mRNA_H-elongata_contig18328.4925.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18328.4925.1 vs. uniprot
Match: D8LTT7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT7_ECTSI) HSP 1 Score: 212 bits (540), Expect = 2.640e-60 Identity = 96/130 (73.85%), Postives = 115/130 (88.46%), Query Frame = 1
Query: 4 DLQPTKFLWEPYEPRNFYYETVECGRRCLLTGALVFVLPNTAGQMAGACIFAFLTLLAFELMRPHLSQTDAWMYRVGCIVIFFSNFLGLMAKADVSGEDAQSQELFGVLLVCVHAVLIMTIILEGYLAMK 393
DLQ T+FLWEPYEP N+YYETVECGRRCLLTGALVFVLPNTAGQ AGA +FAF+ LL FEL+RPHLS TDAWMYR+GCI IFFSNFLGLMAKADVS E+AQSQE +G+LL+ VH ++++ I+ + Y++M+
Sbjct: 1540 DLQSTRFLWEPYEPDNYYYETVECGRRCLLTGALVFVLPNTAGQAAGASVFAFVGLLGFELLRPHLSHTDAWMYRIGCITIFFSNFLGLMAKADVSDEEAQSQEAYGLLLIAVHVLMVLAILAQAYVSMQ 1669
BLAST of mRNA_H-elongata_contig18328.4925.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI) HSP 1 Score: 152 bits (383), Expect = 3.290e-39 Identity = 66/135 (48.89%), Postives = 100/135 (74.07%), Query Frame = 1
Query: 4 DLQPTKFLWEPYEPRNFYYETVECGRRCLLTGALVFVLPNTAGQMAGACIFAFLTLLAFELMRPHLSQTDAWMYRVGCIVIFFSNFLGLMAKADVSGEDAQSQELFGVLLVCVHAVLIMTIILEGYLAMKLQLHE 408
DL P+ FLW+ + P +YYE VECGRR LLTG L+F+ PNTA Q+A AC+FAF++LL FEL+RPHL D+W+YR+GC+ IF SNFL L+ K D +G+ ++++FG +++ ++ +LIM ++L + +M+ + E
Sbjct: 1325 DLVPSMFLWKDFGPDMYYYEVVECGRRILLTGVLIFISPNTAAQVAAACMFAFVSLLGFELLRPHLDPVDSWLYRLGCMCIFLSNFLALLIKVDSAGDS--NRDVFGWIMIVINLLLIMAVLLASWFSMQQTMDE 1457
BLAST of mRNA_H-elongata_contig18328.4925.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI) HSP 1 Score: 150 bits (379), Expect = 1.140e-38 Identity = 69/135 (51.11%), Postives = 98/135 (72.59%), Query Frame = 1
Query: 4 DLQPTKFLWEPYEPRNFYYETVECGRRCLLTGALVFVLPNTAGQMAGACIFAFLTLLAFELMRPHLSQTDAWMYRVGCIVIFFSNFLGLMAKADVSGEDAQSQELFGVLLVCVHAVLIMTIILEGYLAMKLQLHE 408
DL P+ FLW+ + P +YYE VECGRR LLTG LVF+ PNTA Q+A AC+FAF++LL FEL+RPHL D+W+YR+GC+ IF SNFL L+ K D SG D + ++FG +++ ++ LIM ++L + +M+ + E
Sbjct: 1335 DLIPSMFLWKDFGPEIYYYEVVECGRRILLTGVLVFISPNTAAQVAAACMFAFVSLLGFELLRPHLDPVDSWLYRLGCLCIFLSNFLALLIKVD-SGVDG-NHDVFGAIMIGINMFLIMAVLLASWFSMQQTMDE 1467
BLAST of mRNA_H-elongata_contig18328.4925.1 vs. uniprot
Match: A0A6H5JCK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK8_9PHAE) HSP 1 Score: 147 bits (372), Expect = 9.610e-38 Identity = 66/154 (42.86%), Postives = 103/154 (66.88%), Query Frame = 1
Query: 4 DLQPTKFLWEPYEPRNFYYETVECGRRCLLTGALVFVLPNTAGQMAGACIFAFLTLLAFELMRPHLSQTDAWMYRVGCIVIFFSNFLGLMAKADVSGEDAQSQELFGVLLVCVHAVLIMTIILEGYLAMKLQLHEESTSNDHIDVVPGPMTNKE 465
DL P+ FLW+ ++P +YYE +ECGRR LLTGAL+F+ P+TA Q A AC+FAF +LL FEL+RPHL D+W+YR+GC+ IF SNFL L+ K D +GE +S + G +L+ V+ +L++ ++ + A + + + + V +T+++
