mRNA_H-elongata_contig182937.4910.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig182937.4910.1
Unique NamemRNA_H-elongata_contig182937.4910.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig182937.4910.1 vs. uniprot
Match: A0A6H5KXN7_9PHAE (Transmembrane 9 superfamily member n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXN7_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 2.540e-31
Identity = 56/71 (78.87%), Postives = 65/71 (91.55%), Query Frame = 1
Query:    1 VRGDVFRAPEHLTTFSALFGTGCQLTVIVLMVILFAMAGPLHGDVYEERGELVSTFLVCYAFTSFVSGWVS 213
            V GDVFRAP+HL  FSALFGTGCQL V+VL+VILFA+AGPLHGDVYEERGE+V+TF+VCYA TS VSG++S
Sbjct:  287 VHGDVFRAPKHLMLFSALFGTGCQLAVLVLLVILFAIAGPLHGDVYEERGEMVTTFIVCYALTSLVSGYMS 357          
BLAST of mRNA_H-elongata_contig182937.4910.1 vs. uniprot
Match: D8LEY0_ECTSI (Transmembrane 9 superfamily member n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY0_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 9.980e-31
Identity = 53/68 (77.94%), Postives = 62/68 (91.18%), Query Frame = 1
Query:    1 VRGDVFRAPEHLTTFSALFGTGCQLTVIVLMVILFAMAGPLHGDVYEERGELVSTFLVCYAFTSFVSG 204
            V GDVFRAP+HL  FSALFGTGCQL V+VL+VILFA+AGPLHGDVYEERGE+V+TF+VCYA T+ +SG
Sbjct:  287 VHGDVFRAPKHLMLFSALFGTGCQLAVLVLLVILFAIAGPLHGDVYEERGEMVTTFIVCYALTTLISG 354          
BLAST of mRNA_H-elongata_contig182937.4910.1 vs. uniprot
Match: A0A835YQT7_9STRA (Transmembrane 9 superfamily member n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQT7_9STRA)

