mRNA_H-elongata_contig18307.4916.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18307.4916.1
Unique NamemRNA_H-elongata_contig18307.4916.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig18307.4916.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 7.030e-54
Identity = 123/407 (30.22%), Postives = 198/407 (48.65%), Query Frame = 1
Query:  109 TPIRIVLVTAAAKDGELCHFDAEQAFLKADIDGELYIEIPEEYQKFPGAVGRLNKAICELVQAGKCWNNKFCGDMAAIGFGQGKADPCVFRKVVDGEVEVVVVVHVDDILAHAKDKVTIDRFAAELGQKFKLKQWGRL-----------------------------------------------------------------------------------LCAVASFCKNPGPAH---KKEVMNYFLRTKDWEITYG-GQGCGLCMEAYMDSDFGACLDTKRSVSGAVLMLTKGAISWYSAIQEVTASGTSEAEYVALSEAVKDILFSRQVKKFMEPSMGVGAVNVFEDNEGAIKLATIKHASRRTKHIDVKHHMVRDTSDAQKVKVVYVRSIDQHADLLTKPFDK 1068
            TP +++   A   + +LCHFD EQAF++++++ ++Y+ +P+      G + +L K++  L QA + W+      + A+GF Q  AD CVFR + DG V +++VVHVDDI A   ++   D+F A+L +   +K  G L                                                                                   + AVA +C +P   H     +++ Y  RT  + I++  G   G  ++ Y D+DF +    +RSVSG ++    GA+SW+S  Q+     T+EAEYVAL + VK+ILF RQ+ +FM P +G+  + VFEDN+GAI+LA    ++  +KHIDV+HH +R+  + +++ V++V S  Q AD LTK   K
Sbjct:   43 TPAKMLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPK 448          
BLAST of mRNA_H-elongata_contig18307.4916.1 vs. uniprot
Match: A0A6H5L4L4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L4_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 1.290e-53
Identity = 118/344 (34.30%), Postives = 194/344 (56.40%), Query Frame = 1
Query:   28 KCRLAAQGFWQVNGVYYTEKYQPTPATTPIRIVLVTAAAKDGELCHFDAEQAFLKADIDGELYIEIPEEYQKFPGAVGRLNKAICELVQAGKCWNNKFCGDMAAIGFGQGKADPCVFRKVVDGEVEVVVVVHVDDILAHAKDK-VTIDRFAAELGQKFKLKQWGRLLCAVASFCKNPGPAHKKEVMNYFLRTKDWEITYGGQGCGLCMEAYMDSDFGACLDTKRSVSGAVLMLTKGAISWYSAIQEVTASGTSEAEYVALSEAVKDILFSRQVKKFMEPSMGVGAVNVFEDNEGAIKLATIKHASRRTKHIDVKHHMVRDTSDAQKVKVVYVRSIDQHADLLTK 1056
            K RL A+G  Q   V   E Y PT A + +R++   A  ++  L  FD +QAF+++D+D ++++ +PE   +  G + +LNK++  L QA + WN+     +  +G  Q  AD CVFR + +G V V +VVHVDDI +  + + + +  F  +  ++F    + +L+ ++        P     V+ ++               GL ME + D+D+ + +  +RSVSG ++M   G ISW S  Q+     T+EAEYV+L+  +K++L  RQV +FM P  G+  + VFEDN+GAI+LA    ++  +KHIDV+HH +R+  D +++ + +V S  QHAD LTK
Sbjct:  917 KSRLVARGDMQRVHVDCGETYAPTVAVSSVRLLAARACEQNLSLRRFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWNSHLARCLICLGIIQCLADTCVFRLIKEGRVVVTLVVHVDDIFSIGERRGLKLSEFDQD--EEFVSWPFRKLIGSLMWLATQTRPDIANAVLVFW---------------GLSMEVFADADYASKVADRRSVSGGLVMCGGGCISWCSRTQKCVTLSTTEAEYVSLAVVMKEVLVLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVDRKEISIFHVESAYQHADFLTK 1243          
BLAST of mRNA_H-elongata_contig18307.4916.1 vs. uniprot
Match: A0A6H5KJP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP2_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 5.200e-53
