mRNA_H-elongata_contig183099.4917.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig183099.4917.1
Unique NamemRNA_H-elongata_contig183099.4917.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig183099.4917.1 vs. uniprot
Match: D7G770_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G770_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 1.620e-46
Identity = 76/96 (79.17%), Postives = 89/96 (92.71%), Query Frame = 1
Query:    7 KIALLGKSSKETKVKEIATMGPDLVVASKNDTMNNCMSKMVARDIRHLPVVDEETGTVVGMLSVKDLLKEVTREKDDLMTKVTELKIGRGGFFEHT 294
            K+ALLGK+SK T VKEIATMG +LV+ASK+DTM +CM+KMVARDIRHLPVVDEE G VVGMLSVKDLLKEVTREK++++TKVT+ K+GRGGFFEHT
Sbjct:  115 KVALLGKASKSTPVKEIATMGANLVIASKSDTMQDCMAKMVARDIRHLPVVDEEKGQVVGMLSVKDLLKEVTREKEEILTKVTDFKLGRGGFFEHT 210          
BLAST of mRNA_H-elongata_contig183099.4917.1 vs. uniprot
Match: A0A835YGF7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGF7_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.060e-39
Identity = 64/96 (66.67%), Postives = 85/96 (88.54%), Query Frame = 1
Query:    7 KIALLGKSSKETKVKEIATMGPDLVVASKNDTMNNCMSKMVARDIRHLPVVDEETGTVVGMLSVKDLLKEVTREKDDLMTKVTELKIGRGGFFEHT 294
            KIALLG+ S+ TKVKE+ATMG +++VA K+D++++CM KM+ARDIRHLPV+DEE+GTVVGMLS+KDL+KEV  EK+ L+ K+ + K+GRGGFFEHT
Sbjct:  115 KIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFFEHT 210          
BLAST of mRNA_H-elongata_contig183099.4917.1 vs. uniprot
Match: A0A7S1XTH5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTH5_9STRA)

HSP 1 Score: 129 bits (324), Expect = 6.760e-36
Identity = 60/97 (61.86%), Postives = 79/97 (81.44%), Query Frame = 1
Query:    1 LVKIALLGKSSKETKVKEIATMGPDLVVASKNDTMNNCMSKMVARDIRHLPVVDEETGTVVGMLSVKDLLKEVTREKDDLMTKVTELKIGRGGFFEH 291
            + KIALLG+ S +TKV E+ T G ++VVA   D++  CM KM+ARDIRHLPVV+EETG VVGMLSVKDL+KE+ +EKD+++TK+T+  +GRG FFEH
Sbjct:   90 VTKIALLGRKSVDTKVSEVCTSGANMVVARTTDSVQECMGKMLARDIRHLPVVEEETGQVVGMLSVKDLIKELVKEKDEIITKLTDFTMGRGAFFEH 186          
BLAST of mRNA_H-elongata_contig183099.4917.1 vs. uniprot
Match: A0A7S1U998_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U998_9STRA)

HSP 1 Score: 129 bits (324), Expect = 7.940e-35
Identity = 60/97 (61.86%), Postives = 79/97 (81.44%), Query Frame = 1
Query:    1 LVKIALLGKSSKETKVKEIATMGPDLVVASKNDTMNNCMSKMVARDIRHLPVVDEETGTVVGMLSVKDLLKEVTREKDDLMTKVTELKIGRGGFFEH 291
            + KIALLG+ S +TKV E+ T G ++VVA   D++  CM KM+ARDIRHLPVV+EETG VVGMLSVKDL+KE+ +EKD+++TK+T+  +GRG FFEH
Sbjct:  186 VTKIALLGRKSVDTKVSEVCTSGANMVVARTTDSVQECMGKMLARDIRHLPVVEEETGQVVGMLSVKDLIKELVKEKDEIITKLTDFTMGRGAFFEH 282          
BLAST of mRNA_H-elongata_contig183099.4917.1 vs. uniprot
Match: A0A6C0H1P6_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0H1P6_9ZZZZ)

