mRNA_H-elongata_contig183131.4921.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig183131.4921.1
Unique NamemRNA_H-elongata_contig183131.4921.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183131.4921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183131contigH-elongata_contig183131:3..432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size431
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930052.5193355-CDS-H-elongata_contig183131:2..4311622930052.5193355-CDS-H-elongata_contig183131:2..431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183131 3..431 +
1691679262.1949003-CDS-H-elongata_contig183131:2..4311691679262.1949003-CDS-H-elongata_contig183131:2..431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183131 3..431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183131.4921.1prot_H-elongata_contig183131.4921.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig183131 3..431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig183131.4921.1

>prot_H-elongata_contig183131.4921.1 ID=prot_H-elongata_contig183131.4921.1|Name=mRNA_H-elongata_contig183131.4921.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
KPSLHCDSYINMEYYDDMEYYTGTKNKYIHDEINEMLRISPEDYSNYQMG
IMRRTVERERRRFAEKVEQSSLRYTWSRYSPTKKSIEEKVHEMFEINLVS
FYDYSDEQINIMQRIFDAEKRRVREENENRAKQETAVAEGEAI
back to top

mRNA from alignment at H-elongata_contig183131:3..432+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig183131.4921.1 ID=mRNA_H-elongata_contig183131.4921.1|Name=mRNA_H-elongata_contig183131.4921.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=430bp|location=Sequence derived from alignment at H-elongata_contig183131:3..432+ (Himanthalia elongata Himel1 dioecious)
AAACCCTCACTTCACTGTGATAGCTATATTAATATGGAATACTACGATGA
TATGGAGTATTATACAGGGACCAAAAACAAGTATATTCATGACGAGATAA
ATGAAATGCTAAGGATCAGTCCCGAAGATTACTCCAACTACCAGATGGGA
ATAATGCGGCGCACCGTAGAGCGAGAGAGAAGGCGCTTTGCAGAAAAGGT
GGAGCAAAGTAGTTTACGTTATACCTGGTCACGTTACTCTCCCACGAAGA
AGTCGATCGAAGAAAAGGTTCACGAAATGTTCGAGATCAATCTCGTCAGC
TTCTACGACTACTCTGATGAGCAGATAAATATCATGCAGCGCATCTTCGA
TGCTGAGAAAAGAAGAGTAAGGGAGGAAAACGAGAATAGGGCAAAGCAAG
AAACAGCGGTCGCAGAGGGAGAAGCGATCA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig183131:3..432+

>mRNA_H-elongata_contig183131.4921.1 ID=mRNA_H-elongata_contig183131.4921.1|Name=mRNA_H-elongata_contig183131.4921.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig183131:3..432+ (Himanthalia elongata Himel1 dioecious)
AAACCCTCACTTCACTGTGATAGCTATATTAATATGGAATACTACGATGA
TATGGAGTATTATACAGGGACCAAAAACAAGTATATTCATGACGAGATAA
ATGAAATGCTAAGGATCAGTCCCGAAGATTACTCCAACTACCAGATGGGA
ATAATGCGGCGCACCGTAGAGCGAGAGAGAAGGCGCTTTGCAGAAAAGGT
GGAGCAAAGTAGTTTACGTTATACCTGGTCACGTTACTCTCCCACGAAGA
AGTCGATCGAAGAAAAGGTTCACGAAATGTTCGAGATCAATCTCGTCAGC
TTCTACGACTACTCTGATGAGCAGATAAATATCATGCAGCGCATCTTCGA
TGCTGAGAAAAGAAGAGTAAGGGAGGAAAACGAGAATAGGGCAAAGCAAG
AAACAGCGGTCGCAGAGGGAGAAGCGATCAAACCCTCACTTCACTGTGAT
AGCTATATTAATATGGAATACTACGATGATATGGAGTATTATACAGGGAC
CAAAAACAAGTATATTCATGACGAGATAAATGAAATGCTAAGGATCAGTC
CCGAAGATTACTCCAACTACCAGATGGGAATAATGCGGCGCACCGTAGAG
CGAGAGAGAAGGCGCTTTGCAGAAAAGGTGGAGCAAAGTAGTTTACGTTA
TACCTGGTCACGTTACTCTCCCACGAAGAAGTCGATCGAAGAAAAGGTTC
ACGAAATGTTCGAGATCAATCTCGTCAGCTTCTACGACTACTCTGATGAG
CAGATAAATATCATGCAGCGCATCTTCGATGCTGAGAAAAGAAGAGTAAG
GGAGGAAAACGAGAATAGGGCAAAGCAAGAAACAGCGGTCGCAGAGGGAG
AAGCGATC
back to top