mRNA_H-elongata_contig183154.4923.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig183154.4923.1
Unique NamemRNA_H-elongata_contig183154.4923.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig183154.4923.1 vs. uniprot
Match: D7FZ01_ECTSI (Diacylglycerol kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ01_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 2.390e-11
Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 QVLICGGDGTMGWILSCIDRLGPAA-----AAGTPKFPVAIMPLGTGGEILR 141
            +VLICGGDGTMGWILSCIDRL  AA      +    FPVA+MPLGTG ++ R
Sbjct:  114 KVLICGGDGTMGWILSCIDRLRMAAEPSPSVSQEENFPVAMMPLGTGNDLAR 165
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BLAST of mRNA_H-elongata_contig183154.4923.1 vs. uniprot
Match: A0A6H5K6M6_9PHAE (Diacylglycerol kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M6_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 3.270e-11
Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 QVLICGGDGTMGWILSCIDRLGPAAAAGTP-----KFPVAIMPLGTGGEILR 141
            +VLICGGDGTMGWILSCIDRL  AA           FPVA+MPLGTG ++ R
Sbjct:   97 KVLICGGDGTMGWILSCIDRLRMAAEPSPSGPQEENFPVAMMPLGTGNDLAR 148
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BLAST of mRNA_H-elongata_contig183154.4923.1 vs. uniprot
Match: A0A183N3H2_9TREM (Diacylglycerol kinase n=2 Tax=Schistosoma margrebowiei TaxID=48269 RepID=A0A183N3H2_9TREM)

HSP 1 Score: 64.7 bits (156), Expect = 6.950e-11
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 QVLICGGDGTMGWILSCIDRLGPAAAAGTPKFPVAIMPLGTGGEILRV 144
            ++L+CGGDGT+GW LSC+D +G  AA  TP  P+AI+PLGTG ++ RV
Sbjct:   33 KILVCGGDGTVGWALSCLDNVGQDAACPTP--PMAILPLGTGNDLARV 78
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BLAST of mRNA_H-elongata_contig183154.4923.1 vs. uniprot
Match: A0A183W2K2_TRIRE (Diacylglycerol kinase (ATP) n=1 Tax=Trichobilharzia regenti TaxID=157069 RepID=A0A183W2K2_TRIRE)

HSP 1 Score: 64.7 bits (156), Expect = 7.460e-11
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 QVLICGGDGTMGWILSCIDRLGPAAAAGTPKFPVAIMPLGTGGEILRV 144
            ++L+CGGDGT+GW LSC+D +G  AA  TP  P+AI+PLGTG ++ RV
Sbjct:  137 KILVCGGDGTVGWALSCLDNVGQDAACPTP--PMAILPLGTGNDLARV 182
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BLAST of mRNA_H-elongata_contig183154.4923.1 vs. uniprot
Match: A0A4V3SHB4_OPIFE (DAGKc domain-containing protein (Fragment) n=1 Tax=Opisthorchis felineus TaxID=147828 RepID=A0A4V3SHB4_OPIFE)

HSP 1 Score: 63.9 bits (154), Expect = 7.750e-11
Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 QVLICGGDGTMGWILSCIDRLGPAAAAGTPKFPVAIMPLGTGGEILRV 144
            ++L+CGGDGT+GW LSC+D +G  AA  TP  P+AI+P+GTG ++ RV
Sbjct:  181 KILVCGGDGTVGWALSCLDNVGQDAACPTP--PMAILPIGTGNDLARV 226
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BLAST of mRNA_H-elongata_contig183154.4923.1 vs. uniprot
Match: A0A2H1CSF4_FASHE (Diacylglycerol kinase (ATP) n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A2H1CSF4_FASHE)

HSP 1 Score: 64.7 bits (156), Expect = 7.870e-11
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 QVLICGGDGTMGWILSCIDRLGPAAAAGTPKFPVAIMPLGTGGEILRV 144
            ++L+CGGDGT+GW LSC+D +G  AA  TP  P+AI+PLGTG ++ RV
Sbjct:  219 KILVCGGDGTVGWALSCLDNVGQDAACPTP--PMAILPLGTGNDLARV 264
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BLAST of mRNA_H-elongata_contig183154.4923.1 vs. uniprot
Match: A0A183JHU3_9TREM (Diacylglycerol kinase n=1 Tax=Schistosoma curassoni TaxID=6186 RepID=A0A183JHU3_9TREM)

HSP 1 Score: 64.7 bits (156), Expect = 8.080e-11
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 QVLICGGDGTMGWILSCIDRLGPAAAAGTPKFPVAIMPLGTGGEILRV 144
            ++L+CGGDGT+GW LSC+D +G  AA  TP  P+AI+PLGTG ++ RV
Sbjct:  107 KILVCGGDGTVGWALSCLDNVGQDAACPTP--PMAILPLGTGNDLARV 152
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BLAST of mRNA_H-elongata_contig183154.4923.1 vs. uniprot
Match: A0A183AQU7_9TREM (Diacylglycerol kinase n=1 Tax=Echinostoma caproni TaxID=27848 RepID=A0A183AQU7_9TREM)

HSP 1 Score: 64.7 bits (156), Expect = 8.340e-11
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 QVLICGGDGTMGWILSCIDRLGPAAAAGTPKFPVAIMPLGTGGEILRV 144
            ++L+CGGDGT+GW LSC+D +G  AA  TP  P+AI+PLGTG ++ RV
Sbjct:  209 KILVCGGDGTVGWALSCLDNVGQDAACPTP--PMAILPLGTGNDLARV 254
[Close]
BLAST of mRNA_H-elongata_contig183154.4923.1 vs. uniprot
Match: A0A094ZP33_SCHHA (Diacylglycerol kinase n=1 Tax=Schistosoma haematobium TaxID=6185 RepID=A0A094ZP33_SCHHA)

