mRNA_H-elongata_contig18228.4887.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18228.4887.1 vs. uniprot
Match: D7FUN1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUN1_ECTSI) HSP 1 Score: 338 bits (867), Expect = 2.250e-100 Identity = 255/669 (38.12%), Postives = 324/669 (48.43%), Query Frame = 1
Query: 1 QIPHLSLLYLHHWKRWDFVSAFVLAGGLHTLSSLFTHENLVIRMNAVNIFVNITAHRGFNWFAPL-----ARGGESATTEACLHRALLNLRSDPAFIPGLIANSWGTPESTG-----AITARRGEL--ITFPGGCLICLEVLAMWLSWVRALHTVDCRLRLSRQLLQAIEDWGGKEDARTDGCEKGLYVPLSS----SQTLSPSGEHGEEDVGCKSNVLPRTACDHRGRLSEEIKPQAQAKNGRAHHAHHALVAAGNEASKDLTNQPTEVKTPESTISRRLEAGSMMEGELKERASVAKLAKTLADDFGRFPPAEEEWEDIRGNGGGEKKESGEVLGGGL----DTEAGRSDARVS-----DERSGVGDND--LEKCQNGTSDIFSRWEKNADAGENASLLEEPLRKAEALKAEGNDAFGKEKFEAVNRAYSDALCCLKSAGFTAPTLP-------LLKLTPGRMDGTSAAANTLRGVLHRNRAAVLLRLFDGAMASTST-------------------------------ASDEMTMTKHDVSSGNICQLPRGMVRTNQNDGGQGSFPPFADNGGEHRALTLLDQCEEDCLRAIEVDPTDKKARFRLARCREMGRQCRRRELAITD------NESNTEQERRRRDKKAALVAKILTRRANCHEINGGT 1794
QIPHLSLLYLHH KRWDFVSAFVL+GGLH L LFTH+NLV+RM A+ V+ITAH GF+WFAPL S +A LHRALL LRS+PAFI GLIANSW + AI A G TFPG CL+CLE+LAMWLSWVRALHTVD LRLSR L +AIE+WGG+ R +PL + +T GE + + A ++E+ K A A D ++ T + P + E +M++ E KERA V +L+K L DF RFPPAE+EWE + + GE+ LGGG TE G+S DE G GD+ E + G S + + RKA ALK EGN+AFG+ + +A AY+ AL L A A L + ++ + A A L GVLHRNRAAV LRLF+ + + H SG ++ G R Q + +L LL++CE DCLRAIEVD DKKAR RL +CRE+ R+C R LA + +++ Q+ R + +KA LVAKIL R HEI GG+
Sbjct: 113 QIPHLSLLYLHHLKRWDFVSAFVLSGGLHALCPLFTHDNLVVRMKAITSLVSITAHPGFDWFAPLPGRIKGTANNSNAIDARLHRALLGLRSEPAFISGLIANSWSGGAAVDDTDATAIEATEGGRGGKTFPGACLMCLELLAMWLSWVRALHTVDGTLRLSRPLFRAIEEWGGRGGEREGNIAWSERLPLPTLPHAKKTCGDGKAEGEGAIVVAKGEIVDVAAVGAAAVTEKGKMTPAAALMEKDSAXXXXXXXXXXXEGDGSS--TGGRAPAGDLE--AETAAMIQAERKERAEVLELSKKLVADFARFPPAEQEWEGVEEDDRGERSGGDLPLGGGAAAPTPTEEGKSSTAAGRGCCDDEARGSGDSGGREETSEAGEETRSSLPSEATEVAPQPPPTSVSTRKALALKLEGNEAFGEGQMQAAMEAYTKALGVLNGAATEARALEGAPKKTTTVTXXTEELEASRAEATALSGVLHRNRAAVALRLFNSKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCSQRQPSTHPTPSGRRRRVSPGRERRTQEEETDDVRRSL------ELSLALLEECESDCLRAIEVDAGDKKARLRLDKCRELRRRCYRGGLASASAGGEGCSTAHSRQDERLQGRKADLVAKILARAEKSHEITGGS 771