HSP 1 Score: 112 bits (280), Expect = 1.980e-29
Identity = 46/93 (49.46%), Postives = 74/93 (79.57%), Query Frame = 1
Query:    7 KIALLGKSSKETKVKEIATMGPDLVVASKNDTMNNCMSKMVARDIRHLPVVDEETGTVVGMLSVKDLLKEVTREKDDLMTKVTELKIGRGGFF 285
            K+A LGK+    K+KEI T GP +++A K+D++  CM+KM+ +DIRHL V+D++    VGM+S+KDL+KE+ ++KDD++T++T+ K+G+GGFF
Sbjct:   76 KVAALGKNGDVVKIKEICTYGPHIIIAKKDDSLEQCMNKMLFKDIRHLLVIDDKNEEFVGMISIKDLIKEIMKDKDDMITRLTDFKLGKGGFF 168          
BLAST of mRNA_H-elongata_contig183099.4917.1 vs. uniprot
Match: D7FXG6_ECTSI (CBS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXG6_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 3.600e-29
Identity = 50/85 (58.82%), Postives = 70/85 (82.35%), Query Frame = 1
Query:    7 KIALLGKSSKETKVKEIATMGPDLVVASKNDTMNNCMSKMVARDIRHLPVVDEETGTVVGMLSVKDLLKEVTREKDDLMTKVTEL 261
            KIALLGK+SK+T VKEI T GP +V A+++DT+  C+ KM+A D+RHLPV+D++TG V G++SVKDL+KE T+E+DDL+ K+  L
Sbjct:   29 KIALLGKASKDTTVKEICTRGPKMVAAARSDTIEACVKKMIAADVRHLPVIDDDTGEVFGLISVKDLVKEYTKERDDLLMKMLGL 113          
BLAST of mRNA_H-elongata_contig183099.4917.1 vs. uniprot
Match: A0A7R9UAT3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAT3_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.120e-28
Identity = 53/97 (54.64%), Postives = 77/97 (79.38%), Query Frame = 1
Query:    1 LVKIALLGKSSKETKVKEIATMGPDLVVASKNDTMNNCMSKMVARDIRHLPVVDEETGTVVGMLSVKDLLKEVTREKDDLMTKVTELKIGRGGFFEH 291
            + K+ALLG+ S + KV EI T   ++VVA+ +D++ +CM  M+ARDIRHLPVV E+ G VVGMLSVKDL+KE+ +EKD++++K+T+  +GRG +FEH
Sbjct:  129 VTKVALLGRKSVDVKVSEICTSEANMVVANTSDSVQDCMGMMLARDIRHLPVVGED-GDVVGMLSVKDLIKELVKEKDEMISKLTDFTMGRGAYFEH 224          
BLAST of mRNA_H-elongata_contig183099.4917.1 vs. uniprot
Match: A0A6C0DQH1_9ZZZZ (CBS domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DQH1_9ZZZZ)

HSP 1 Score: 110 bits (274), Expect = 1.550e-28
Identity = 46/93 (49.46%), Postives = 71/93 (76.34%), Query Frame = 1
Query:    7 KIALLGKSSKETKVKEIATMGPDLVVASKNDTMNNCMSKMVARDIRHLPVVDEETGTVVGMLSVKDLLKEVTREKDDLMTKVTELKIGRGGFF 285
            K++ LGK  K  KVKEI T  P+L++A K DT+  CM+KM+ +DIRHL V+DE     +GM+S+KDL+KE+ ++K+D++T++T+L  G+GG+F
Sbjct:   75 KVSALGKDDKTVKVKEICTYKPNLIIAKKGDTIEQCMNKMLVKDIRHLLVIDESNNEFIGMISIKDLIKEIMKDKNDIITRLTDLTTGKGGYF 167          
BLAST of mRNA_H-elongata_contig183099.4917.1 vs. uniprot
Match: A0A6C0AT30_9ZZZZ (CBS domain-containing protein n=2 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0AT30_9ZZZZ)