Identity = 111/353 (31.44%), Postives = 194/353 (54.96%), Query Frame = 1
Query:   76 YTEKYQPTPATTPIRIVLVTAAAKDGELCHFDAEQAFLKADIDGELYIEIPEEYQKFPGAVGRLNKAICELVQAGKCWNNKFCGDMAAIGFGQGKADPCVFRKVVDGEVEVVVVVHVDDILAHAKDKVTIDR-------------FAAELGQKFKLKQWGR-----LLCAVASFCKNPGPAHKKE---VMNYFLRTKDWEITYG-GQGCGLCMEAYMDSDFGACLDTKRSVSGAVLMLTKGAISWYSAIQEVTASGTSEAEYVALSEAVKDILFSRQVKKFMEPSMGVGAVNVFEDNEGAIKLATIKHASRRTKHIDVKHHMVRDTSDAQKVKVVYVRSIDQHADLLTKPFDK 1068
            + E + PT + + +R++   A  ++ +LCHFD +QAF++++++ ++++ +P+   +  G + +L K++  L QA + W+      +  +GF Q  AD CVFR + DG V +++VVHV  ++  A   V++               F   +G    L    R      + AVA +C +P   H K    ++ Y  RT    IT+  G   G+ M+ ++D+D  +    +RSVSG V+M   G ++W+S  Q+     T+E EYVA+++ +K++LF RQV + M     +  + VFEDN+GAI++A     +  +KHIDV+HH +R+  + +++ + +V S  QHAD LTK   K
Sbjct:    8 FGELFAPTVSVSSVRLLAALACEQNLDLCHFDIQQAFVQSELEDDVFMRLPQGCGRLSGLIVKLYKSLYGLKQASRQWHAHLTKCLLLLGFVQCLADACVFRLMEDGCVIMIIVVHVGFLMWLATXPVSVKLTDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADNASKAADRRSVSGGVVMCGGGGVTWFSRTQKCVTLSTTEVEYVAIADVLKEVLFLRQVWRLMLLDADMSCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISK 360          
BLAST of mRNA_H-elongata_contig18307.4916.1 vs. uniprot
Match: A0A6H5K4U5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U5_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 6.340e-53
Identity = 132/409 (32.27%), Postives = 208/409 (50.86%), Query Frame = 1
Query:   10 GKVEKYKCRLAAQGFWQVNGVYYTEKYQPTPATTPIRIVLVTAAAKDGELCHFDAEQAFLKADIDGELYIEIPEEYQKFPGAVGRLNKAICELVQAGKCWNNKFCGDMAAIGFGQGKADPCVFRKVVDGEVEVVVVVHVDDILAHAKDKVTIDRFAAELGQKFKLK-----QW------------GRLLCAVASFCKN-------PGP----------------------------AHKKEVM---NYFLRTKDWEITYG-GQGCGLCMEAYMDSDFGACLDTKRSVSGAVLMLTKGAISWYSAIQEVTASGTSEAEYVALSEAVKDILFSRQVKKFMEPSMGVGAVNVFEDNEGAIKLATIKHASRRTKHIDVKHHMVRDTSDAQKVKVVYVRSIDQHADLLTKPFDK 1068
            G   K K RL A+G  Q   + + E Y PT + + +R++  +A   + +LCHFD EQAF++++++ ++ + +P+      G +  L K++  L Q+ + W+      + A+GF Q  AD CVFR +  G V +++VVHVDDI A   ++   D+F A+L +   +K     +W            GRL  +  +F          PG                              H  E M    Y  RT    +++  G   G  ++ Y D+DF +    +RSVSG ++    G +SW+S  Q+     T+EAEYVAL + VK+ILF RQV +FM P + +  + VFEDN+GAI+LA    ++  +KHIDV+HH +R+  + ++V V++V S  Q AD LTK   K
Sbjct: 1151 GWATKVKARLVARGDMQREYIDFGELYAPTVSVSCVRMLAASACELNLDLCHFDVEQAFVRSELEEDVNMRLPQGCGALSGMIVILGKSLYGLRQSPRQWHAMLKRCLVALGFEQCMADACVFRLIEGGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCLYERSKETGRLTISQQTFADELAAEYGVPGGKSVPMSSGVKLSDFDADEEATDFPFRELVHWDEAMAILGYAKRTSYMGVSFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGVVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQVWRFMLPKVSMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEVSVIHVPSPYQRADFLTKSLPK 1558          