BLAST of mRNA_H-elongata_contig18228.4887.1 vs. uniprot
Match: A0A6H5KEI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEI6_9PHAE) HSP 1 Score: 315 bits (806), Expect = 1.450e-91 Identity = 253/678 (37.32%), Postives = 314/678 (46.31%), Query Frame = 1
Query: 1 QIPHLSLLYLHHWKRWDFVSAFVLAGGLHTLSSLFTHENLVIRMNAVNIFVNITAHRGFNWFAP-----LARGGESATTEACLHRALLNLRSDPAFIPGLIANSW--GTPESTGAITAR-----RGELITFPGGCLICLEVLAMWLSWVRALHTVDCRLRLSRQLLQAIEDWGGKEDARTDGCE-KGLYVPLSS-SQTLSPSGEHGEEDVGC----KSNVLPRTACDHRG-RLSEEIKPQAQAKNGRAHHAHHALVAAGNEASKDLTNQPTEVKTPESTISRRLEAGSMMEGELKERASVAKLAKTLADDFGRFPPAEEEWEDIRGNGGGEKKESGEVLGGGLDTEAGRSDARVSDERSGVGDNDLEKCQNGTSDIFSRWEKNADAGENASLLEEPL------------RKAEALKAEGNDAFGKEKFEAVNRAYSDALCCLKSAGFTAPTL---PLLKLTPG-----RMDGTSAAANTLRGVLHRNRAAVLLRLFDGAMASTSTASDEMTMTKHDVSSGNICQLPRGMVRTNQNDGGQGSFPPFADNGGEHR-----------------------------------ALTLLDQCEEDCLRAIEVDPTDKKARFRLARCREMGRQCRRRELAITD------NESNTEQERRRRDKKAALVAKILTRRANCHEINGGT 1794
Q+PHLSLLYLHH KRWDFVSAFVL+GGLH L SLFTH+NLVIRM A+ V+ITAH GF+WFAP + S TTEA LHRALL LRS+PAFI GLIANSW G + T A + RG+ TFPG CL+CLE+LAMWLSWVRALHTVD LRLSR L +AIE+W GK R E +PL++ T P G+ E G V+ A E+I P A A A P I E +M++ E KERA V +L++ L DF RFPPAE+EWE + +GG ++ G++ G RKA ALK EGN+AFG+ +A AY+ AL L A L P K+T ++ + A A L GVLHRNRAAV LRLF+ A+ + A + T + PRG DG G +L LL++CE DCLRAIEVD DKKAR RL +CRE+ R+C R LA + +++ Q+ + +KA LVAKIL R HEI GG+
Sbjct: 67 QVPHLSLLYLHHLKRWDFVSAFVLSGGLHALCSLFTHDNLVIRMKAITSLVSITAHPGFDWFAPPPGRIKGKTNNSNTTEARLHRALLGLRSEPAFISGLIANSWSGGAADDTDATAIKATDGGRGDK-TFPGACLMCLELLAMWLSWVRALHTVDGTLRLSRPLFRAIEEWAGKGGEREGNIEWSDERLPLTTLPHTKKPCGDGKAEGGGAIVVASGEVVDVVAIGGADVTKKEKITPAAVL-------AEKDSGAXXXXXXXXXXXXXXXGGAPAGDIE--AETAAMIQAERKERAEVLELSRKLVADFARFPPAEQEWEGVEEDGG--ERSGGDLPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSAFTRKALALKIEGNEAFGEGDMQAAMEAYTKALGVLNGAATETRPLEGAPKNKMTTXXXXXEELEASRAEATVLSGVLHRNRAAVALRLFNSKAAAAAVAKERATEDNQKNEA-----APRG-------DGVDGGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQEQTDDVRKSLELSLALLEECESDCLRAIEVDAGDKKARLRLDKCRELRRRCYRGGLASASAGREGCSTAHSRQDESLQGRKADLVAKILARAEKSHEITGGS 720
BLAST of mRNA_H-elongata_contig18228.4887.1 vs. uniprot