HSP 1 Score: 106 bits (265), Expect = 3.290e-27
Identity = 46/93 (49.46%), Postives = 73/93 (78.49%), Query Frame = 1
Query:    7 KIALLGKSSKETKVKEIATMGPDLVVASKNDTMNNCMSKMVARDIRHLPVVDEETGTVVGMLSVKDLLKEVTREKDDLMTKVTELKIGRGGFF 285
            K+A L K   + KVK+I T GP ++ A+K DT+++CM+KM+ +DIRHL VVD++    +GM+S+KDL+KEV ++K D++T++++ KIG+GGFF
Sbjct:   72 KVAALDKDIDKLKVKDICTYGPTIITANKTDTLDDCMNKMMFKDIRHLLVVDDKNQDFIGMISIKDLIKEVLKDKTDIITRLSDFKIGKGGFF 164          
BLAST of mRNA_H-elongata_contig183099.4917.1 vs. uniprot
Match: A0A6C0HBS7_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HBS7_9ZZZZ)

HSP 1 Score: 105 bits (263), Expect = 8.150e-27
Identity = 42/93 (45.16%), Postives = 74/93 (79.57%), Query Frame = 1
Query:    7 KIALLGKSSKETKVKEIATMGPDLVVASKNDTMNNCMSKMVARDIRHLPVVDEETGTVVGMLSVKDLLKEVTREKDDLMTKVTELKIGRGGFF 285
            K+A L K++++ KVKE+ T  P++++A K DT+  CM+KM+ +DIRHL V+D++    +GM+S+KDL+KE+ ++ +D++T++++ KIG+GGFF
Sbjct:   80 KVASLDKNAQDVKVKEVCTYEPNIIIAKKEDTLETCMNKMMFKDIRHLLVIDDKNDEFIGMISIKDLIKEIMKKNNDIITRLSDFKIGKGGFF 172          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183099.4917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G770_ECTSI1.620e-4679.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YGF7_9STRA1.060e-3966.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1XTH5_9STRA6.760e-3661.86Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1U998_9STRA7.940e-3561.86Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6C0H1P6_9ZZZZ1.980e-2949.46Uncharacterized protein n=1 Tax=viral metagenome T... [more]
D7FXG6_ECTSI3.600e-2958.82CBS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7R9UAT3_9STRA1.120e-2854.64Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6C0DQH1_9ZZZZ1.550e-2849.46CBS domain-containing protein n=1 Tax=viral metage... [more]
A0A6C0AT30_9ZZZZ3.290e-2749.46CBS domain-containing protein n=2 Tax=viral metage... [more]
A0A6C0HBS7_9ZZZZ8.150e-2745.16Uncharacterized protein n=1 Tax=viral metagenome T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183099contigH-elongata_contig183099:330..1122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.7
Seed ortholog evalue1.4e-36
Seed eggNOG ortholog2880.D7G770
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009651,GO:0009987,GO:0019725,GO:0042592,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0050897,GO:0065007,GO:0065008
EggNOG free text desc.Domain in cystathionine beta-synthase and other proteins.
EggNOG OGs2QQ7J@2759,COG0517@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930052.205706-CDS-H-elongata_contig183099:329..5061622930052.205706-CDS-H-elongata_contig183099:329..506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183099 330..506 +
1691679262.0808733-CDS-H-elongata_contig183099:329..5061691679262.0808733-CDS-H-elongata_contig183099:329..506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183099 330..506 +
1622930052.223802-CDS-H-elongata_contig183099:1002..11221622930052.223802-CDS-H-elongata_contig183099:1002..1122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183099 1003..1122 +
1691679262.0975003-CDS-H-elongata_contig183099:1002..11221691679262.0975003-CDS-H-elongata_contig183099:1002..1122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183099 1003..1122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183099.4917.1prot_H-elongata_contig183099.4917.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig183099 330..1122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig183099.4917.1

