mRNA_H-elongata_contig182527.4895.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig182527.4895.1
Unique NamemRNA_H-elongata_contig182527.4895.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig182527.4895.1 vs. uniprot
Match: D7FT45_ECTSI (Spermidine/spermine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT45_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 3.460e-58
Identity = 87/138 (63.04%), Postives = 111/138 (80.43%), Query Frame = 1
Query:    1 FVASPQEFYQFAITKLSPGGILVTQSGAAGVHLKEECFTVIHKTLQSVFKRVLPSVADIPSFASCWGFNMATDSESLTVEEHLRRDPKTTDDMISSRIVGELKHYDGITHLGMFGTPKWLRAAIKDEKRIMTKDTPVF 414
            ++   QEFY+FA T+LSPGG+LVTQSGAA VHLK+ECFTVIHKTL+SVF+ V  SVAD+PSF  CWGFN+A+DS +   EE+ R++   TD  I +RI G L+ YDG+TH G+FG PKWLRAA+++E+RIMT D+PVF
Sbjct:  145 YILYTQEFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFQHVSMSVADVPSFGCCWGFNLASDSSTFNTEEYRRKEVAATDSDIEARITGTLRFYDGVTHGGLFGVPKWLRAAVEEEERIMTIDSPVF 282          
BLAST of mRNA_H-elongata_contig182527.4895.1 vs. uniprot
Match: A0A7S2V6Z8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6Z8_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.020e-36
Identity = 65/139 (46.76%), Postives = 92/139 (66.19%), Query Frame = 1
Query:    1 FVASPQEFYQFAITKLSPGGILVTQSGAAGVHLKEECFTVIHKTLQSVFKRVLPSVADIPSFASCWGFNMATDSESLTVEEHLRRDPK-TTDDMISSRIVGELKHYDGITHLGMFGTPKWLRAAIKDEKRIMTKDTPVF 414
            ++   +EFY++A+T+L+PGG+LVTQSG        ECFT IH TL+  F  V+P    IPSF   W FN+A+    +  + +    P    D+ IS RI GELK YDG++H+G+FGTPK++RAA+  +KR++TKD PVF
Sbjct:  169 YILYTEEFYKYAMTRLTPGGVLVTQSGPGSNTTHGECFTAIHNTLKQAFPTVIPYTVSIPSFGCDWAFNVASIDSGVDTQAYGVGKPMGDLDEEISKRIDGELKFYDGVSHVGIFGTPKYIRAALAADKRVITKDNPVF 307          
BLAST of mRNA_H-elongata_contig182527.4895.1 vs. uniprot
Match: A0A8K1CQB7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQB7_PYTOL)

HSP 1 Score: 132 bits (333), Expect = 3.830e-35
Identity = 65/140 (46.43%), Postives = 93/140 (66.43%), Query Frame = 1
Query:    1 FVASPQEFYQFAITKLSPGGILVTQSGAAGVHLKEECFTVIHKTLQSVFKRVLPSVADIPSFASCWGFNMATDSES--LTVEEHLRRDPKTTDDMISSRIVGELKHYDGITHLGMFGTPKWLRAAIKDEKRIMTKDTPVF 414
            +V   +EFY++A+TKL+ GG  VTQSG   ++  +ECF+ I+ TL++ F  VLP   DIPSF   W FNMAT++E      E  + R    T+ ++++RI    KHYDGI+HLGMFG PK +R +++ EKR++T D PVF
Sbjct:  177 YVLYTEEFYKYAVTKLNKGGYFVTQSGPGALYNWDECFSAIYSTLKTAFNTVLPYSVDIPSFGCVWAFNMATNTEEPEKAKEAIIERRISETNALVAARISKPTKHYDGISHLGMFGLPKPIRDSVEAEKRVITVDNPVF 316          
BLAST of mRNA_H-elongata_contig182527.4895.1 vs. uniprot
Match: A0A2D4BNJ7_PYTIN (Spermidine synthase n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNJ7_PYTIN)