BLAST of mRNA_H-elongata_contig18307.4916.1 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 2.550e-51
Identity = 139/440 (31.59%), Postives = 205/440 (46.59%), Query Frame = 1
Query:   10 GKVEKYKCRLAAQGFWQVNGVYYTEKYQPTPATTPIRIVLVTAAAKDGELCHFDAEQAFLKADIDGELYIEIPEEYQKFPGAVGRLNKAICELVQAGKCWNNKFCGDMAAIGFGQGKADPCVFRKVVDGEVEVVVVVHVDDILAHAKDKVTIDRFAAELGQ----------------------------------------KF--------------KLKQW---------------GRLLC--------------AVASFCKNPGPAHKK---EVMNYFLRTKDWEITYG-GQGCGLCMEAYMDSDFGACLDTKRSVSGAVLMLTKGAISWYSAIQEVTASGTSEAEYVALSEAVKDILFSRQVKKFMEPSMGVGAVNVFEDNEGAIKLATIKHASRRTKHIDVKHHMVRDTSDAQKVKVVYVRSIDQHADLLTKPFDK 1068
            G   + K RL A+GF Q  GV + E + P P+ T IR++   A   D +LCHFDAEQAF+++++D  ++I +P       G V RL +++  L QA + W++     M ++GF    AD CV R +  G V +VVV+HVDDI +    K   D+F  +L +                                        KF              KL+Q+               G L+               AVA +   P   H +    V+ Y   T  + IT+  G   G  ME ++DSDF      +RSVSGA++M     + +    Q+     ++EAEYVA+S+ +K+ +F R + KF+ P   VG   V+EDN GAI LA+    +  +KHID++HH +R+     + KVV+VRS  Q AD LTKP  K
Sbjct:  124 GYAVRAKARLVARGFAQREGVDFFETFSPYPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGL-KSRCDQFGVDLNRYVPISNLGELRWYAGCRFSRDTVLGTVTISQQAVAEKIVAKFGVTTDKETPMVVGLKLEQYDADEPDVDEPFRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPK 562          
BLAST of mRNA_H-elongata_contig18307.4916.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 4.740e-51
Identity = 123/407 (30.22%), Postives = 198/407 (48.65%), Query Frame = 1
Query:  109 TPIRIVLVTAAAKDGELCHFDAEQAFLKADIDGELYIEIPEEYQKFPGAVGRLNKAICELVQAGKCWNNKFCGDMAAIGFGQGKADPCVFRKVVDGEVEVVVVVHVDDILAHAKDKVTIDRFAAELGQKFKLKQWGRL-----------------------------------------------------------------------------------LCAVASFCKNPGPAH---KKEVMNYFLRTKDWEITYG-GQGCGLCMEAYMDSDFGACLDTKRSVSGAVLMLTKGAISWYSAIQEVTASGTSEAEYVALSEAVKDILFSRQVKKFMEPSMGVGAVNVFEDNEGAIKLATIKHASRRTKHIDVKHHMVRDTSDAQKVKVVYVRSIDQHADLLTKPFDK 1068
            TP +++   A   + +LCHFD EQAF++++++ ++Y+ +P+      G + +L K++  L QA + W+      + A+GF Q  AD CVFR + DG V +++VVHVDDI A   ++   D+F A+L +   +K  G L                                                                                   + AVA +C +P   H     +++ Y  RT  + I++  G   G  ++ Y D+DF +    +RSVSG ++    GA+SW+S  Q+     T+EAEYVAL + VK+ILF RQ+ +FM P +G+  + VFEDN+GAI+LA    ++  +KHIDV+HH +R+  + +++ V++V S  Q AD LTK   K
Sbjct: 1379 TPAKMLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPK 1784          
BLAST of mRNA_H-elongata_contig18307.4916.1 vs. uniprot
Match: A0A6H5L867_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L867_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 4.750e-51
Identity = 123/407 (30.22%), Postives = 198/407 (48.65%), Query Frame = 1