HSP 1 Score: 100 bits (248), Expect = 5.740e-23
Identity = 46/71 (64.79%), Postives = 57/71 (80.28%), Query Frame = 1
Query:    1 VRGDVFRAPEHLTTFSALFGTGCQLTVIVLMVILFAMAGPLHGDVYEERGELVSTFLVCYAFTSFVSGWVS 213
            V GDVFRAP HL  F+AL+GTG Q+  +V  V+LFAMAGPLHGDVYEERGE+V+T +V YA T+ V+G+ S
Sbjct:  277 VHGDVFRAPAHLMLFAALYGTGWQIATLVAGVVLFAMAGPLHGDVYEERGEMVTTVIVVYALTAAVAGYGS 347          
BLAST of mRNA_H-elongata_contig182937.4910.1 vs. uniprot
Match: W7TF26_9STRA (Transmembrane 9 superfamily member n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TF26_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.010e-22
Identity = 45/71 (63.38%), Postives = 56/71 (78.87%), Query Frame = 1
Query:    1 VRGDVFRAPEHLTTFSALFGTGCQLTVIVLMVILFAMAGPLHGDVYEERGELVSTFLVCYAFTSFVSGWVS 213
            V GDVFRAP HL  FSAL+G GCQ   +VL+V+ +A+AGPLHGDVYEERGELV++ +V YA T  V+G+ S
Sbjct:  278 VHGDVFRAPLHLMFFSALYGIGCQFLALVLVVVGWAIAGPLHGDVYEERGELVTSVIVAYALTCLVAGYTS 348          
BLAST of mRNA_H-elongata_contig182937.4910.1 vs. uniprot
Match: A0A7R9W337_9STRA (Transmembrane 9 superfamily member (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W337_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 6.510e-22
Identity = 43/71 (60.56%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 VRGDVFRAPEHLTTFSALFGTGCQLTVIVLMVILFAMAGPLHGDVYEERGELVSTFLVCYAFTSFVSGWVS 213
            V GDVFRAP HL  F+AL GTG QL V+ L VILFA+AGP+HG+V+EERGE++   +  YA +S VSG+ S
Sbjct:   82 VHGDVFRAPSHLPLFAALIGTGWQLVVLTLGVILFAVAGPIHGEVHEERGEILHAVVWIYALSSVVSGYAS 152          
BLAST of mRNA_H-elongata_contig182937.4910.1 vs. uniprot
Match: A0A448Z640_9STRA (Transmembrane 9 superfamily member n=3 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448Z640_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.410e-21
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    1 VRGDVFRAPEHLTTFSALFGTGCQLTVIVLMVILFAMAGPLHGDVYEERGELVSTFLVCYAFTSFVSGWVS 213
            V GDVFRAP  L  F+AL GTG QL V+   VILFA+ GP+HG+V+EERGE++   L+CYAF++ VSG+VS
Sbjct:  320 VHGDVFRAPSMLPLFAALVGTGSQLVVLTFGVILFAVLGPVHGEVHEERGEMMQAILICYAFSTIVSGFVS 390          
BLAST of mRNA_H-elongata_contig182937.4910.1 vs. uniprot
Match: A0A7S3M626_9STRA (Transmembrane 9 superfamily member (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M626_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.130e-20
Identity = 40/72 (55.56%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 VRGDVFRAPEHLTTFSALFGTGCQLTVIVLMVILFAMAGP-LHGDVYEERGELVSTFLVCYAFTSFVSGWVS 213
            V GDVFR PE+L  F A+ GTG QL ++VL VIL+AM GP LHG++YE+RGE++STF++C++ +S ++G+ S
Sbjct:  232 VHGDVFRPPENLELFCAIVGTGWQLVILVLFVILYAMLGPYLHGNMYEDRGEMISTFIICFSLSSAIAGYSS 303          
BLAST of mRNA_H-elongata_contig182937.4910.1 vs. uniprot
Match: A0A1E7FNJ7_9STRA (Transmembrane 9 superfamily member n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FNJ7_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.210e-20
Identity = 41/71 (57.75%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    1 VRGDVFRAPEHLTTFSALFGTGCQLTVIVLMVILFAMAGPLHGDVYEERGELVSTFLVCYAFTSFVSGWVS 213
            V GDVFRAP  L  F+AL GTG QL V+   VILFA+ GP+HG+V+EERG+++   L+CYAF++ VSG++S
Sbjct:  322 VHGDVFRAPSTLPLFAALIGTGWQLVVLTFGVILFAVLGPVHGEVHEERGKMMQAILICYAFSTIVSGYMS 392          
BLAST of mRNA_H-elongata_contig182937.4910.1 vs. uniprot
Match: A0A7S4DBZ3_HETAK (Transmembrane 9 superfamily member n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBZ3_HETAK)

HSP 1 Score: 92.4 bits (228), Expect = 2.250e-20
Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    1 VRGDVFRAPEHLTTFSALFGTGCQLTVIVLMVILFAMAGPLHGDVYEERGELVSTFLVCYAFTSFVSGWVS 213
            V GDVFRAP HL  F+AL GTG QL  +    +LFA+AGPLHGDVYEERGE+++  +V YA ++ V+G+ S
Sbjct:  126 VHGDVFRAPRHLALFAALVGTGWQLAALAAGAVLFALAGPLHGDVYEERGEMMTACIVMYALSTVVAGYAS 196          
BLAST of mRNA_H-elongata_contig182937.4910.1 vs. uniprot
Match: A0A8J9X954_PHATR (Hypothetical protein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X954_PHATR)