HSP 1 Score: 130 bits (328), Expect = 2.720e-34
Identity = 64/140 (45.71%), Postives = 93/140 (66.43%), Query Frame = 1
Query:    1 FVASPQEFYQFAITKLSPGGILVTQSGAAGVHLKEECFTVIHKTLQSVFKRVLPSVADIPSFASCWGFNMATDS-ESLTVEEHLRRDP-KTTDDMISSRIVGELKHYDGITHLGMFGTPKWLRAAIKDEKRIMTKDTPVF 414
            +V   +EFY++A+TKL+ GG  VTQSG   ++  +ECF+ IH TL++ F  VLP   DIPSF   W FN+AT++ ++      +R+ P   TD ++ +RI   LKHYDG++HLG+FG PK +R A+  E R++T D PVF
Sbjct:  189 YVLYTEEFYKYAVTKLNAGGFFVTQSGPGALYNWDECFSAIHSTLKTAFNTVLPYTVDIPSFGCQWAFNLATNATDAAATGVAIRQRPIAETDALVKARINKPLKHYDGLSHLGLFGVPKPIRDALDAETRVITVDNPVF 328          
BLAST of mRNA_H-elongata_contig182527.4895.1 vs. uniprot
Match: A0A836C836_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C836_9STRA)

HSP 1 Score: 131 bits (329), Expect = 3.420e-34
Identity = 67/147 (45.58%), Postives = 91/147 (61.90%), Query Frame = 1
Query:    1 FVASPQEFYQFAITKLSPGGILVTQSGAAGVHLKEECFTVIHKTLQSVFKRVLPSVADIPSFASCWGFNMATDSESLTVEEH--LRRDPKTTDDMISSRIVG-------ELKHYDGITHLGMFGTPKWLRAAIKDEKRIMTKDTPVF 414
            +V   +EFY++A T+L+ GGI+VTQSG   ++  EECFTVIH+TL S FK  +P   D+PSF   W F +A ++ +   +    +      TD  I++RI G        L+ YDG  HLGMFGTPKWLR A+  E+R+MT D PVF
Sbjct:  211 YVLYTEEFYRYATTQLAEGGIIVTQSGPGSLNTHEECFTVIHRTLASAFKHAVPYTVDVPSFGCTWAFTLAFNACAGAADAAAVVEMSVAATDAAIAARIGGGGSSGSSALRFYDGAAHLGMFGTPKWLRRALDAERRVMTVDNPVF 357          
BLAST of mRNA_H-elongata_contig182527.4895.1 vs. uniprot
Match: A0A7S4ED28_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ED28_9STRA)

HSP 1 Score: 129 bits (324), Expect = 8.470e-34
Identity = 66/133 (49.62%), Postives = 84/133 (63.16%), Query Frame = 1
Query:   16 QEFYQFAITKLSPGGILVTQSGAAGVHLKEECFTVIHKTLQSVFKRVLPSVADIPSFASCWGFNMATDSESLTVEEHLRRDPKTTDDMISSRIVGELKHYDGITHLGMFGTPKWLRAAIKDEKRIMTKDTPVF 414
            +EFY     KL+PGG+LVTQSG AG+    ECF  IHKTL + F+ V+P    IPSF S WGFN+ATD   +T +    + P  TD  IS RI G L+HYDG THL MF   K +R  ++ E R++T+  PVF
Sbjct:  185 KEFYDLVRQKLNPGGVLVTQSGPAGLMNHTECFGAIHKTLAASFRTVVPYSVSIPSFGSDWGFNVATDRGDITSKSLREKPPDATDAAISGRIRGPLRHYDGGTHLCMFNLIKAVRDGVEAEDRVITEANPVF 317          
BLAST of mRNA_H-elongata_contig182527.4895.1 vs. uniprot
Match: A0A2N0KH18_9CHLR (Polyamine aminopropyltransferase n=1 Tax=SAR202 cluster bacterium Casp-Chloro-G3 TaxID=1926605 RepID=A0A2N0KH18_9CHLR)

