mRNA_H-elongata_contig182292.4888.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig182292.4888.1
Unique NamemRNA_H-elongata_contig182292.4888.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig182292.4888.1 vs. uniprot
Match: D7G373_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G373_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 4.000e-15
Identity = 38/47 (80.85%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 VCVMTTEVFRNMLYDERGDKEAGALQDVFAVVFDEFHYMNDRDRGTV 141
            V VMTTEVFRNMLYD    +E G L DVFAVVFDEFHYMNDRDRGTV
Sbjct:  467 VAVMTTEVFRNMLYDS---EETGELDDVFAVVFDEFHYMNDRDRGTV 510
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BLAST of mRNA_H-elongata_contig182292.4888.1 vs. uniprot
Match: A0A6H5L357_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L357_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 4.640e-15
Identity = 38/47 (80.85%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 VCVMTTEVFRNMLYDERGDKEAGALQDVFAVVFDEFHYMNDRDRGTV 141
            V VMTTEVFRNMLYD    +E G L DVFAVVFDEFHYMNDRDRGTV
Sbjct:  125 VAVMTTEVFRNMLYDS---EETGDLDDVFAVVFDEFHYMNDRDRGTV 168
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BLAST of mRNA_H-elongata_contig182292.4888.1 vs. uniprot
Match: A0A835Z819_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z819_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.860e-14
Identity = 40/57 (70.18%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 VCVMTTEVFRNMLYDER----GDKEAGA------LQDVFAVVFDEFHYMNDRDRGTV 141
            VCVMTTEVFRNMLYD      G + A A      L+DVFAVVFDEFHYMNDRDRGTV
Sbjct:  209 VCVMTTEVFRNMLYDSAAGIVGGEGAAATLGPDELKDVFAVVFDEFHYMNDRDRGTV 265
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BLAST of mRNA_H-elongata_contig182292.4888.1 vs. uniprot
Match: A0A7S4DB23_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB23_HETAK)

HSP 1 Score: 69.3 bits (168), Expect = 1.500e-13
Identity = 35/47 (74.47%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 VCVMTTEVFRNMLYDERGDKEAGALQDVFAVVFDEFHYMNDRDRGTV 141
            VCVMTTEVFRNMLY+E        L DVFAVVFDEFHYMND  RGTV
Sbjct:   86 VCVMTTEVFRNMLYEEED------LLDVFAVVFDEFHYMNDPSRGTV 126
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BLAST of mRNA_H-elongata_contig182292.4888.1 vs. uniprot
Match: A0A7S0QGM8_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QGM8_9CRYP)

HSP 1 Score: 68.6 bits (166), Expect = 1.820e-12
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 VCVMTTEVFRNMLYDERGDKEAGALQDVFAVVFDEFHYMNDRDRGTV 141
            V V+TTEV+RNMLYD    KE+G + DV +V+ DEFHYMNDRDRGTV
Sbjct:  122 VIVLTTEVYRNMLYD----KESGTVSDVHSVILDEFHYMNDRDRGTV 164
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BLAST of mRNA_H-elongata_contig182292.4888.1 vs. uniprot
Match: F0YPB7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YPB7_AURAN)

HSP 1 Score: 69.3 bits (168), Expect = 1.880e-12
Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 VCVMTTEVFRNMLYDERGDKEAGALQDVFAVVFDEFHYMNDRDRGTV 141
            V VMTTEVFRNM+YD+ G  E    +DVFAVVFDEFHYMND  RGTV
Sbjct:   91 VVVMTTEVFRNMIYDDEGRAEIA--KDVFAVVFDEFHYMNDAQRGTV 135
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BLAST of mRNA_H-elongata_contig182292.4888.1 vs. uniprot
Match: F0YDH3_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDH3_AURAN)

HSP 1 Score: 69.3 bits (168), Expect = 2.040e-12
Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 VCVMTTEVFRNMLYDERGDKEAGALQDVFAVVFDEFHYMNDRDRGTV 141
            V VMTTEVFRNM+YD+ G  E    +DVFAVVFDEFHYMND  RGTV
Sbjct:  163 VVVMTTEVFRNMIYDDEGRAEIA--KDVFAVVFDEFHYMNDAQRGTV 207
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BLAST of mRNA_H-elongata_contig182292.4888.1 vs. uniprot
Match: A0A7S1HGB1_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HGB1_HEMAN)

HSP 1 Score: 65.1 bits (157), Expect = 1.030e-11
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 VCVMTTEVFRNMLYDERGDKEAGALQDVFAVVFDEFHYMNDRDRGTV 141
            V V+TTEV+RNMLYD    K++ A++DV +V+ DEFHYMNDR+RGTV
Sbjct:   70 VLVLTTEVYRNMLYD----KDSDAVRDVHSVILDEFHYMNDRERGTV 112
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BLAST of mRNA_H-elongata_contig182292.4888.1 vs. uniprot
Match: A0A7S0YW95_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YW95_9CRYP)