Query:  109 TPIRIVLVTAAAKDGELCHFDAEQAFLKADIDGELYIEIPEEYQKFPGAVGRLNKAICELVQAGKCWNNKFCGDMAAIGFGQGKADPCVFRKVVDGEVEVVVVVHVDDILAHAKDKVTIDRFAAELGQKFKLKQWGRL-----------------------------------------------------------------------------------LCAVASFCKNPGPAH---KKEVMNYFLRTKDWEITYG-GQGCGLCMEAYMDSDFGACLDTKRSVSGAVLMLTKGAISWYSAIQEVTASGTSEAEYVALSEAVKDILFSRQVKKFMEPSMGVGAVNVFEDNEGAIKLATIKHASRRTKHIDVKHHMVRDTSDAQKVKVVYVRSIDQHADLLTKPFDK 1068
            TP +++   A   + +LCHFD EQAF++++++ ++Y+ +P+      G + +L K++  L QA + W+      + A+GF Q  AD CVFR + DG V +++VVHVDDI A   ++   D+F A+L +   +K  G L                                                                                   + AVA +C +P   H     +++ Y  RT  + I++  G   G  ++ Y D+DF +    +RSVSG ++    GA+SW+S  Q+     T+EAEYVAL + VK+ILF RQ+ +FM P +G+  + VFEDN+GAI+LA    ++  +KHIDV+HH +R+  + +++ V++V S  Q AD LTK   K
Sbjct: 1165 TPAKMLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPK 1570          
BLAST of mRNA_H-elongata_contig18307.4916.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 5.040e-51
Identity = 123/407 (30.22%), Postives = 198/407 (48.65%), Query Frame = 1
Query:  109 TPIRIVLVTAAAKDGELCHFDAEQAFLKADIDGELYIEIPEEYQKFPGAVGRLNKAICELVQAGKCWNNKFCGDMAAIGFGQGKADPCVFRKVVDGEVEVVVVVHVDDILAHAKDKVTIDRFAAELGQKFKLKQWGRL-----------------------------------------------------------------------------------LCAVASFCKNPGPAH---KKEVMNYFLRTKDWEITYG-GQGCGLCMEAYMDSDFGACLDTKRSVSGAVLMLTKGAISWYSAIQEVTASGTSEAEYVALSEAVKDILFSRQVKKFMEPSMGVGAVNVFEDNEGAIKLATIKHASRRTKHIDVKHHMVRDTSDAQKVKVVYVRSIDQHADLLTKPFDK 1068
            TP +++   A   + +LCHFD EQAF++++++ ++Y+ +P+      G + +L K++  L QA + W+      + A+GF Q  AD CVFR + DG V +++VVHVDDI A   ++   D+F A+L +   +K  G L                                                                                   + AVA +C +P   H     +++ Y  RT  + I++  G   G  ++ Y D+DF +    +RSVSG ++    GA+SW+S  Q+     T+EAEYVAL + VK+ILF RQ+ +FM P +G+  + VFEDN+GAI+LA    ++  +KHIDV+HH +R+  + +++ V++V S  Q AD LTK   K
Sbjct: 1233 TPAKMLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPK 1638          
BLAST of mRNA_H-elongata_contig18307.4916.1 vs. uniprot
Match: A0A6H5JG40_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG40_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 5.960e-51
Identity = 122/407 (29.98%), Postives = 198/407 (48.65%), Query Frame = 1
Query:  109 TPIRIVLVTAAAKDGELCHFDAEQAFLKADIDGELYIEIPEEYQKFPGAVGRLNKAICELVQAGKCWNNKFCGDMAAIGFGQGKADPCVFRKVVDGEVEVVVVVHVDDILAHAKDKVTIDRFAAELGQKFKLKQWGRL-----------------------------------------------------------------------------------LCAVASFCKNPGPAH---KKEVMNYFLRTKDWEITYG-GQGCGLCMEAYMDSDFGACLDTKRSVSGAVLMLTKGAISWYSAIQEVTASGTSEAEYVALSEAVKDILFSRQVKKFMEPSMGVGAVNVFEDNEGAIKLATIKHASRRTKHIDVKHHMVRDTSDAQKVKVVYVRSIDQHADLLTKPFDK 1068
            TP +++   A   + +LCHFD EQAF++++++ ++Y+ +P+      G + +L K++  L QA + W+      + A+GF Q  AD CVFR + DG V +++VVHVDDI A   ++   D+F A+L +   +K  G L                                                                                   + AVA +C +P   H     +++ Y  RT  + I++  G   G  ++ Y D+DF +    +RSVSG ++    GA+SW+S  Q+     T+EAEYVAL + VK+ILF RQ+ +FM P +G+  + +FEDN+GAI+LA    ++  +KHIDV+HH +R+  + +++ V++V S  Q AD LTK   K