HSP 1 Score: 121 bits (304), Expect = 5.840e-31
Identity = 60/132 (45.45%), Postives = 86/132 (65.15%), Query Frame = 1
Query:   19 EFYQFAITKLSPGGILVTQSGAAGVHLKEECFTVIHKTLQSVFKRVLPSVADIPSFASCWGFNMATDSESLTVEEHLRRDPKTTDDMISSRIVGELKHYDGITHLGMFGTPKWLRAAIKDEKRIMTKDTPVF 414
            ++Y+ A +KL+PGGILVTQSG AG+   +ECFT IH TLQ VF  V      IP+F + WGFN+A+D+E   ++E     P+  D +I+ R+   LK YDG +H  MF  PK+LR ++++E R+   + PVF
Sbjct:  177 QYYRIAKSKLNPGGILVTQSGPAGLLAHQECFTTIHNTLQGVFNNVRGCQVHIPAFQTLWGFNIASDAELPKLDE-----PEKLDGLIAQRVNKPLKFYDGESHTNMFSLPKFLRQSMQNENRVNRDEAPVF 303          
BLAST of mRNA_H-elongata_contig182527.4895.1 vs. uniprot
Match: A0A2R5GUG4_9STRA (Spermidine synthase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GUG4_9STRA)

HSP 1 Score: 122 bits (305), Expect = 8.980e-31
Identity = 66/140 (47.14%), Postives = 85/140 (60.71%), Query Frame = 1
Query:   16 QEFYQFAITKLSPGGILVTQSGAAGVHLKEECFTVIHKTLQSVFKRVLPSVADIPSFASCWGFNMA-TDSESLTVEEHLRRDPKTTDDMISSRIVG------ELKHYDGITHLGMFGTPKWLRAAIKDEKRIMTKDTPVF 414
            QEFYQ+A +KL+P G+LVTQSGA  ++  EECFT IH TL++ F  VL    DIPSFA CWGFN+A  D E  +        P+  DD I+ R+          + YDG+TH G+FG PK +R  +  E RI+T   PVF
Sbjct:  204 QEFYQYAASKLNPHGVLVTQSGACSLYNFEECFTAIHNTLKASFDSVLGYRVDIPSFAGCWGFNIAFNDPEKDSRGTFADWAPEKIDDRIAERLAAGSSTARSFRFYDGVTHRGLFGLPKPMRDGMAREDRIITVKNPVF 343          
BLAST of mRNA_H-elongata_contig182527.4895.1 vs. uniprot
Match: A0A7C7IB22_9CHLR (Polyamine aminopropyltransferase n=3 Tax=Chloroflexi TaxID=200795 RepID=A0A7C7IB22_9CHLR)

HSP 1 Score: 118 bits (296), Expect = 8.570e-30
Identity = 60/133 (45.11%), Postives = 81/133 (60.90%), Query Frame = 1
Query:   16 QEFYQFAITKLSPGGILVTQSGAAGVHLKEECFTVIHKTLQSVFKRVLPSVADIPSFASCWGFNMATDSESLTVEEHLRRDPKTTDDMISSRIVGELKHYDGITHLGMFGTPKWLRAAIKDEKRIMTKDTPVF 414
            +E+YQ   ++L+PGGI+VTQSG AG+   +ECFT IH TL  VF RV+PS   +P+F + WG  +A+DS    +      D    D  I+ R+  EL+ YDG TH  MF  PK+LR  +K+E RI     PVF
Sbjct:  175 EEYYQIVKSRLNPGGIMVTQSGPAGLLSYQECFTTIHNTLSGVFDRVIPSHVHVPAFQTMWGMILASDSPLDQL------DSDQVDTRIAERVTKELRFYDGETHRNMFALPKYLRKGLKEESRINRDANPVF 301          
BLAST of mRNA_H-elongata_contig182527.4895.1 vs. uniprot
Match: A0A836VKN5_9PROT (Spermidine synthase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A836VKN5_9PROT)