>prot_H-elongata_contig183099.4917.1 ID=prot_H-elongata_contig183099.4917.1|Name=mRNA_H-elongata_contig183099.4917.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
LVKIALLGKSSKETKVKEIATMGPDLVVASKNDTMNNCMSKMVARDIRHL
PVVDEETGTVVGMLSVKDLLKEVTREKDDLMTKVTELKIGRGGFFEHT*
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mRNA from alignment at H-elongata_contig183099:330..1122+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig183099.4917.1 ID=mRNA_H-elongata_contig183099.4917.1|Name=mRNA_H-elongata_contig183099.4917.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=793bp|location=Sequence derived from alignment at H-elongata_contig183099:330..1122+ (Himanthalia elongata Himel1 dioecious)
CTTGTAAAGATCGCGCTCCTAGGAAAGTCGAGCAAAGAGACGAAGGTTAA GGAAATCGCGACCATGGGTCCCGACTTAGTTGTAGCGTCCAAGAACGACA CCATGAATAATTGCATGTCCAAGATGGTGGCGAGGGATATCCGCCATCTC CCGGTCGTGGACGAGGAAACGGGCACGGTGAGCACTCAGCCTTTTGTTGT TTCATTATTCCGATTATAAATATTGATTTCAGCAATCGTAAGGGCAGCAA CTGTCTCCCAGGTTTGTCCGAGGACCAACATTTCGCGTTAAAGCCAACCT TCGGTTATCGTTGTCGGGTCTGATTTTCGTTGAGGGATCGACGAAGCATC GAGTGTGGAGAGAGGGGGAAAATAAAAAAAAATGGCCTCCATCTCTTTGC CCTTTGTGGCTGACAACTCGATGATCCCGGCTTGGTTTATATTCAAATCA ATAACATGTGCTTTTACCGCTAGCAGCACTGATAAGAGGCAGCAGCGGCT TTGGATACTATGACCTTTTGGCCGTTTAACGCCGCCTTTTATCCAGAGAC AGAGCAAGACAGACGAATAATTCATTATGTAGCGGTTCTGTCATACACCG CCCTACAGGAGGCGGTTCTTCCCGAGTTCTGAAAATCTCCGTTTGCTCGA TTGCTTCCGCCGTCCCTCGGAAGGTGGTGGGCATGCTGAGTGTGAAGGAC CTATTGAAAGAGGTGACGCGCGAAAAAGATGACCTTATGACCAAGGTTAC TGAGTTAAAGATCGGCCGCGGTGGATTCTTCGAACACACCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig183099:330..1122+

>mRNA_H-elongata_contig183099.4917.1 ID=mRNA_H-elongata_contig183099.4917.1|Name=mRNA_H-elongata_contig183099.4917.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig183099:330..1122+ (Himanthalia elongata Himel1 dioecious)
CTTGTAAAGATCGCGCTCCTAGGAAAGTCGAGCAAAGAGACGAAGGTTAA
GGAAATCGCGACCATGGGTCCCGACTTAGTTGTAGCGTCCAAGAACGACA
CCATGAATAATTGCATGTCCAAGATGGTGGCGAGGGATATCCGCCATCTC
CCGGTCGTGGACGAGGAAACGGGCACGCTTGTAAAGATCGCGCTCCTAGG
AAAGTCGAGCAAAGAGACGAAGGTTAAGGAAATCGCGACCATGGGTCCCG
ACTTAGTTGTAGCGTCCAAGAACGACACCATGAATAATTGCATGTCCAAG
ATGGTGGCGAGGGATATCCGCCATCTCCCGGTCGTGGACGAGGAAACGGG
CACGGTGGTGGGCATGCTGAGTGTGAAGGACCTATTGAAAGAGGTGACGC
GCGAAAAAGATGACCTTATGACCAAGGTTACTGAGTTAAAGATCGGCCGC
GGTGGATTCTTCGAACACACCTGAGTGGTGGGCATGCTGAGTGTGAAGGA
CCTATTGAAAGAGGTGACGCGCGAAAAAGATGACCTTATGACCAAGGTTA
CTGAGTTAAAGATCGGCCGCGGTGGATTCTTCGAACACACCTGA
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