HSP 1 Score: 92.4 bits (228), Expect = 2.450e-20
Identity = 42/71 (59.15%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 VRGDVFRAPEHLTTFSALFGTGCQLTVIVLMVILFAMAGPLHGDVYEERGELVSTFLVCYAFTSFVSGWVS 213
            V GDVFRAP +L  F+AL GTG QL V+ L VILFA+ GP+HG V+EERGEL+   + CY+ +S V+G+VS
Sbjct:  139 VHGDVFRAPSYLPLFAALLGTGWQLVVLTLGVILFAVLGPMHGQVHEERGELLHAVIACYSLSSIVAGFVS 209          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig182937.4910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXN7_9PHAE2.540e-3178.87Transmembrane 9 superfamily member n=1 Tax=Ectocar... [more]
D8LEY0_ECTSI9.980e-3177.94Transmembrane 9 superfamily member n=1 Tax=Ectocar... [more]
A0A835YQT7_9STRA5.740e-2364.79Transmembrane 9 superfamily member n=1 Tax=Tribone... [more]
W7TF26_9STRA2.010e-2263.38Transmembrane 9 superfamily member n=2 Tax=Monodop... [more]
A0A7R9W337_9STRA6.510e-2260.56Transmembrane 9 superfamily member (Fragment) n=1 ... [more]
A0A448Z640_9STRA3.410e-2160.56Transmembrane 9 superfamily member n=3 Tax=Pseudo-... [more]
A0A7S3M626_9STRA1.130e-2055.56Transmembrane 9 superfamily member (Fragment) n=1 ... [more]
A0A1E7FNJ7_9STRA2.210e-2057.75Transmembrane 9 superfamily member n=1 Tax=Fragila... [more]
A0A7S4DBZ3_HETAK2.250e-2057.75Transmembrane 9 superfamily member n=1 Tax=Heteros... [more]
A0A8J9X954_PHATR2.450e-2059.15Hypothetical protein n=1 Tax=Phaeodactylum tricorn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig182937contigH-elongata_contig182937:959..1171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue2e-24
Seed eggNOG ortholog2880.D8LEY0
Preferred nameTM9SF3
KEGG koko:K02639,ko:K17087
KEGG Pathwayko00195,map00195
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005795,GO:0005797,GO:0005801,GO:0005802,GO:0012505,GO:0016020,GO:0016021,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0097708,GO:0098791
EggNOG free text desc.secretion of lysosomal enzymes
EggNOG OGsKOG1277@2759,KOG1278@1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194,ko04147
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionNonaspanin (TM9SF)
Ec32 orthologEc-21_005980.2
Exons1
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930051.511023-CDS-H-elongata_contig182937:958..11711622930051.511023-CDS-H-elongata_contig182937:958..1171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182937 959..1171 -
1691679261.899703-CDS-H-elongata_contig182937:958..11711691679261.899703-CDS-H-elongata_contig182937:958..1171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182937 959..1171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig182937.4910.1prot_H-elongata_contig182937.4910.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig182937 959..1171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig182937.4910.1

>prot_H-elongata_contig182937.4910.1 ID=prot_H-elongata_contig182937.4910.1|Name=mRNA_H-elongata_contig182937.4910.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
VRGDVFRAPEHLTTFSALFGTGCQLTVIVLMVILFAMAGPLHGDVYEERG
ELVSTFLVCYAFTSFVSGWVS
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mRNA from alignment at H-elongata_contig182937:959..1171-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig182937.4910.1 ID=mRNA_H-elongata_contig182937.4910.1|Name=mRNA_H-elongata_contig182937.4910.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig182937:959..1171- (Himanthalia elongata Himel1 dioecious)
GTGCGCGGGGACGTCTTTCGGGCGCCCGAGCACCTGACCACGTTTAGCGC CCTGTTCGGCACGGGGTGCCAGCTAACGGTGATCGTGCTGATGGTAATCC TGTTCGCGATGGCGGGGCCCCTGCACGGCGATGTCTACGAAGAACGAGGG GAGTTGGTGTCCACGTTCCTCGTGTGCTACGCTTTCACTTCCTTCGTCTC GGGGTGGGTTTCC
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Coding sequence (CDS) from alignment at H-elongata_contig182937:959..1171-

>mRNA_H-elongata_contig182937.4910.1 ID=mRNA_H-elongata_contig182937.4910.1|Name=mRNA_H-elongata_contig182937.4910.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig182937:959..1171- (Himanthalia elongata Himel1 dioecious)
GTGCGCGGGGACGTCTTTCGGGCGCCCGAGCACCTGACCACGTTTAGCGC
CCTGTTCGGCACGGGGTGCCAGCTAACGGTGATCGTGCTGATGGTAATCC
TGTTCGCGATGGCGGGGCCCCTGCACGGCGATGTCTACGAAGAACGAGGG
GAGTTGGTGTCCACGTTCCTCGTGTGCTACGCTTTCACTTCCTTCGTCTC
GGGGTGGGTTTCCGTGCGCGGGGACGTCTTTCGGGCGCCCGAGCACCTGA
CCACGTTTAGCGCCCTGTTCGGCACGGGGTGCCAGCTAACGGTGATCGTG
CTGATGGTAATCCTGTTCGCGATGGCGGGGCCCCTGCACGGCGATGTCTA
CGAAGAACGAGGGGAGTTGGTGTCCACGTTCCTCGTGTGCTACGCTTTCA
CTTCCTTCGTCTCGGGGTGGGTTTCC
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