Sbjct: 869 DLVPSMFLWKDFDPDMYYYEVIECGRRILLTGALIFIAPHTAAQAAMACMFAFASLLGFELLRPHLDPADSWLYRLGCVTIFLSNFLALLTKVDAAGESNRS--ILGGILIAVNVLLVVAVLASTWFATQQTVDDNREGENAFAVAKVMLTHEQ 1020
BLAST of mRNA_H-elongata_contig18328.4925.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI) HSP 1 Score: 147 bits (371), Expect = 1.350e-37 Identity = 68/142 (47.89%), Postives = 101/142 (71.13%), Query Frame = 1
Query: 4 DLQPTKFLWEPYEPRNFYYETVECGRRCLLTGALVFVLPNTAGQMAGACIFAFLTLLAFELMRPHLSQTDAWMYRVGCIVIFFSNFLGLMAKADVSGEDAQSQELFGVLLVCVHAVLIMTIILEGYLAMKLQLHEESTSNDH 429
DL P+ FLW+ + P +YYE +ECGRR LLTGAL+F+ P+T Q A AC+FAF +LL FEL+RPHL D+W+YR+GC+VIF SNFL L+ KAD +GE ++S + G ++V ++ LI+ ++ + A + Q ++S N++
Sbjct: 1415 DLVPSMFLWKDFGPDMYYYEVIECGRRILLTGALIFIAPHTVAQAAIACMFAFASLLGFELLRPHLDPADSWLYRLGCVVIFLSNFLALLIKADTAGEGSRS--VLGGIMVAINIFLILAVLFSTWFATQ-QSVDDSRDNEN 1553
BLAST of mRNA_H-elongata_contig18328.4925.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI) HSP 1 Score: 145 bits (366), Expect = 6.420e-37 Identity = 70/162 (43.21%), Postives = 100/162 (61.73%), Query Frame = 1
Query: 7 LQPTKFLWEPYEPRNFYYETVECGRRCLLTGALVFVLPNTAGQMAGACIFAFLTLLAFELMRPHLSQTDAWMYRVGCIVIFFSNFLGLMAKADVSGEDAQSQELFGVLLVCVHAVLIMTIILEGYLAMK----------LQLHEESTSNDHIDVVPGPMTNK 462
+ PT FLW Y P +YYE EC RR LLTG LVF++P+T GQ+A C+FAFL+LLAFEL+RPH D +YR GC+VIFF+NFL LM KA+V+ D++ E++ V+L+ V+ + ++I + A K + L + + +D + GP K
Sbjct: 1528 IAPTSFLWNAYYPNRYYYEVFECMRRLLLTGLLVFLVPDTPGQVAFGCVFAFLSLLAFELLRPHTDHLDMQLYRTGCLVIFFTNFLALMIKANVASPDSRGSEVYSVVLIIVNVLFFLSIFWNTWAAAKASFSRRHVQDMMLGVDIVNEKQLDKIIGPKNTK 1689
BLAST of mRNA_H-elongata_contig18328.4925.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE) HSP 1 Score: 144 bits (363), Expect = 1.630e-36 Identity = 67/145 (46.21%), Postives = 93/145 (64.14%), Query Frame = 1
Query: 7 LQPTKFLWEPYEPRNFYYETVECGRRCLLTGALVFVLPNTAGQMAGACIFAFLTLLAFELMRPHLSQTDAWMYRVGCIVIFFSNFLGLMAKADVSGEDAQSQELFGVLLVCVHAVLIMTIILEGYLAMKLQLHEESTSNDHIDVV 441
+ PT FLW Y P +YYE EC RR LLTG LVFV+P+T GQ+A C+FAFL+LLAFEL+RPH D +YR GC+VIFF+NFL LM KA+V+ D++ ++ V+L+ V+ + ++I + A K +D+V
Sbjct: 1734 IAPTSFLWNAYYPNRYYYEVFECMRRLLLTGLLVFVVPDTPGQVAFGCVFAFLSLLAFELLRPHTDHLDMQLYRTGCLVIFFTNFLALMIKANVANPDSRGSAVYSVVLIIVNVLFFLSIFWNTWAAAKASFSRRHDMMLGVDIV 1878
BLAST of mRNA_H-elongata_contig18328.4925.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE) HSP 1 Score: 141 bits (356), Expect = 1.400e-35 Identity = 65/151 (43.05%), Postives = 96/151 (63.58%), Query Frame = 1
Query: 4 DLQPTKFLWEPYEPRNFYYETVECGRRCLLTGALVFVLPNTAGQMAGACIFAFLTLLAFELMRPHLSQTDAWMYRVGCIVIFFSNFLGLMAKADVSGEDAQSQELFGVLLVCVHAVLIMTIILEGYLAMKLQLHEESTSNDHIDVVPGPMT 456
DL P+ FLW+ + P +YYE +ECGRR LLTG L+F TA Q A ACIFAF++LL FEL+RPHL DAW+YR+GC++IF SNFL L+ K D +GE ++ G +L+ V+ LI+ ++ + A + + + + + + +T