HSP 1 Score: 64.7 bits (156), Expect = 8.350e-11
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 QVLICGGDGTMGWILSCIDRLGPAAAAGTPKFPVAIMPLGTGGEILRV 144
            ++L+CGGDGT+GW LSC+D +G  AA  TP  P+AI+PLGTG ++ RV
Sbjct:  503 KILVCGGDGTVGWALSCLDNVGQDAACPTP--PMAILPLGTGNDLARV 548
[Close]
BLAST of mRNA_H-elongata_contig183154.4923.1 vs. uniprot
Match: A0A8E0RN78_9TREM (Diacylglycerol kinase n=1 Tax=Fasciolopsis buski TaxID=27845 RepID=A0A8E0RN78_9TREM)

HSP 1 Score: 64.7 bits (156), Expect = 8.370e-11
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 QVLICGGDGTMGWILSCIDRLGPAAAAGTPKFPVAIMPLGTGGEILRV 144
            ++L+CGGDGT+GW LSC+D +G  AA  TP  P+AI+PLGTG ++ RV
Sbjct:  682 KILVCGGDGTVGWALSCLDNVGQDAACPTP--PMAILPLGTGNDLARV 727
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183154.4923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ01_ECTSI2.390e-1163.46Diacylglycerol kinase n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5K6M6_9PHAE3.270e-1163.46Diacylglycerol kinase n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A183N3H2_9TREM6.950e-1158.33Diacylglycerol kinase n=2 Tax=Schistosoma margrebo... [more]
A0A183W2K2_TRIRE7.460e-1158.33Diacylglycerol kinase (ATP) n=1 Tax=Trichobilharzi... [more]
A0A4V3SHB4_OPIFE7.750e-1156.25DAGKc domain-containing protein (Fragment) n=1 Tax... [more]
A0A2H1CSF4_FASHE7.870e-1158.33Diacylglycerol kinase (ATP) n=1 Tax=Fasciola hepat... [more]
A0A183JHU3_9TREM8.080e-1158.33Diacylglycerol kinase n=1 Tax=Schistosoma curasson... [more]
A0A183AQU7_9TREM8.340e-1158.33Diacylglycerol kinase n=1 Tax=Echinostoma caproni ... [more]
A0A094ZP33_SCHHA8.350e-1158.33Diacylglycerol kinase n=1 Tax=Schistosoma haematob... [more]
A0A8E0RN78_9TREM8.370e-1158.33Diacylglycerol kinase n=1 Tax=Fasciolopsis buski T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183154contigH-elongata_contig183154:999..1160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptiondiacylglycerol kinase
Ec32 orthologEc-06_002120.1
Exons1
Model size162
Cds size132
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930052.6146274-CDS-H-elongata_contig183154:998..11301622930052.6146274-CDS-H-elongata_contig183154:998..1130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183154 999..1130 -
1691679262.2426267-CDS-H-elongata_contig183154:998..11301691679262.2426267-CDS-H-elongata_contig183154:998..1130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183154 999..1130 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930052.6307385-UTR-H-elongata_contig183154:1130..11601622930052.6307385-UTR-H-elongata_contig183154:1130..1160Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig183154 1131..1160 -
1691679262.2532048-UTR-H-elongata_contig183154:1130..11601691679262.2532048-UTR-H-elongata_contig183154:1130..1160Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig183154 1131..1160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183154.4923.1prot_H-elongata_contig183154.4923.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig183154 999..1130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig183154.4923.1

>prot_H-elongata_contig183154.4923.1 ID=prot_H-elongata_contig183154.4923.1|Name=mRNA_H-elongata_contig183154.4923.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
MGWILSCIDRLGPAAAAGTPKFPVAIMPLGTGGEILRVSSMTK*
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mRNA from alignment at H-elongata_contig183154:999..1160-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig183154.4923.1 ID=mRNA_H-elongata_contig183154.4923.1|Name=mRNA_H-elongata_contig183154.4923.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig183154:999..1160- (Himanthalia elongata Himel1 dioecious)
CAGGTACTAATCTGTGGGGGAGACGGAACCATGGGGTGGATTCTCTCGTG
TATCGATCGATTGGGCCCCGCAGCAGCAGCCGGCACGCCGAAGTTTCCCG
TGGCCATTATGCCGCTGGGCACAGGTGGGGAAATACTAAGAGTATCAAGT
ATGACTAAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig183154:999..1160-

>mRNA_H-elongata_contig183154.4923.1 ID=mRNA_H-elongata_contig183154.4923.1|Name=mRNA_H-elongata_contig183154.4923.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig183154:999..1160- (Himanthalia elongata Himel1 dioecious)
ATGGGGTGGATTCTCTCGTGTATCGATCGATTGGGCCCCGCAGCAGCAGC
CGGCACGCCGAAGTTTCCCGTGGCCATTATGCCGCTGGGCACAGGTGGGG
AAATACTAAGAGTATCAAGTATGACTAAATAAATGGGGTGGATTCTCTCG
TGTATCGATCGATTGGGCCCCGCAGCAGCAGCCGGCACGCCGAAGTTTCC
CGTGGCCATTATGCCGCTGGGCACAGGTGGGGAAATACTAAGAGTATCAA
GTATGACTAAATAA
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