mRNA_H-elongata_contig183152.4922.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig183152.4922.1
Unique NamemRNA_H-elongata_contig183152.4922.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183152.4922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183152contigH-elongata_contig183152:617..939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size266
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930052.5613368-CDS-H-elongata_contig183152:618..8241622930052.5613368-CDS-H-elongata_contig183152:618..824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183152 619..824 -
1691679262.2128522-CDS-H-elongata_contig183152:618..8241691679262.2128522-CDS-H-elongata_contig183152:618..824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183152 619..824 -
1622930052.5722299-CDS-H-elongata_contig183152:881..9391622930052.5722299-CDS-H-elongata_contig183152:881..939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183152 882..939 -
1691679262.2313864-CDS-H-elongata_contig183152:881..9391691679262.2313864-CDS-H-elongata_contig183152:881..939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183152 882..939 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183152.4922.1prot_H-elongata_contig183152.4922.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig183152 619..939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig183152.4922.1

>prot_H-elongata_contig183152.4922.1 ID=prot_H-elongata_contig183152.4922.1|Name=mRNA_H-elongata_contig183152.4922.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
RISLENQRGFGDIWPKMYVRSTSLFLFPPEACSPPRSRNTELLYASFIDI
FPFVPARLQERVSLTILSPLPFSPNPPISAAFTSASFG
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mRNA from alignment at H-elongata_contig183152:617..939-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig183152.4922.1 ID=mRNA_H-elongata_contig183152.4922.1|Name=mRNA_H-elongata_contig183152.4922.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=323bp|location=Sequence derived from alignment at H-elongata_contig183152:617..939- (Himanthalia elongata Himel1 dioecious)
CGCATATCACTTGAAAACCAGCGTGGCTTTGGAGATATCTGGCCGAAAAT
GTATGTTCGTAATACTTCTTTTTCCAAGTCGAGATTATTCGACGTGCAGA
GAACTATAGGGATAGGGAGTACTTCCCTGTTCCTGTTTCCTCCGGAAGCG
TGTTCTCCTCCAAGGTCACGTAATACCGAGCTCCTATATGCCTCTTTCAT
TGATATATTTCCTTTCGTTCCAGCCAGACTACAAGAACGCGTGTCGTTGA
CGATTCTTTCCCCTCTTCCCTTCTCTCCTAACCCACCCATTTCCGCCGCC
TTCACCTCCGCGTCTTTTGGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig183152:617..939-

>mRNA_H-elongata_contig183152.4922.1 ID=mRNA_H-elongata_contig183152.4922.1|Name=mRNA_H-elongata_contig183152.4922.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig183152:617..939- (Himanthalia elongata Himel1 dioecious)
CGCATATCACTTGAAAACCAGCGTGGCTTTGGAGATATCTGGCCGAAAAT
GTATGTTCCGCATATCACTTGAAAACCAGCGTGGCTTTGGAGATATCTGG
CCGAAAATGTATGTTCGGAGTACTTCCCTGTTCCTGTTTCCTCCGGAAGC
GTGTTCTCCTCCAAGGTCACGTAATACCGAGCTCCTATATGCCTCTTTCA
TTGATATATTTCCTTTCGTTCCAGCCAGACTACAAGAACGCGTGTCGTTG
ACGATTCTTTCCCCTCTTCCCTTCTCTCCTAACCCACCCATTTCCGCCGC
CTTCACCTCCGCGTCTTTTGGAGGAGTACTTCCCTGTTCCTGTTTCCTCC
GGAAGCGTGTTCTCCTCCAAGGTCACGTAATACCGAGCTCCTATATGCCT
CTTTCATTGATATATTTCCTTTCGTTCCAGCCAGACTACAAGAACGCGTG
TCGTTGACGATTCTTTCCCCTCTTCCCTTCTCTCCTAACCCACCCATTTC
CGCCGCCTTCACCTCCGCGTCTTTTGGA
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