Sbjct: 1364 DLVPSMFLWKDFGPDMYYYEVIECGRRILLTGVLIFFAAGTAAQAAMACIFAFVSLLGFELLRPHLDPADAWLYRLGCVIIFLSNFLALLIKVDAAGEGNRAA--LGGILIAVNVFLILAVLSTSWFATQQMVDDNRNEENSLALAKTMLT 1512
BLAST of mRNA_H-elongata_contig18328.4925.1 vs. uniprot
Match: D7FRH1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH1_ECTSI) HSP 1 Score: 139 bits (351), Expect = 6.420e-35 Identity = 64/151 (42.38%), Postives = 95/151 (62.91%), Query Frame = 1
Query: 4 DLQPTKFLWEPYEPRNFYYETVECGRRCLLTGALVFVLPNTAGQMAGACIFAFLTLLAFELMRPHLSQTDAWMYRVGCIVIFFSNFLGLMAKADVSGEDAQSQELFGVLLVCVHAVLIMTIILEGYLAMKLQLHEESTSNDHIDVVPGPMT 456
DL P+ FLW+ + P +YYE +ECGRR LLTG L+F TA Q A ACIFAF++LL FEL+RPHL D W+YR+GC++IF SNFL L+ K D +GE ++ G +L+ V+ LI+ ++ + A + + + + + + +T
Sbjct: 1022 DLVPSMFLWKDFGPDMYYYEVIECGRRILLTGVLIFFAAGTAAQAAMACIFAFVSLLGFELLRPHLDPADMWLYRLGCVIIFLSNFLALLIKVDAAGEGNRAA--LGGILIAVNVFLILAVLSTSWFATQQMVDDNRNEENSLALAKTMLT 1170
BLAST of mRNA_H-elongata_contig18328.4925.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE) HSP 1 Score: 132 bits (333), Expect = 1.790e-33 Identity = 59/130 (45.38%), Postives = 88/130 (67.69%), Query Frame = 1
Query: 4 DLQPTKFLWEPYEPRNFYYETVECGRRCLLTGALVFVLPNTAGQMAGACIFAFLTLLAFELMRPHLSQTDAWMYRVGCIVIFFSNFLGLMAKADVSGEDAQSQELFGVLLVCVHAVLIMTIILEGYLAMK 393
+L+P K LWEPY+PR ++YE VECGRR +LTG VF+ P TA Q+A FA L+ FE++ P + DAW+YR G +V+FFS +L L+ K D S E+++SQ++F +LV H +++ ++L L+ K
Sbjct: 234 NLRPMKDLWEPYKPRRYFYELVECGRRIVLTGLAVFLFPGTAAQVAIEVAFAAGLLVVFEVLAPFVDPMDAWLYRSGALVVFFSMYLALLLKVDASDENSESQQVFAAVLVAAHVSMVLAVLLSSLLSAK 363 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18328.4925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18328.4925.1 >prot_H-elongata_contig18328.4925.1 ID=prot_H-elongata_contig18328.4925.1|Name=mRNA_H-elongata_contig18328.4925.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=185bp LDLQPTKFLWEPYEPRNFYYETVECGRRCLLTGALVFVLPNTAGQMAGACback to top mRNA from alignment at H-elongata_contig18328:3129..5186- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18328.4925.1 ID=mRNA_H-elongata_contig18328.4925.1|Name=mRNA_H-elongata_contig18328.4925.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2058bp|location=Sequence derived from alignment at H-elongata_contig18328:3129..5186- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18328:3129..5186- >mRNA_H-elongata_contig18328.4925.1 ID=mRNA_H-elongata_contig18328.4925.1|Name=mRNA_H-elongata_contig18328.4925.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1110bp|location=Sequence derived from alignment at H-elongata_contig18328:3129..5186- (Himanthalia elongata Himel1 dioecious)back to top |