mRNA_H-elongata_contig182527.4895.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig182527.4895.1 vs. uniprot
Match: D7FT45_ECTSI (Spermidine/spermine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT45_ECTSI) HSP 1 Score: 191 bits (484), Expect = 3.460e-58 Identity = 87/138 (63.04%), Postives = 111/138 (80.43%), Query Frame = 1
Query: 1 FVASPQEFYQFAITKLSPGGILVTQSGAAGVHLKEECFTVIHKTLQSVFKRVLPSVADIPSFASCWGFNMATDSESLTVEEHLRRDPKTTDDMISSRIVGELKHYDGITHLGMFGTPKWLRAAIKDEKRIMTKDTPVF 414
++ QEFY+FA T+LSPGG+LVTQSGAA VHLK+ECFTVIHKTL+SVF+ V SVAD+PSF CWGFN+A+DS + EE+ R++ TD I +RI G L+ YDG+TH G+FG PKWLRAA+++E+RIMT D+PVF
Sbjct: 145 YILYTQEFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFQHVSMSVADVPSFGCCWGFNLASDSSTFNTEEYRRKEVAATDSDIEARITGTLRFYDGVTHGGLFGVPKWLRAAVEEEERIMTIDSPVF 282
BLAST of mRNA_H-elongata_contig182527.4895.1 vs. uniprot
Match: A0A7S2V6Z8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6Z8_9STRA) HSP 1 Score: 136 bits (343), Expect = 1.020e-36 Identity = 65/139 (46.76%), Postives = 92/139 (66.19%), Query Frame = 1
Query: 1 FVASPQEFYQFAITKLSPGGILVTQSGAAGVHLKEECFTVIHKTLQSVFKRVLPSVADIPSFASCWGFNMATDSESLTVEEHLRRDPK-TTDDMISSRIVGELKHYDGITHLGMFGTPKWLRAAIKDEKRIMTKDTPVF 414
++ +EFY++A+T+L+PGG+LVTQSG ECFT IH TL+ F V+P IPSF W FN+A+ + + + P D+ IS RI GELK YDG++H+G+FGTPK++RAA+ +KR++TKD PVF
Sbjct: 169 YILYTEEFYKYAMTRLTPGGVLVTQSGPGSNTTHGECFTAIHNTLKQAFPTVIPYTVSIPSFGCDWAFNVASIDSGVDTQAYGVGKPMGDLDEEISKRIDGELKFYDGVSHVGIFGTPKYIRAALAADKRVITKDNPVF 307
BLAST of mRNA_H-elongata_contig182527.4895.1 vs. uniprot
Match: A0A8K1CQB7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQB7_PYTOL) HSP 1 Score: 132 bits (333), Expect = 3.830e-35 Identity = 65/140 (46.43%), Postives = 93/140 (66.43%), Query Frame = 1
Query: 1 FVASPQEFYQFAITKLSPGGILVTQSGAAGVHLKEECFTVIHKTLQSVFKRVLPSVADIPSFASCWGFNMATDSES--LTVEEHLRRDPKTTDDMISSRIVGELKHYDGITHLGMFGTPKWLRAAIKDEKRIMTKDTPVF 414
+V +EFY++A+TKL+ GG VTQSG ++ +ECF+ I+ TL++ F VLP DIPSF W FNMAT++E E + R T+ ++++RI KHYDGI+HLGMFG PK +R +++ EKR++T D PVF
Sbjct: 177 YVLYTEEFYKYAVTKLNKGGYFVTQSGPGALYNWDECFSAIYSTLKTAFNTVLPYSVDIPSFGCVWAFNMATNTEEPEKAKEAIIERRISETNALVAARISKPTKHYDGISHLGMFGLPKPIRDSVEAEKRVITVDNPVF 316
BLAST of mRNA_H-elongata_contig182527.4895.1 vs. uniprot
Match: A0A2D4BNJ7_PYTIN (Spermidine synthase n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNJ7_PYTIN) HSP 1 Score: 130 bits (328), Expect = 2.720e-34 Identity = 64/140 (45.71%), Postives = 93/140 (66.43%), Query Frame = 1
Query: 1 FVASPQEFYQFAITKLSPGGILVTQSGAAGVHLKEECFTVIHKTLQSVFKRVLPSVADIPSFASCWGFNMATDS-ESLTVEEHLRRDP-KTTDDMISSRIVGELKHYDGITHLGMFGTPKWLRAAIKDEKRIMTKDTPVF 414
+V +EFY++A+TKL+ GG VTQSG ++ +ECF+ IH TL++ F VLP DIPSF W FN+AT++ ++ +R+ P TD ++ +RI LKHYDG++HLG+FG PK +R A+ E R++T D PVF