Sbjct:  873 TPAKMLAALACELNLDLCHFDIEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSK 1278          
BLAST of mRNA_H-elongata_contig18307.4916.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 7.020e-51
Identity = 120/349 (34.38%), Postives = 181/349 (51.86%), Query Frame = 1
Query:   10 GKVEKYKCRLAAQGFWQVNGVYYTEKYQPTPATTPIRIVLVTAAAKDGELCHFDAEQAFLKADIDGELYIEIPEEYQKFPGAVGRLNKAICELVQAGKCWNNKFCGDMAAIGFGQGKADPCVFRKVVDGEVEVVVVVHVDDILAHAKDKVTIDRFAAELGQKFKLKQWGRLLCAVASFCKNPGPAHKKEVMNYFLRTKDWEITYGGQGCGLCMEAYMDSDFGACLDTKRSVSGAVLMLTKGAISWYSAIQEVTASGTSEAEYVALSEAVKDILFSRQVKKFMEPSMGVGAVNVFEDNEGAIKLATIKHASRRTKHIDVKHHMVRDTSDAQKVKVVYVRSIDQHADLLTK 1056
            GK+ K K RL A+GF Q +GV Y E + PT     IR+V+  A   + EL H D EQAF+++ +D E+++++P       G + RLNK+   L QA + +  +   D+  IGF Q  +DPCV R ++  EV  ++ +HVDDIL +A  K   +     LG     +  G +   +         A   E+                   G     + DS F A     RS      +     +SW+S  Q+  +  TSEAEY+A+ + VK+ LF   + +F+ PS     ++VFEDNEGAI LA    +S R+KHIDV+HH +R+ ++   ++V +V S +QHAD+LTK
Sbjct:  205 GKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSWYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDIL-YAGTKRLAEVIVEALGDSLPTRNLGEVRLFLGCAFSRDREAGTIEISQE----------------GYIRSVFRDSIFVA---PARSPLPLPTIAAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTK 533          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18307.4916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFG2_9PHAE7.030e-5430.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L4L4_9PHAE1.290e-5334.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJP2_9PHAE5.200e-5331.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K4U5_9PHAE6.340e-5332.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JWG1_9PHAE2.550e-5131.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J4N2_9PHAE4.740e-5130.22Integrase catalytic domain-containing protein n=18... [more]
A0A6H5L867_9PHAE4.750e-5130.22Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBD4_9PHAE5.040e-5130.22Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JG40_9PHAE5.960e-5129.98Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5JP36_9PHAE7.020e-5134.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18307contigH-elongata_contig18307:4912..6023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score178.3
Seed ortholog evalue6.2e-42
Seed eggNOG ortholog6334.EFV58439
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,40FC4@6231,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelNematoda
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1071
Cds size1071