HSP 1 Score: 114 bits (286), Expect = 1.620e-29
Identity = 57/133 (42.86%), Postives = 82/133 (61.65%), Query Frame = 1
Query:   16 QEFYQFAITKLSPGGILVTQSGAAGVHLKEECFTVIHKTLQSVFKRVLPSVADIPSFASCWGFNMATDSESLTVEEHLRRDPKTTDDMISSRIVGELKHYDGITHLGMFGTPKWLRAAIKDEKRIMTKDTPVF 414
            +EFY+   +KL+PGGI+VTQSGA G+   +ECFT I  TL  +FK    + A +P+F + W F +A+DS     +E         D ++  R+  +LK+YDG +H  MF  PK+LR  I++EKRI   D+PVF
Sbjct:   56 EEFYRIVKSKLNPGGIIVTQSGAVGLLNYQECFTTIFNTLSGIFKHTASAQAHVPAFQTLWSFTLASDSPLNFPDE------AGIDGILKERVAKQLKYYDGESHRSMFALPKFLRQGIQEEKRINRDDSPVF 182          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig182527.4895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT45_ECTSI3.460e-5863.04Spermidine/spermine synthase n=1 Tax=Ectocarpus si... [more]
A0A7S2V6Z8_9STRA1.020e-3646.76Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8K1CQB7_PYTOL3.830e-3546.43Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BNJ7_PYTIN2.720e-3445.71Spermidine synthase n=2 Tax=Pythium insidiosum Tax... [more]
A0A836C836_9STRA3.420e-3445.58S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S4ED28_9STRA8.470e-3449.62Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2N0KH18_9CHLR5.840e-3145.45Polyamine aminopropyltransferase n=1 Tax=SAR202 cl... [more]
A0A2R5GUG4_9STRA8.980e-3147.14Spermidine synthase n=1 Tax=Hondaea fermentalgiana... [more]
A0A7C7IB22_9CHLR8.570e-3045.11Polyamine aminopropyltransferase n=3 Tax=Chlorofle... [more]
A0A836VKN5_9PROT1.620e-2942.86Spermidine synthase n=1 Tax=Alphaproteobacteria ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig182527contigH-elongata_contig182527:123..821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.0
Seed ortholog evalue9.6e-47
Seed eggNOG ortholog2880.D7FT45
Preferred nameSPS1
KEGG koko:K18787
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0008150,GO:0009888,GO:0009914,GO:0009926,GO:0009987,GO:0010087,GO:0010089,GO:0010487,GO:0010817,GO:0016740,GO:0016765,GO:0016768,GO:0030154,GO:0032502,GO:0044424,GO:0044464,GO:0048759,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0060918,GO:0065007,GO:0065008,GO:1905177
EggNOG free text desc.spermidine synthase activity
EggNOG OGsCOG0421@1,KOG1562@2759
EC2.5.1.79
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size420
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930050.1947584-CDS-H-elongata_contig182527:122..3621622930050.1947584-CDS-H-elongata_contig182527:122..362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182527 123..362 +
1691679261.3509862-CDS-H-elongata_contig182527:122..3621691679261.3509862-CDS-H-elongata_contig182527:122..362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182527 123..362 +
1622930050.2104185-CDS-H-elongata_contig182527:641..8211622930050.2104185-CDS-H-elongata_contig182527:641..821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182527 642..821 +
1691679261.3620672-CDS-H-elongata_contig182527:641..8211691679261.3620672-CDS-H-elongata_contig182527:641..821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182527 642..821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig182527.4895.1prot_H-elongata_contig182527.4895.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig182527 123..821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig182527.4895.1

