mRNA_H-elongata_contig182528.4896.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 2.940e-13 Identity = 36/65 (55.38%), Postives = 51/65 (78.46%), Query Frame = 2
Query: 449 VILR*MAQISGVVSIEYPPAYEKFLAALSVINLNLGSILSLSCVFETNFYERLVLATIGPIAVLG 643
V+ + + Q S V IEYP AY+ FL+ + V+NL+LG ILS +CV++TNFY+RL++ATIGP+ VLG
Sbjct: 706 VVWQIVTQYSDVAGIEYPGAYQDFLSVVDVVNLDLGFILSFACVYDTNFYDRLLMATIGPVLVLG 770
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 4.000e-13 Identity = 35/65 (53.85%), Postives = 51/65 (78.46%), Query Frame = 2
Query: 449 VILR*MAQISGVVSIEYPPAYEKFLAALSVINLNLGSILSLSCVFETNFYERLVLATIGPIAVLG 643
V+ + + Q S V +EYP AY+ FL+ + V+NL+LG ILS +CV++TNFY+RL++ATIGP+ VLG
Sbjct: 725 VVWQIVTQYSDVAGVEYPGAYQDFLSVVDVVNLDLGFILSFACVYDTNFYDRLLMATIGPVLVLG 789
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI) HSP 1 Score: 75.5 bits (184), Expect = 2.360e-12 Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 2
Query: 464 MAQISGVVSIEYPPAYEKFLAALSVINLNLGSILSLSCVFETNFYERLVLATIGPIAVLG 643
+ Q S VV++ YP YEKFL+ L+++N N G ILS SCV +TNFY RL+ ATIGP+ VLG
Sbjct: 74 VTQFSSVVNVVYPDVYEKFLSILNLVNFNFGFILSASCVVDTNFYGRLLFATIGPLVVLG 133
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 1.490e-11 Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 2
Query: 449 VILR*MAQISGVVSIEYPPAYEKFLAALSVINLNLGSILSLSCVFETNFYERLVLATIGPIAVLG 643
V+ + + Q + VV +EYP YE+FLAAL+++N NLG LS C+ ETNFY RL +TI P+A+LG
Sbjct: 49 VVWQIVTQFASVVDVEYPEIYERFLAALNLVNFNLGYFLSFLCLVETNFYGRLAFSTIVPLAILG 113
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Match: D7FUB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB5_ECTSI) HSP 1 Score: 72.4 bits (176), Expect = 2.590e-11 Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 2
Query: 464 MAQISGVVSIEYPPAYEKFLAALSVINLNLGSILSLSCVFETNFYERLVLATIGPIAVLG 643
+ Q + VV +EYP YE+FLAAL+++N NLG LS CV ETNFY RL +T+ P+A+LG
Sbjct: 32 VTQFASVVDVEYPEIYERFLAALNLVNFNLGFFLSFLCVVETNFYGRLAFSTLLPLAILG 91
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 2.710e-11 Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 1
Query: 25 CAVCEEGFTSELQYNCHTCQVSEKWVAVCRAAAVLIVALFVVTLVVAYLVRVEDRPIFEGSGRCVRWLLDFRDMVVRAIPLTAIKIVIVTWQIITQ 312
CAVC+EG+ S Q++C C A+ + A+ VAL + LV+A LVRV D + + + L RD +V+A+PLT+IKIV+V WQI+TQ
Sbjct: 657 CAVCDEGYASGYQFSCSICDGENLRSAIGTSVALFFVALVGIALVIADLVRVVDEVEPDTASTWGKRLTSCRDRIVKAVPLTSIKIVVVAWQIVTQ 752
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Match: A0A6H5L874_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L874_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 3.270e-11 Identity = 34/65 (52.31%), Postives = 49/65 (75.38%), Query Frame = 2
Query: 449 VILR*MAQISGVVSIEYPPAYEKFLAALSVINLNLGSILSLSCVFETNFYERLVLATIGPIAVLG 643
V+ + + Q S V +EYP AY+ FL+ + V+NL+LG ILSL+CV++T+FY+RL+L TI P VLG
Sbjct: 588 VVWQIVTQYSDVAGVEYPGAYKDFLSVIDVVNLDLGFILSLACVYDTDFYDRLLLTTICPAVVLG 652
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 2.340e-10 Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 2
Query: 449 VILR*MAQISGVVSIEYPPAYEKFLAALSVINLNLGSILSLSCVFETNFYERLVLATIGPIAVLG 643
V+ + + Q S V +EYP AY+ FL+ + V+NL+LG ILSL+CV +T+FY+RL+L TI P VLG
Sbjct: 730 VVWQIVTQYSDVAGVEYPGAYKDFLSVVDVVNLDLGFILSLACVCDTDFYDRLLLTTICPAVVLG 794
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Match: D7FHV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV0_ECTSI) HSP 1 Score: 65.1 bits (157), Expect = 2.660e-9 Identity = 29/72 (40.28%), Postives = 49/72 (68.06%), Query Frame = 2
Query: 425 FYASVLRDVILR*MAQISGVVSIEYPPAYEKFLAALSVINLNLGSILSLSCVFETNFYERLVLATIGPIAVL 640
F+ + V+L+ + Q + + SIE+ P ++ FL+ +SVINL+LG +L+ C+ + NFY L+ AT+GP+ VL
Sbjct: 139 FHKLKIPFVVLQIITQYASITSIEFAPVFQTFLSTISVINLDLGWVLTSVCIIDVNFYGNLIAATVGPLMVL 210
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Match: D8LRF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF7_ECTSI) HSP 1 Score: 65.1 bits (157), Expect = 1.020e-8 Identity = 29/72 (40.28%), Postives = 49/72 (68.06%), Query Frame = 2
Query: 425 FYASVLRDVILR*MAQISGVVSIEYPPAYEKFLAALSVINLNLGSILSLSCVFETNFYERLVLATIGPIAVL 640
F+ + V+L+ + Q + + SIE+ P ++ FL+ +SVINL+LG +L+ C+ + NFY L+ AT+GP+ VL
Sbjct: 584 FHKLKIPFVVLQIITQYASITSIEFAPVFQTFLSTISVINLDLGWVLTSVCIIDVNFYGNLIAATVGPLMVL 655 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig182528.4896.1 >prot_H-elongata_contig182528.4896.1 ID=prot_H-elongata_contig182528.4896.1|Name=mRNA_H-elongata_contig182528.4896.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp MYNLFSKDCAVCEEGFTSELQYNCHTCQVSEKWVAVCRAAAVLIVALFVVback to top mRNA from alignment at H-elongata_contig182528:392..1036+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig182528.4896.1 ID=mRNA_H-elongata_contig182528.4896.1|Name=mRNA_H-elongata_contig182528.4896.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=645bp|location=Sequence derived from alignment at H-elongata_contig182528:392..1036+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig182528:392..1036+ >mRNA_H-elongata_contig182528.4896.1 ID=mRNA_H-elongata_contig182528.4896.1|Name=mRNA_H-elongata_contig182528.4896.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig182528:392..1036+ (Himanthalia elongata Himel1 dioecious)back to top |