mRNA_H-elongata_contig183116.4920.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig183116.4920.1
Unique NamemRNA_H-elongata_contig183116.4920.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig183116.4920.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 2.230e-41
Identity = 84/142 (59.15%), Postives = 102/142 (71.83%), Query Frame = 1 
Query:   13 VSTVCGFCGDLGCHTTINAPSGKAAPVMHSTCPYAPRKDARDAAVQLSLKSARAGSDTSLCTNIVMKCIFCFQETYIWKYGMTDHVARCRNEDTLVGAGTERTNKFKKDYTVSEMEESKVLKKFKAGKLCPRRDTGS--PPP 432
            VSTVCGFCG +GC +TI+ P G+A P++HSTCP APR DAR  AV L+L SARA SDTS CTN+V+KC  C Q+ YIW YGM DHV RC   + LV  GT   +KFK+  T+SE E++KVL K KAG+   RRD G+  PPP
Sbjct: 1088 VSTVCGFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLSSARADSDTSPCTNMVLKCFLCSQDNYIWNYGMFDHVTRCHQANVLVAVGT-GADKFKEACTISESEKAKVLHKVKAGRPR-RRDQGNTLPPP 1227
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BLAST of mRNA_H-elongata_contig183116.4920.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.670e-38
Identity = 74/120 (61.67%), Postives = 87/120 (72.50%), Query Frame = 1 
Query:   10 QVSTVCGFCGDLGCHTTINAPSGKAAPVMHSTCPYAPRKDARDAAVQLSLKSARAGSDTSLCTNIVMKCIFCFQETYIWKYGMTDHVARCRNEDTLVGAGTERTNKFKKDYTVSEMEESK 369
            +VST CGFCG +G  TTI+ P GKA P++HSTCP APR DAR  AV L+L SARAGSDTSLCTN+V KC FC Q  YIWKY M+DH+ RC   D LV  GT   N FK+  T+SE E++K
Sbjct:  410 KVSTACGFCGGVGRPTTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLSSARAGSDTSLCTNMVFKCFFCSQYNYIWKYSMSDHITRCHQADVLVAEGTGADN-FKETCTISESEKAK 528
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BLAST of mRNA_H-elongata_contig183116.4920.1 vs. uniprot
Match: D7FNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW9_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 4.700e-22
Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = 1 
Query:  202 IVMKCIFCFQETYIWKYGMTDHVARCRNEDTLVGAGTERTNKFKKDYTVSEMEESKVLKKFKAGKLCPRRDTGSP--PPGARRSVSGNGAVGSGVPGT 489
            +V+KC+FC Q+TYIWKYGM++HV RC  ED LV AGT   ++FK+ YT+SE E++KVL+KFKAG+   RR  G+   P GA  S  GNG  G  + GT
Sbjct:    1 MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGT-TVDRFKEAYTISESEKAKVLQKFKAGRPR-RRGQGNEALPTGALGSTEGNGTFGRNMSGT 96
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183116.4920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K6M3_9PHAE2.230e-4159.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L2E6_9PHAE1.670e-3861.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNW9_ECTSI4.700e-2254.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183116contigH-elongata_contig183116:10..834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size825
Cds size819
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930052.4452965-UTR-H-elongata_contig183116:9..151622930052.4452965-UTR-H-elongata_contig183116:9..15Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig183116 10..15 +
1691679262.1780853-UTR-H-elongata_contig183116:9..151691679262.1780853-UTR-H-elongata_contig183116:9..15Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig183116 10..15 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930052.461585-CDS-H-elongata_contig183116:15..8341622930052.461585-CDS-H-elongata_contig183116:15..834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183116 16..834 +
1691679262.1865287-CDS-H-elongata_contig183116:15..8341691679262.1865287-CDS-H-elongata_contig183116:15..834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183116 16..834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183116.4920.1prot_H-elongata_contig183116.4920.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig183116 16..834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig183116.4920.1

