFIPNRSLQDGGEPPAP--RTEASIQALLERNGLEKFQTCLVHHCKHAFACSLTH-----------------------RQGWKLAFSGDTRPCDALVRLGKDATLLIHEATLEDGLEQ 690          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183386.4929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJL4_ECTSI1.190e-5064.46Ribonuclease Z n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5LFG5_9PHAE1.170e-4962.65Ribonuclease Z n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
A0A7S2C1Q9_9STRA1.800e-1075.68Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3AKD4_9EUKA2.320e-1046.43Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A1D1XFM1_9ARAE3.490e-1036.09Ribonuclease Z n=2 Tax=Anthurium amnicola TaxID=16... [more]
A0A2K1JG66_PHYPA1.210e-946.84Ribonuclease Z n=5 Tax=Physcomitrium patens TaxID=... [more]
A0A7S3V661_9STRA1.610e-945.35Ribonuclease Z n=1 Tax=Chaetoceros debilis TaxID=1... [more]
C1E753_MICCC2.450e-941.94Lactamase_B domain-containing protein n=1 Tax=Micr... [more]
A0A830BCA8_9LAMI3.940e-940.66Ribonuclease Z n=1 Tax=Phtheirospermum japonicum T... [more]
H3D125_TETNG4.060e-934.75Zinc phosphodiesterase ELAC protein 2 n=2 Tax=Tetr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183386contigH-elongata_contig183386:573..968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.0
Seed ortholog evalue1.1e-44
Seed eggNOG ortholog2880.D8LJL4
KEGG koko:K00784
KEGG Pathwayko03013,map03013
EggNOG free text desc.3'-tRNA processing endoribonuclease activity
EggNOG OGsCOG1234@1,KOG2121@2759
EC3.1.26.11
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930053.0673864-CDS-H-elongata_contig183386:572..9681622930053.0673864-CDS-H-elongata_contig183386:572..968Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183386 573..968 -
1691679262.4586687-CDS-H-elongata_contig183386:572..9681691679262.4586687-CDS-H-elongata_contig183386:572..968Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183386 573..968 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183386.4929.1prot_H-elongata_contig183386.4929.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig183386 573..968 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig183386.4929.1

>prot_H-elongata_contig183386.4929.1 ID=prot_H-elongata_contig183386.4929.1|Name=mRNA_H-elongata_contig183386.4929.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
QEYGNIDPTVRGGYDFLDASLMQAGDKAPRPPPHVAAAARRALARAGILR
ATSVRVRHCAHAYALVLTMAATVAKAGAALTGGGDTKSTGKGKDDWKLVY
SGDCRPSDALVREGKNAAVLIHEATFDEAMQQ
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mRNA from alignment at H-elongata_contig183386:573..968-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig183386.4929.1 ID=mRNA_H-elongata_contig183386.4929.1|Name=mRNA_H-elongata_contig183386.4929.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=396bp|location=Sequence derived from alignment at H-elongata_contig183386:573..968- (Himanthalia elongata Himel1 dioecious)
CAGGAATACGGCAACATCGACCCGACGGTGCGTGGAGGCTACGACTTTCT AGACGCCAGCCTCATGCAGGCTGGCGACAAGGCGCCGCGCCCGCCTCCTC ACGTGGCCGCGGCGGCCCGGCGAGCCCTGGCGAGGGCAGGCATCCTCCGC GCCACGAGCGTACGCGTCCGGCACTGCGCGCACGCCTACGCCCTGGTGCT CACCATGGCCGCCACAGTGGCGAAAGCGGGGGCGGCGTTAACCGGCGGAG GAGATACGAAAAGCACCGGGAAAGGGAAGGATGATTGGAAGCTGGTGTAC AGCGGGGACTGTCGTCCAAGCGACGCCTTGGTGAGGGAGGGCAAGAACGC CGCGGTTCTCATCCACGAGGCGACGTTTGATGAGGCCATGCAGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig183386:573..968-

>mRNA_H-elongata_contig183386.4929.1 ID=mRNA_H-elongata_contig183386.4929.1|Name=mRNA_H-elongata_contig183386.4929.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig183386:573..968- (Himanthalia elongata Himel1 dioecious)
CAGGAATACGGCAACATCGACCCGACGGTGCGTGGAGGCTACGACTTTCT
AGACGCCAGCCTCATGCAGGCTGGCGACAAGGCGCCGCGCCCGCCTCCTC
ACGTGGCCGCGGCGGCCCGGCGAGCCCTGGCGAGGGCAGGCATCCTCCGC
GCCACGAGCGTACGCGTCCGGCACTGCGCGCACGCCTACGCCCTGGTGCT
CACCATGGCCGCCACAGTGGCGAAAGCGGGGGCGGCGTTAACCGGCGGAG
GAGATACGAAAAGCACCGGGAAAGGGAAGGATGATTGGAAGCTGGTGTAC
AGCGGGGACTGTCGTCCAAGCGACGCCTTGGTGAGGGAGGGCAAGAACGC
CGCGGTTCTCATCCACGAGGCGACGTTTGATGAGGCCATGCAGCAGCAGG
AATACGGCAACATCGACCCGACGGTGCGTGGAGGCTACGACTTTCTAGAC
GCCAGCCTCATGCAGGCTGGCGACAAGGCGCCGCGCCCGCCTCCTCACGT
GGCCGCGGCGGCCCGGCGAGCCCTGGCGAGGGCAGGCATCCTCCGCGCCA
CGAGCGTACGCGTCCGGCACTGCGCGCACGCCTACGCCCTGGTGCTCACC
ATGGCCGCCACAGTGGCGAAAGCGGGGGCGGCGTTAACCGGCGGAGGAGA
TACGAAAAGCACCGGGAAAGGGAAGGATGATTGGAAGCTGGTGTACAGCG
GGGACTGTCGTCCAAGCGACGCCTTGGTGAGGGAGGGCAAGAACGCCGCG
GTTCTCATCCACGAGGCGACGTTTGATGAGGCCATGCAGCAG
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