>prot_H-elongata_contig182527.4895.1 ID=prot_H-elongata_contig182527.4895.1|Name=mRNA_H-elongata_contig182527.4895.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp
FVASPQEFYQFAITKLSPGGILVTQSGAAGVHLKEECFTVIHKTLQSVFK
RVLPSVADIPSFASCWGFNMATDSESLTVEEHLRRDPKTTDDMISSRIVG
ELKHYDGITHLGMFGTPKWLRAAIKDEKRIMTKDTPVFT*
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mRNA from alignment at H-elongata_contig182527:123..821+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig182527.4895.1 ID=mRNA_H-elongata_contig182527.4895.1|Name=mRNA_H-elongata_contig182527.4895.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=699bp|location=Sequence derived from alignment at H-elongata_contig182527:123..821+ (Himanthalia elongata Himel1 dioecious)
TTTGTTGCATCCCCTCAGGAGTTCTACCAGTTCGCGATAACGAAGCTTTC TCCAGGCGGGATACTCGTGACGCAGTCCGGCGCCGCGGGCGTGCATCTTA AAGAAGAGTGCTTCACCGTGATCCACAAGACGCTGCAATCGGTTTTCAAG AGGGTCTTGCCCTCGGTGGCAGACATTCCGTCGTTCGCGTCTTGTTGGGG GTTCAACATGGCTACCGACTCGGAAAGCTTAACAGTCGAGGTAAGAGGCA AGTCGGACGCCTAGTTTCTCGTTGACACGAGTTACAGGGTGATATCGTGT GATGCTGCTGCGTGCAAAAATACTTGCATGAACTTTTGAGTAGGTTCGTC CGCGTTTCACAGGCGGTCTTCCGGCGTTGTGTTATTCCCAAGTCGAGGCC TGCGGGCCTGGCCTGATCCTTCTTGGCCTTACGTAGAAATCTTAAGTTGA AGTCATTGTCTCTCCTGTCGCGTTACGAGTCCCTCTCGGTTTTCTTTTGC GACACTCTTAACCCCGTAGGAGCATCTTCGGAGAGACCCGAAAACCACCG ACGACATGATTTCATCGCGAATCGTGGGGGAACTTAAGCATTACGACGGA ATAACACACCTCGGCATGTTTGGGACGCCGAAGTGGCTCCGAGCGGCTAT CAAGGATGAGAAACGTATCATGACGAAAGACACCCCGGTATTCACGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig182527:123..821+

>mRNA_H-elongata_contig182527.4895.1 ID=mRNA_H-elongata_contig182527.4895.1|Name=mRNA_H-elongata_contig182527.4895.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig182527:123..821+ (Himanthalia elongata Himel1 dioecious)
TTTGTTGCATCCCCTCAGGAGTTCTACCAGTTCGCGATAACGAAGCTTTC
TCCAGGCGGGATACTCGTGACGCAGTCCGGCGCCGCGGGCGTGCATCTTA
AAGAAGAGTGCTTCACCGTGATCCACAAGACGCTGCAATCGGTTTTCAAG
AGGGTCTTGCCCTCGGTGGCAGACATTCCGTCGTTCGCGTCTTGTTGGGG
GTTCAACATGGCTACCGACTCGGAAAGCTTAACAGTCGAGTTTGTTGCAT
CCCCTCAGGAGTTCTACCAGTTCGCGATAACGAAGCTTTCTCCAGGCGGG
ATACTCGTGACGCAGTCCGGCGCCGCGGGCGTGCATCTTAAAGAAGAGTG
CTTCACCGTGATCCACAAGACGCTGCAATCGGTTTTCAAGAGGGTCTTGC
CCTCGGTGGCAGACATTCCGTCGTTCGCGTCTTGTTGGGGGTTCAACATG
GCTACCGACTCGGAAAGCTTAACAGTCGAGGAGCATCTTCGGAGAGACCC
GAAAACCACCGACGACATGATTTCATCGCGAATCGTGGGGGAACTTAAGC
ATTACGACGGAATAACACACCTCGGCATGTTTGGGACGCCGAAGTGGCTC
CGAGCGGCTATCAAGGATGAGAAACGTATCATGACGAAAGACACCCCGGT
ATTCACGTAGGAGCATCTTCGGAGAGACCCGAAAACCACCGACGACATGA
TTTCATCGCGAATCGTGGGGGAACTTAAGCATTACGACGGAATAACACAC
CTCGGCATGTTTGGGACGCCGAAGTGGCTCCGAGCGGCTATCAAGGATGA
GAAACGTATCATGACGAAAGACACCCCGGTATTCACGTAG
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