mRNA_H-elongata_contig18303.4914.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18303.4914.1
Unique NamemRNA_H-elongata_contig18303.4914.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18303.4914.1 vs. uniprot
Match: A0A6H5KMF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF0_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.560e-17
Identity = 52/115 (45.22%), Postives = 63/115 (54.78%), Query Frame = 1 
Query:    4 SSEAPFDLCLTRGERDAVVLRTIEAFSLNRDQAGVLWRCARWFQPSVAAPTDSQR-------------------------GDQQTEGEERREDEENVPPVLLVHGVFGAGKSLSL 273
            S +  FDLCLTRGER+A V +T+EAF LNRDQA +LWRCA WF+P+ AA  +                            G    EG      E+  P V+LVHGVFGAGKSL+L
Sbjct:  151 SGDRVFDLCLTRGERNAEVSQTVEAFRLNRDQARLLWRCATWFRPAEAAGDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRPTEEGGGGMAGEDGAP-VVLVHGVFGAGKSLTL 264
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18303.4914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KMF0_9PHAE2.560e-1745.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18303contigH-elongata_contig18303:5942..6759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size277
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930051.8906176-CDS-H-elongata_contig18303:5941..61911622930051.8906176-CDS-H-elongata_contig18303:5941..6191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18303 5942..6191 +
1691679262.0230427-CDS-H-elongata_contig18303:5941..61911691679262.0230427-CDS-H-elongata_contig18303:5941..6191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18303 5942..6191 +
1622930051.9176571-CDS-H-elongata_contig18303:6734..67571622930051.9176571-CDS-H-elongata_contig18303:6734..6757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18303 6735..6757 +
1691679262.0302927-CDS-H-elongata_contig18303:6734..67571691679262.0302927-CDS-H-elongata_contig18303:6734..6757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18303 6735..6757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18303.4914.1prot_H-elongata_contig18303.4914.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18303 5942..6757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18303.4914.1

>prot_H-elongata_contig18303.4914.1 ID=prot_H-elongata_contig18303.4914.1|Name=mRNA_H-elongata_contig18303.4914.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
RSSEAPFDLCLTRGERDAVVLRTIEAFSLNRDQAGVLWRCARWFQPSVAA
PTDSQRGDQQTEGEERREDEENVPPVLLVHGVFGAGKSLSL
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mRNA from alignment at H-elongata_contig18303:5942..6759+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18303.4914.1 ID=mRNA_H-elongata_contig18303.4914.1|Name=mRNA_H-elongata_contig18303.4914.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=818bp|location=Sequence derived from alignment at H-elongata_contig18303:5942..6759+ (Himanthalia elongata Himel1 dioecious)
CGGAGTAGCGAAGCCCCGTTCGACCTCTGCCTCACCCGAGGAGAACGCGA
CGCCGTGGTATTGCGCACCATTGAGGCGTTCTCCTTGAACCGGGACCAAG
CCGGGGTGCTTTGGCGGTGCGCGCGGTGGTTCCAACCTTCCGTGGCCGCC
CCAACGGATAGCCAGCGAGGGGACCAACAAACAGAAGGAGAGGAAAGAAG
GGAAGACGAGGAGAATGTCCCGCCGGTGCTGCTCGTTCACGGCGTGTTCG
GTGAGAATGATTACACGACCGAGGGTTTGACTCACGGCCTGGATTGTTTC
TCGATCGATACAAGCTACCACACACACGCACACAATGTATATATACAAAA
TATTTTGTGAGCAGTAAATTCGTAAATTAGAGAGACGACAAAAACATATA
TTCCCGGATCGAGCGAGCGATTTGCTTGCTCCTGTGTGCAGCGTTGGATG
TACCTTACGTAAACGTTTCGTTGCTGACACTGTAGAAGGGTTAGCTCTAG
AGCTACGATGGGAAAAAACAACCATAATGACTATTAATACTCCCTTACCG
GAATGGTGCGGGTGACTTTGGCAGCCCTGCGTTGGCTCCATGTCATACAA
ATATCCGACCCTTCCCATGTTCCGTGCGCCTTGTCCGTTGCGCACCACGT
CTGCGCTTTTATGTCGTGCGTCTGTGCGTATTCGTGTGTATGTTCGTTTT
TGCATGTACATGTATATATGTGCGTGTGTGTGTGCGCGCGCGCTATGGTT
CCTCGGCCTTTGTGGCCGGGCGGTGATCTATCGGGACCAAAAGGCGCAGG
GAAGTCCCTATCTCTGGT
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Coding sequence (CDS) from alignment at H-elongata_contig18303:5942..6759+

>mRNA_H-elongata_contig18303.4914.1 ID=mRNA_H-elongata_contig18303.4914.1|Name=mRNA_H-elongata_contig18303.4914.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig18303:5942..6759+ (Himanthalia elongata Himel1 dioecious)
CGGAGTAGCGAAGCCCCGTTCGACCTCTGCCTCACCCGAGGAGAACGCGA
CGCCGTGGTATTGCGCACCATTGAGGCGTTCTCCTTGAACCGGGACCAAG
CCGGGGTGCTTTGGCGGTGCGCGCGGTGGTTCCAACCTTCCGTGGCCGCC
CCAACGGATAGCCAGCGAGGGGACCAACAAACAGAAGGAGAGGAAAGAAG
GGAAGACGAGGAGAATGTCCCGCCGGTGCTGCTCGTTCACGGCGTGTTCG
CGGAGTAGCGAAGCCCCGTTCGACCTCTGCCTCACCCGAGGAGAACGCGA
CGCCGTGGTATTGCGCACCATTGAGGCGTTCTCCTTGAACCGGGACCAAG
CCGGGGTGCTTTGGCGGTGCGCGCGGTGGTTCCAACCTTCCGTGGCCGCC
CCAACGGATAGCCAGCGAGGGGACCAACAAACAGAAGGAGAGGAAAGAAG
GGAAGACGAGGAGAATGTCCCGCCGGTGCTGCTCGTTCACGGCGTGTTCG
GCGCAGGGAAGTCCCTATCTCTGGCGCAGGGAAGTCCCTATCTCTG
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