HSP 1 Score: 65.1 bits (157), Expect = 2.460e-11
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 VCVMTTEVFRNMLYDERGDKEAGALQDVFAVVFDEFHYMNDRDRGTV 141
            V V+TTEV+RNMLYD    K++ A++DV +V+ DEFHYMNDR+RGTV
Sbjct:   95 VLVLTTEVYRNMLYD----KDSDAVRDVHSVILDEFHYMNDRERGTV 137
[Close]
BLAST of mRNA_H-elongata_contig182292.4888.1 vs. uniprot
Match: A0A5J4YX50_PORPP (DExH-box ATP-dependent RNA helicase DExH15 chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YX50_PORPP)

HSP 1 Score: 65.5 bits (158), Expect = 4.680e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 VCVMTTEVFRNMLYD-ERGDKEAG------ALQDVFAVVFDEFHYMNDRDRGTV 141
            V VMTTE++RNMLY  E GD   G       + DVFAVVFDEFHYMND++RGTV
Sbjct:  238 VIVMTTEIYRNMLYAAESGDMVGGIQGAMGVVDDVFAVVFDEFHYMNDKERGTV 291
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig182292.4888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G373_ECTSI4.000e-1580.85DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5L357_9PHAE4.640e-1580.85Helicase ATP-binding domain-containing protein n=1... [more]
A0A835Z819_9STRA4.860e-1470.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4DB23_HETAK1.500e-1374.47Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0QGM8_9CRYP1.820e-1268.09Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
F0YPB7_AURAN1.880e-1272.34Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
F0YDH3_AURAN2.040e-1272.34Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S1HGB1_HEMAN1.030e-1163.83Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0YW95_9CRYP2.460e-1163.83Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A5J4YX50_PORPP4.680e-1162.96DExH-box ATP-dependent RNA helicase DExH15 chlorop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig182292contigH-elongata_contig182292:469..633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue2.4e-11
Seed eggNOG ortholog2880.D7G373
KEGG koko:K12599
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
GOsGO:0000003,GO:0000373,GO:0000375,GO:0000377,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0007275,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009892,GO:0009987,GO:0010154,GO:0010467,GO:0010468,GO:0010494,GO:0010496,GO:0010497,GO:0010501,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0040029,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048519,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0051179,GO:0051234,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay
EggNOG OGsCOG4581@1,KOG0947@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size156
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930049.2262037-UTR-H-elongata_contig182292:468..4771622930049.2262037-UTR-H-elongata_contig182292:468..477Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig182292 469..477 +
1691679261.0979931-UTR-H-elongata_contig182292:468..4771691679261.0979931-UTR-H-elongata_contig182292:468..477Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig182292 469..477 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930049.2367086-CDS-H-elongata_contig182292:477..6331622930049.2367086-CDS-H-elongata_contig182292:477..633Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182292 478..633 +
1691679261.1111453-CDS-H-elongata_contig182292:477..6331691679261.1111453-CDS-H-elongata_contig182292:477..633Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182292 478..633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig182292.4888.1prot_H-elongata_contig182292.4888.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig182292 478..633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig182292.4888.1

>prot_H-elongata_contig182292.4888.1 ID=prot_H-elongata_contig182292.4888.1|Name=mRNA_H-elongata_contig182292.4888.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MTTEVFRNMLYDERGDKEAGALQDVFAVVFDEFHYMNDRDRGTVRRTHIC
R*
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mRNA from alignment at H-elongata_contig182292:469..633+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig182292.4888.1 ID=mRNA_H-elongata_contig182292.4888.1|Name=mRNA_H-elongata_contig182292.4888.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig182292:469..633+ (Himanthalia elongata Himel1 dioecious)
GTCTGCGTGATGACGACGGAAGTGTTTCGTAACATGCTGTACGATGAGAG
GGGGGATAAGGAAGCCGGCGCCCTCCAAGACGTGTTCGCCGTGGTGTTCG
ACGAGTTTCACTACATGAACGACAGGGACAGGGGCACGGTAAGACGCACA
CACATATGCAGATAA
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Coding sequence (CDS) from alignment at H-elongata_contig182292:469..633+

>mRNA_H-elongata_contig182292.4888.1 ID=mRNA_H-elongata_contig182292.4888.1|Name=mRNA_H-elongata_contig182292.4888.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig182292:469..633+ (Himanthalia elongata Himel1 dioecious)
ATGACGACGGAAGTGTTTCGTAACATGCTGTACGATGAGAGGGGGGATAA
GGAAGCCGGCGCCCTCCAAGACGTGTTCGCCGTGGTGTTCGACGAGTTTC
ACTACATGAACGACAGGGACAGGGGCACGGTAAGACGCACACACATATGC
AGATAAATGACGACGGAAGTGTTTCGTAACATGCTGTACGATGAGAGGGG
GGATAAGGAAGCCGGCGCCCTCCAAGACGTGTTCGCCGTGGTGTTCGACG
AGTTTCACTACATGAACGACAGGGACAGGGGCACGGTAAGACGCACACAC
ATATGCAGATAA
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