>prot_H-elongata_contig183116.4920.1 ID=prot_H-elongata_contig183116.4920.1|Name=mRNA_H-elongata_contig183116.4920.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=273bp
MQVSTVCGFCGDLGCHTTINAPSGKAAPVMHSTCPYAPRKDARDAAVQLS
LKSARAGSDTSLCTNIVMKCIFCFQETYIWKYGMTDHVARCRNEDTLVGA
GTERTNKFKKDYTVSEMEESKVLKKFKAGKLCPRRDTGSPPPGARRSVSG
NGAVGSGVPGTWPQGEQEEEEEEGDDDDEEQEEEEQEQEEEEEEEEDDDE
DEDQEDQDGGKDDEEGDGWEEGVVEGQRGRKRRRAGSSSCSSEAPHENVQ
DPVRMSKRGRTLRAFRRVDFAP*
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mRNA from alignment at H-elongata_contig183116:10..834+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig183116.4920.1 ID=mRNA_H-elongata_contig183116.4920.1|Name=mRNA_H-elongata_contig183116.4920.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=825bp|location=Sequence derived from alignment at H-elongata_contig183116:10..834+ (Himanthalia elongata Himel1 dioecious)
CAGGCTATGCAGGTGAGCACTGTATGCGGCTTCTGCGGTGACCTCGGATG
CCATACCACAATCAACGCCCCATCCGGCAAGGCTGCGCCCGTCATGCACT
CCACCTGTCCCTATGCTCCTCGCAAGGACGCGCGTGATGCGGCTGTCCAA
CTTAGCCTGAAAAGTGCGAGGGCAGGCTCGGACACCTCACTGTGCACCAA
CATCGTCATGAAGTGCATCTTCTGCTTTCAGGAGACGTACATATGGAAAT
ATGGTATGACCGACCACGTCGCCAGATGCCGCAACGAGGACACACTAGTT
GGGGCCGGCACAGAGAGGACAAATAAGTTTAAGAAGGACTATACTGTGTC
GGAGATGGAGGAGAGCAAGGTGCTGAAGAAGTTCAAAGCCGGGAAGCTTT
GCCCTCGTCGCGACACCGGCAGTCCCCCCCCTGGCGCACGTAGGAGCGTG
TCGGGGAATGGCGCTGTAGGCAGCGGTGTGCCGGGCACCTGGCCCCAAGG
GGAGCAGGAGGAGGAAGAGGAAGAGGGCGACGACGACGACGAAGAACAAG
AAGAAGAAGAACAAGAACAAGAAGAAGAAGAAGAAGAAGAAGAAGATGAT
GATGAGGATGAAGACCAGGAGGATCAAGACGGGGGGAAAGACGACGAGGA
GGGCGACGGATGGGAGGAAGGGGTTGTAGAAGGGCAGCGGGGGAGGAAAA
GGCGACGAGCGGGGAGTAGCAGCTGTAGTAGCGAGGCACCACACGAAAAC
GTGCAAGACCCCGTGCGTATGAGTAAGCGAGGCAGAACACTTAGGGCGTT
TCGCCGTGTAGATTTTGCTCCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig183116:10..834+

>mRNA_H-elongata_contig183116.4920.1 ID=mRNA_H-elongata_contig183116.4920.1|Name=mRNA_H-elongata_contig183116.4920.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1638bp|location=Sequence derived from alignment at H-elongata_contig183116:10..834+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGTGAGCACTGTATGCGGCTTCTGCGGTGACCTCGGATGCCATAC
CACAATCAACGCCCCATCCGGCAAGGCTGCGCCCGTCATGCACTCCACCT
GTCCCTATGCTCCTCGCAAGGACGCGCGTGATGCGGCTGTCCAACTTAGC
CTGAAAAGTGCGAGGGCAGGCTCGGACACCTCACTGTGCACCAACATCGT
CATGAAGTGCATCTTCTGCTTTCAGGAGACGTACATATGGAAATATGGTA
TGACCGACCACGTCGCCAGATGCCGCAACGAGGACACACTAGTTGGGGCC
GGCACAGAGAGGACAAATAAGTTTAAGAAGGACTATACTGTGTCGGAGAT
GGAGGAGAGCAAGGTGCTGAAGAAGTTCAAAGCCGGGAAGCTTTGCCCTC
GTCGCGACACCGGCAGTCCCCCCCCTGGCGCACGTAGGAGCGTGTCGGGG
AATGGCGCTGTAGGCAGCGGTGTGCCGGGCACCTGGCCCCAAGGGGAGCA
GGAGGAGGAAGAGGAAGAGGGCGACGACGACGACGAAGAACAAGAAGAAG
AAGAACAAGAACAAGAAGAAGAAGAAGAAGAAGAAGAAGATGATGATGAG
GATGAAGACCAGGAGGATCAAGACGGGGGGAAAGACGACGAGGAGGGCGA
CGGATGGGAGGAAGGGGTTGTAGAAGGGCAGCGGGGGAGGAAAAGGCGAC
GAGCGGGGAGTAGCAGCTGTAGTAGCGAGGCACCACACGAAAACGTGCAA
GACCCCGTGCGTATGAGTAAGCGAGGCAGAACACTTAGGGCGTTTCGCCG
TGTAGATTTTGCTCCCTGAATGCAGGTGAGCACTGTATGCGGCTTCTGCG
GTGACCTCGGATGCCATACCACAATCAACGCCCCATCCGGCAAGGCTGCG
CCCGTCATGCACTCCACCTGTCCCTATGCTCCTCGCAAGGACGCGCGTGA
TGCGGCTGTCCAACTTAGCCTGAAAAGTGCGAGGGCAGGCTCGGACACCT
CACTGTGCACCAACATCGTCATGAAGTGCATCTTCTGCTTTCAGGAGACG
TACATATGGAAATATGGTATGACCGACCACGTCGCCAGATGCCGCAACGA
GGACACACTAGTTGGGGCCGGCACAGAGAGGACAAATAAGTTTAAGAAGG
ACTATACTGTGTCGGAGATGGAGGAGAGCAAGGTGCTGAAGAAGTTCAAA
GCCGGGAAGCTTTGCCCTCGTCGCGACACCGGCAGTCCCCCCCCTGGCGC
ACGTAGGAGCGTGTCGGGGAATGGCGCTGTAGGCAGCGGTGTGCCGGGCA
CCTGGCCCCAAGGGGAGCAGGAGGAGGAAGAGGAAGAGGGCGACGACGAC
GACGAAGAACAAGAAGAAGAAGAACAAGAACAAGAAGAAGAAGAAGAAGA
AGAAGAAGATGATGATGAGGATGAAGACCAGGAGGATCAAGACGGGGGGA
AAGACGACGAGGAGGGCGACGGATGGGAGGAAGGGGTTGTAGAAGGGCAG
CGGGGGAGGAAAAGGCGACGAGCGGGGAGTAGCAGCTGTAGTAGCGAGGC
ACCACACGAAAACGTGCAAGACCCCGTGCGTATGAGTAAGCGAGGCAGAA
CACTTAGGGCGTTTCGCCGTGTAGATTTTGCTCCCTGA
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