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930052.0849562-CDS-H-elongata_contig18307:4911..54341622930052.0849562-CDS-H-elongata_contig18307:4911..5434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18307 4912..5434 +
1691679262.0484812-CDS-H-elongata_contig18307:4911..54341691679262.0484812-CDS-H-elongata_contig18307:4911..5434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18307 4912..5434 +
1622930052.1270552-CDS-H-elongata_contig18307:5475..60231622930052.1270552-CDS-H-elongata_contig18307:5475..6023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18307 5476..6023 +
1691679262.059817-CDS-H-elongata_contig18307:5475..60231691679262.059817-CDS-H-elongata_contig18307:5475..6023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18307 5476..6023 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18307.4916.1prot_H-elongata_contig18307.4916.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18307 4912..6023 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18307.4916.1

>prot_H-elongata_contig18307.4916.1 ID=prot_H-elongata_contig18307.4916.1|Name=mRNA_H-elongata_contig18307.4916.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=357bp
RQDGKVEKYKCRLAAQGFWQVNGVYYTEKYQPTPATTPIRIVLVTAAAKD
GELCHFDAEQAFLKADIDGELYIEIPEEYQKFPGAVGRLNKAICELVQAG
KCWNNKFCGDMAAIGFGQGKADPCVFRKVVDGEVEVVVVVHVDDILAHAK
DKVTIDRFAAELGQKFKLKQWGRLLCAVASFCKNPGPAHKKEVMNYFLRT
KDWEITYGGQGCGLCMEAYMDSDFGACLDTKRSVSGAVLMLTKGAISWYS
AIQEVTASGTSEAEYVALSEAVKDILFSRQVKKFMEPSMGVGAVNVFEDN
EGAIKLATIKHASRRTKHIDVKHHMVRDTSDAQKVKVVYVRSIDQHADLL
TKPFDK*
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mRNA from alignment at H-elongata_contig18307:4912..6023+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18307.4916.1 ID=mRNA_H-elongata_contig18307.4916.1|Name=mRNA_H-elongata_contig18307.4916.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1112bp|location=Sequence derived from alignment at H-elongata_contig18307:4912..6023+ (Himanthalia elongata Himel1 dioecious)
AGACAGGACGGCAAGGTCGAGAAATACAAGTGCCGACTTGCAGCTCAAGG GTTTTGGCAGGTGAACGGTGTGTACTATACGGAAAAATACCAACCCACGC CAGCGACCACGCCAATTCGAATAGTTTTGGTCACGGCAGCGGCCAAGGAC GGTGAGCTGTGCCATTTCGACGCGGAGCAGGCATTCTTGAAAGCGGACAT CGATGGGGAGTTGTATATAGAGATTCCCGAGGAGTACCAGAAGTTTCCGG GGGCAGTGGGACGGCTGAACAAGGCCATTTGCGAACTCGTACAGGCGGGG AAGTGCTGGAACAACAAGTTCTGCGGCGATATGGCGGCGATTGGATTCGG GCAGGGAAAGGCGGATCCGTGCGTGTTCCGTAAGGTCGTTGATGGCGAGG TGGAAGTGGTGGTGGTCGTACACGTGGACGATATTCTTGCTCACGCCAAA GACAAAGTGACGATTGATAGATTTGCAGCTGAGCTTGGACAAAAGTTCAA ATTGAAGCAGTGGGGTCGCTTATGTGGACGGCGACGATGCCACGGCCGGA CATTGCGAGCGCAGTGTGCGCTGTGGCCAGTTTCTGCAAAAACCCTGGGC CGGCGCATAAGAAGGAAGTGATGAATTATTTTCTTCGCACGAAAGATTGG GAGATTACATACGGTGGACAGGGCTGTGGACTCTGCATGGAGGCATACAT GGACTCGGATTTCGGAGCCTGTCTAGATACAAAACGATCGGTGTCAGGTG CGGTGTTGATGCTGACGAAGGGGGCGATCAGCTGGTACTCAGCGATACAA GAAGTGACAGCATCGGGTACCTCAGAGGCAGAGTACGTTGCTTTATCAGA GGCGGTAAAGGATATTCTATTTTCAAGACAGGTCAAGAAGTTCATGGAAC CGTCGATGGGGGTTGGTGCAGTGAATGTGTTCGAGGATAATGAGGGGGCC ATCAAGCTGGCCACCATCAAGCATGCTAGTCGTAGGACAAAGCATATTGA TGTAAAACATCATATGGTGAGGGACACGTCTGACGCGCAAAAGGTTAAAG TAGTGTATGTGAGATCAATAGATCAGCACGCGGACTTGCTGACGAAGCCA TTTGACAAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig18307:4912..6023+