Sbjct: 189 YVLYTEEFYKYAVTKLNAGGFFVTQSGPGALYNWDECFSAIHSTLKTAFNTVLPYTVDIPSFGCQWAFNLATNATDAAATGVAIRQRPIAETDALVKARINKPLKHYDGLSHLGLFGVPKPIRDALDAETRVITVDNPVF 328
BLAST of mRNA_H-elongata_contig182527.4895.1 vs. uniprot
Match: A0A836C836_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C836_9STRA) HSP 1 Score: 131 bits (329), Expect = 3.420e-34 Identity = 67/147 (45.58%), Postives = 91/147 (61.90%), Query Frame = 1
Query: 1 FVASPQEFYQFAITKLSPGGILVTQSGAAGVHLKEECFTVIHKTLQSVFKRVLPSVADIPSFASCWGFNMATDSESLTVEEH--LRRDPKTTDDMISSRIVG-------ELKHYDGITHLGMFGTPKWLRAAIKDEKRIMTKDTPVF 414
+V +EFY++A T+L+ GGI+VTQSG ++ EECFTVIH+TL S FK +P D+PSF W F +A ++ + + + TD I++RI G L+ YDG HLGMFGTPKWLR A+ E+R+MT D PVF
Sbjct: 211 YVLYTEEFYRYATTQLAEGGIIVTQSGPGSLNTHEECFTVIHRTLASAFKHAVPYTVDVPSFGCTWAFTLAFNACAGAADAAAVVEMSVAATDAAIAARIGGGGSSGSSALRFYDGAAHLGMFGTPKWLRRALDAERRVMTVDNPVF 357
BLAST of mRNA_H-elongata_contig182527.4895.1 vs. uniprot
Match: A0A7S4ED28_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ED28_9STRA) HSP 1 Score: 129 bits (324), Expect = 8.470e-34 Identity = 66/133 (49.62%), Postives = 84/133 (63.16%), Query Frame = 1
Query: 16 QEFYQFAITKLSPGGILVTQSGAAGVHLKEECFTVIHKTLQSVFKRVLPSVADIPSFASCWGFNMATDSESLTVEEHLRRDPKTTDDMISSRIVGELKHYDGITHLGMFGTPKWLRAAIKDEKRIMTKDTPVF 414
+EFY KL+PGG+LVTQSG AG+ ECF IHKTL + F+ V+P IPSF S WGFN+ATD +T + + P TD IS RI G L+HYDG THL MF K +R ++ E R++T+ PVF
Sbjct: 185 KEFYDLVRQKLNPGGVLVTQSGPAGLMNHTECFGAIHKTLAASFRTVVPYSVSIPSFGSDWGFNVATDRGDITSKSLREKPPDATDAAISGRIRGPLRHYDGGTHLCMFNLIKAVRDGVEAEDRVITEANPVF 317
BLAST of mRNA_H-elongata_contig182527.4895.1 vs. uniprot
Match: A0A2N0KH18_9CHLR (Polyamine aminopropyltransferase n=1 Tax=SAR202 cluster bacterium Casp-Chloro-G3 TaxID=1926605 RepID=A0A2N0KH18_9CHLR) HSP 1 Score: 121 bits (304), Expect = 5.840e-31 Identity = 60/132 (45.45%), Postives = 86/132 (65.15%), Query Frame = 1
Query: 19 EFYQFAITKLSPGGILVTQSGAAGVHLKEECFTVIHKTLQSVFKRVLPSVADIPSFASCWGFNMATDSESLTVEEHLRRDPKTTDDMISSRIVGELKHYDGITHLGMFGTPKWLRAAIKDEKRIMTKDTPVF 414
++Y+ A +KL+PGGILVTQSG AG+ +ECFT IH TLQ VF V IP+F + WGFN+A+D+E ++E P+ D +I+ R+ LK YDG +H MF PK+LR ++++E R+ + PVF
Sbjct: 177 QYYRIAKSKLNPGGILVTQSGPAGLLAHQECFTTIHNTLQGVFNNVRGCQVHIPAFQTLWGFNIASDAELPKLDE-----PEKLDGLIAQRVNKPLKFYDGESHTNMFSLPKFLRQSMQNENRVNRDEAPVF 303
BLAST of mRNA_H-elongata_contig182527.4895.1 vs. uniprot
Match: A0A2R5GUG4_9STRA (Spermidine synthase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GUG4_9STRA) HSP 1 Score: 122 bits (305), Expect = 8.980e-31 Identity = 66/140 (47.14%), Postives = 85/140 (60.71%), Query Frame = 1
Query: 16 QEFYQFAITKLSPGGILVTQSGAAGVHLKEECFTVIHKTLQSVFKRVLPSVADIPSFASCWGFNMA-TDSESLTVEEHLRRDPKTTDDMISSRIVG------ELKHYDGITHLGMFGTPKWLRAAIKDEKRIMTKDTPVF 414
