mRNA_H-elongata_contig183377.4928.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig183377.4928.1
Unique NamemRNA_H-elongata_contig183377.4928.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig183377.4928.1 vs. uniprot
Match: D7FP37_ECTSI (DOMON domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP37_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 8.850e-13
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    1 ETIRVAVHAKTASGWAGIGISEMGGMEGADIVYYE 105
            ETIRVAVHAK ASGWAG+GISEMGGMEGADIVYYE
Sbjct:   63 ETIRVAVHAKAASGWAGVGISEMGGMEGADIVYYE 97
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BLAST of mRNA_H-elongata_contig183377.4928.1 vs. uniprot
Match: D7FSK3_ECTSI (DOMON domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK3_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 1.690e-12
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 ETIRVAVHAKTASGWAGIGISEMGGMEGADIVYYE 105
            E IRVAVHAK A+GWAG+GISEMGGMEGADIV+YE
Sbjct:   64 EAIRVAVHAKAATGWAGVGISEMGGMEGADIVFYE 98
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BLAST of mRNA_H-elongata_contig183377.4928.1 vs. uniprot
Match: D7G216_ECTSI (DOMON domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G216_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 8.550e-12
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    1 ETIRVAVHAKTASGWAGIGISEMGGMEGADIVYYE 105
            ETIRVAVHAK A+GWAG+GISEMGGMEGADIV+YE
Sbjct:   51 ETIRVAVHAKAATGWAGVGISEMGGMEGADIVFYE 85
[Close]
BLAST of mRNA_H-elongata_contig183377.4928.1 vs. uniprot
Match: D7FP38_ECTSI (DOMON domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP38_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.600e-11
Identity = 30/35 (85.71%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    1 ETIRVAVHAKTASGWAGIGISEMGGMEGADIVYYE 105
            +TIR+AVHAK A+GWAG+GISEMGGMEGADIVYYE
Sbjct:   63 DTIRLAVHAKAATGWAGVGISEMGGMEGADIVYYE 97
[Close]
BLAST of mRNA_H-elongata_contig183377.4928.1 vs. uniprot
Match: D8LD47_ECTSI (DOMON domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD47_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 7.620e-11
Identity = 29/34 (85.29%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    4 TIRVAVHAKTASGWAGIGISEMGGMEGADIVYYE 105
            TI+VAVHAK A+GWAG+G+SEMGGMEGADIVYYE
Sbjct:   63 TIKVAVHAKAATGWAGLGVSEMGGMEGADIVYYE 96
[Close]
BLAST of mRNA_H-elongata_contig183377.4928.1 vs. uniprot
Match: A0A6H5K5H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H3_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.600e-9
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    4 TIRVAVHAKTASGWAGIGISEMGGMEGADIVYYEAMV 114
            TI+  VHAK A+GWAG+G+SEMGGMEG DIVYYE  V
Sbjct:   63 TIKAIVHAKAATGWAGLGVSEMGGMEGGDIVYYETGV 99
[Close]
BLAST of mRNA_H-elongata_contig183377.4928.1 vs. uniprot
Match: D7G337_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G337_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.130e-8
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 1 
Query:    1 ETIRVAVHAKTASGWAGIGISEMGGMEGADI 93
            E+IRVAVHAK A+GWAG+GISEMGGMEGADI
Sbjct:   51 ESIRVAVHAKAATGWAGVGISEMGGMEGADI 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183377.4928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FP37_ECTSI8.850e-1394.29DOMON domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FSK3_ECTSI1.690e-1285.71DOMON domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G216_ECTSI8.550e-1288.57DOMON domain-containing protein n=2 Tax=Ectocarpus... [more]
D7FP38_ECTSI1.600e-1185.71DOMON domain-containing protein n=2 Tax=Ectocarpus... [more]
D8LD47_ECTSI7.620e-1185.29DOMON domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K5H3_9PHAE1.600e-972.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G337_ECTSI1.130e-887.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183377contigH-elongata_contig183377:1131..1244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue2.5e-10
Seed eggNOG ortholog2880.D7FP37
EggNOG free text desc.octopamine biosynthetic process
EggNOG OGsKOG3568@1,KOG3568@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930053.019152-CDS-H-elongata_contig183377:1130..12441622930053.019152-CDS-H-elongata_contig183377:1130..1244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183377 1131..1244 -
1691679262.4329464-CDS-H-elongata_contig183377:1130..12441691679262.4329464-CDS-H-elongata_contig183377:1130..1244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183377 1131..1244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183377.4928.1prot_H-elongata_contig183377.4928.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig183377 1131..1244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig183377.4928.1

>prot_H-elongata_contig183377.4928.1 ID=prot_H-elongata_contig183377.4928.1|Name=mRNA_H-elongata_contig183377.4928.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
ETIRVAVHAKTASGWAGIGISEMGGMEGADIVYYEAMV
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mRNA from alignment at H-elongata_contig183377:1131..1244-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig183377.4928.1 ID=mRNA_H-elongata_contig183377.4928.1|Name=mRNA_H-elongata_contig183377.4928.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig183377:1131..1244- (Himanthalia elongata Himel1 dioecious)
GAGACCATCCGCGTCGCCGTTCATGCAAAGACAGCTTCCGGCTGGGCTGG
AATTGGAATTTCTGAGATGGGAGGCATGGAGGGAGCCGACATCGTGTACT
ACGAAGCAATGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig183377:1131..1244-

>mRNA_H-elongata_contig183377.4928.1 ID=mRNA_H-elongata_contig183377.4928.1|Name=mRNA_H-elongata_contig183377.4928.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig183377:1131..1244- (Himanthalia elongata Himel1 dioecious)
GAGACCATCCGCGTCGCCGTTCATGCAAAGACAGCTTCCGGCTGGGCTGG
AATTGGAATTTCTGAGATGGGAGGCATGGAGGGAGCCGACATCGTGTACT
ACGAAGCAATGGTAGAGACCATCCGCGTCGCCGTTCATGCAAAGACAGCT
TCCGGCTGGGCTGGAATTGGAATTTCTGAGATGGGAGGCATGGAGGGAGC
CGACATCGTGTACTACGAAGCAATGGTA
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