>mRNA_H-elongata_contig18307.4916.1 ID=mRNA_H-elongata_contig18307.4916.1|Name=mRNA_H-elongata_contig18307.4916.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2142bp|location=Sequence derived from alignment at H-elongata_contig18307:4912..6023+ (Himanthalia elongata Himel1 dioecious)
AGACAGGACGGCAAGGTCGAGAAATACAAGTGCCGACTTGCAGCTCAAGG
GTTTTGGCAGGTGAACGGTGTGTACTATACGGAAAAATACCAACCCACGC
CAGCGACCACGCCAATTCGAATAGTTTTGGTCACGGCAGCGGCCAAGGAC
GGTGAGCTGTGCCATTTCGACGCGGAGCAGGCATTCTTGAAAGCGGACAT
CGATGGGGAGTTGTATATAGAGATTCCCGAGGAGTACCAGAAGTTTCCGG
GGGCAGTGGGACGGCTGAACAAGGCCATTTGCGAACTCGTACAGGCGGGG
AAGTGCTGGAACAACAAGTTCTGCGGCGATATGGCGGCGATTGGATTCGG
GCAGGGAAAGGCGGATCCGTGCGTGTTCCGTAAGGTCGTTGATGGCGAGG
TGGAAGTGGTGGTGGTCGTACACGTGGACGATATTCTTGCTCACGCCAAA
GACAAAGTGACGATTGATAGATTTGCAGCTGAGCTTGGACAAAAGTTCAA
ATTGAAGCAGTGGGGTCGCTTATAGACAGGACGGCAAGGTCGAGAAATAC
AAGTGCCGACTTGCAGCTCAAGGGTTTTGGCAGGTGAACGGTGTGTACTA
TACGGAAAAATACCAACCCACGCCAGCGACCACGCCAATTCGAATAGTTT
TGGTCACGGCAGCGGCCAAGGACGGTGAGCTGTGCCATTTCGACGCGGAG
CAGGCATTCTTGAAAGCGGACATCGATGGGGAGTTGTATATAGAGATTCC
CGAGGAGTACCAGAAGTTTCCGGGGGCAGTGGGACGGCTGAACAAGGCCA
TTTGCGAACTCGTACAGGCGGGGAAGTGCTGGAACAACAAGTTCTGCGGC
GATATGGCGGCGATTGGATTCGGGCAGGGAAAGGCGGATCCGTGCGTGTT
CCGTAAGGTCGTTGATGGCGAGGTGGAAGTGGTGGTGGTCGTACACGTGG
ACGATATTCTTGCTCACGCCAAAGACAAAGTGACGATTGATAGATTTGCA
GCTGAGCTTGGACAAAAGTTCAAATTGAAGCAGTGGGGTCGCTTATTGTG
CGCTGTGGCCAGTTTCTGCAAAAACCCTGGGCCGGCGCATAAGAAGGAAG
TGATGAATTATTTTCTTCGCACGAAAGATTGGGAGATTACATACGGTGGA
CAGGGCTGTGGACTCTGCATGGAGGCATACATGGACTCGGATTTCGGAGC
CTGTCTAGATACAAAACGATCGGTGTCAGGTGCGGTGTTGATGCTGACGA
AGGGGGCGATCAGCTGGTACTCAGCGATACAAGAAGTGACAGCATCGGGT
ACCTCAGAGGCAGAGTACGTTGCTTTATCAGAGGCGGTAAAGGATATTCT
ATTTTCAAGACAGGTCAAGAAGTTCATGGAACCGTCGATGGGGGTTGGTG
CAGTGAATGTGTTCGAGGATAATGAGGGGGCCATCAAGCTGGCCACCATC
AAGCATGCTAGTCGTAGGACAAAGCATATTGATGTAAAACATCATATGGT
GAGGGACACGTCTGACGCGCAAAAGGTTAAAGTAGTGTATGTGAGATCAA
TAGATCAGCACGCGGACTTGCTGACGAAGCCATTTGACAAGTAGTGTGCG
CTGTGGCCAGTTTCTGCAAAAACCCTGGGCCGGCGCATAAGAAGGAAGTG
ATGAATTATTTTCTTCGCACGAAAGATTGGGAGATTACATACGGTGGACA
GGGCTGTGGACTCTGCATGGAGGCATACATGGACTCGGATTTCGGAGCCT
GTCTAGATACAAAACGATCGGTGTCAGGTGCGGTGTTGATGCTGACGAAG
GGGGCGATCAGCTGGTACTCAGCGATACAAGAAGTGACAGCATCGGGTAC
CTCAGAGGCAGAGTACGTTGCTTTATCAGAGGCGGTAAAGGATATTCTAT
TTTCAAGACAGGTCAAGAAGTTCATGGAACCGTCGATGGGGGTTGGTGCA
GTGAATGTGTTCGAGGATAATGAGGGGGCCATCAAGCTGGCCACCATCAA
GCATGCTAGTCGTAGGACAAAGCATATTGATGTAAAACATCATATGGTGA
GGGACACGTCTGACGCGCAAAAGGTTAAAGTAGTGTATGTGAGATCAATA
GATCAGCACGCGGACTTGCTGACGAAGCCATTTGACAAGTAG
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