QEFYQ+A +KL+P G+LVTQSGA ++ EECFT IH TL++ F VL DIPSFA CWGFN+A D E + P+ DD I+ R+ + YDG+TH G+FG PK +R + E RI+T PVF
Sbjct: 204 QEFYQYAASKLNPHGVLVTQSGACSLYNFEECFTAIHNTLKASFDSVLGYRVDIPSFAGCWGFNIAFNDPEKDSRGTFADWAPEKIDDRIAERLAAGSSTARSFRFYDGVTHRGLFGLPKPMRDGMAREDRIITVKNPVF 343
BLAST of mRNA_H-elongata_contig182527.4895.1 vs. uniprot
Match: A0A7C7IB22_9CHLR (Polyamine aminopropyltransferase n=3 Tax=Chloroflexi TaxID=200795 RepID=A0A7C7IB22_9CHLR) HSP 1 Score: 118 bits (296), Expect = 8.570e-30 Identity = 60/133 (45.11%), Postives = 81/133 (60.90%), Query Frame = 1
Query: 16 QEFYQFAITKLSPGGILVTQSGAAGVHLKEECFTVIHKTLQSVFKRVLPSVADIPSFASCWGFNMATDSESLTVEEHLRRDPKTTDDMISSRIVGELKHYDGITHLGMFGTPKWLRAAIKDEKRIMTKDTPVF 414
+E+YQ ++L+PGGI+VTQSG AG+ +ECFT IH TL VF RV+PS +P+F + WG +A+DS + D D I+ R+ EL+ YDG TH MF PK+LR +K+E RI PVF
Sbjct: 175 EEYYQIVKSRLNPGGIMVTQSGPAGLLSYQECFTTIHNTLSGVFDRVIPSHVHVPAFQTMWGMILASDSPLDQL------DSDQVDTRIAERVTKELRFYDGETHRNMFALPKYLRKGLKEESRINRDANPVF 301
BLAST of mRNA_H-elongata_contig182527.4895.1 vs. uniprot
Match: A0A836VKN5_9PROT (Spermidine synthase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A836VKN5_9PROT) HSP 1 Score: 114 bits (286), Expect = 1.620e-29 Identity = 57/133 (42.86%), Postives = 82/133 (61.65%), Query Frame = 1
Query: 16 QEFYQFAITKLSPGGILVTQSGAAGVHLKEECFTVIHKTLQSVFKRVLPSVADIPSFASCWGFNMATDSESLTVEEHLRRDPKTTDDMISSRIVGELKHYDGITHLGMFGTPKWLRAAIKDEKRIMTKDTPVF 414
+EFY+ +KL+PGGI+VTQSGA G+ +ECFT I TL +FK + A +P+F + W F +A+DS +E D ++ R+ +LK+YDG +H MF PK+LR I++EKRI D+PVF
Sbjct: 56 EEFYRIVKSKLNPGGIIVTQSGAVGLLNYQECFTTIFNTLSGIFKHTASAQAHVPAFQTLWSFTLASDSPLNFPDE------AGIDGILKERVAKQLKYYDGESHRSMFALPKFLRQGIQEEKRINRDDSPVF 182 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig182527.4895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig182527.4895.1 >prot_H-elongata_contig182527.4895.1 ID=prot_H-elongata_contig182527.4895.1|Name=mRNA_H-elongata_contig182527.4895.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp FVASPQEFYQFAITKLSPGGILVTQSGAAGVHLKEECFTVIHKTLQSVFKback to top mRNA from alignment at H-elongata_contig182527:123..821+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig182527.4895.1 ID=mRNA_H-elongata_contig182527.4895.1|Name=mRNA_H-elongata_contig182527.4895.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=699bp|location=Sequence derived from alignment at H-elongata_contig182527:123..821+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig182527:123..821+ >mRNA_H-elongata_contig182527.4895.1 ID=mRNA_H-elongata_contig182527.4895.1|Name=mRNA_H-elongata_contig182527.4895.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig182527:123..821+ (Himanthalia elongata Himel1 dioecious)back to top |