Match: A0A8K1C1Z4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C1Z4_PYTOL) HSP 1 Score: 95.1 bits (235), Expect = 9.390e-17 Identity = 61/167 (36.53%), Postives = 92/167 (55.09%), Query Frame = 1
Query: 13 LSLLYLHHWKRWDFVSAFVLAGGLHTLSSLFTHENLVIRMNAVNIFVNITAHRGFNWF-APLARGGESATTEACLHRALLNLRS-DPAFIPGLIANSWGTPESTGAITARRGELITFPGGCLICLEVLAMWLSWVRALHTVDCRLRLSRQLLQAIEDWGGKEDARTD 507
L+L YL H + W F+L GL L LF HE+L +R A++ FV +T+ F+WF AP+ G +A LH ++ L + + F+ +I+N ES A + + PGG + L+VLA +LSWVR L+T + LRLSR+LL+ + DW + + D
Sbjct: 103 LALFYLKHVQNWPLTVEFILQDGLQILVDLFLHEDLQVRGQAIDCFVQVTSQSAFDWFEAPV---GYNAMV---LHAKMIALSTGESGFLRSIISNI-RLYESQ----ADKEPMTKLPGGTYVLLQVLAFYLSWVRRLYT-EGALRLSRELLELLHDWQTRTETDND 257
BLAST of mRNA_H-elongata_contig18228.4887.1 vs. uniprot
Match: A0A7S0XSC3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XSC3_HEMAN) HSP 1 Score: 88.6 bits (218), Expect = 1.160e-15 Identity = 53/157 (33.76%), Postives = 77/157 (49.04%), Query Frame = 1
Query: 13 LSLLYLHHWKRWDFVSAFVLAGGLHTLSSLFTHENLVIRMNAVNIFVNITAH-RGFNWFAPLARGGESATTEACLHRALLNLRSDPAFIPGLIANSWGTPESTGAITARRGELITFPGGCLICLEVLAMWLSWVRALHTVDCRLRLSRQLLQAIEDW 480
+ LLYL H +RW F+L GGL +L +L THENL +R AV F +T +W + L R L L + + L+ N G+ +P G CL +LA WLSWVRAL+ + +LRLS+++L A+++W
Sbjct: 119 VPLLYLAHSRRWALAREFILGGGLASLVTLVTHENLYLRSQAVETFSAMTDRCEDVDWL-------DVDDANEKLRRQLFGLSASCDIVKALLGNMKGS----------------YPNGGFSCLRILAFWLSWVRALYCPERKLRLSQKVLDALKEW 252
BLAST of mRNA_H-elongata_contig18228.4887.1 vs. uniprot
Match: A0A7S1GZ69_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GZ69_HEMAN) HSP 1 Score: 88.6 bits (218), Expect = 5.340e-15 Identity = 53/157 (33.76%), Postives = 77/157 (49.04%), Query Frame = 1
Query: 13 LSLLYLHHWKRWDFVSAFVLAGGLHTLSSLFTHENLVIRMNAVNIFVNITAH-RGFNWFAPLARGGESATTEACLHRALLNLRSDPAFIPGLIANSWGTPESTGAITARRGELITFPGGCLICLEVLAMWLSWVRALHTVDCRLRLSRQLLQAIEDW 480
+ LLYL H +RW F+L GGL +L +L THENL +R AV F +T +W + L R L L + + L+ N G+ +P G CL +LA WLSWVRAL+ + +LRLS+++L A+++W
Sbjct: 111 VPLLYLAHSRRWALAREFILGGGLASLVTLVTHENLYLRSQAVETFSAMTDRCEDVDWL-------DVDDANEKLRRQLFGLSASCDIVKALLGNMKGS----------------YPNGGFSCLRILAFWLSWVRALYCPERKLRLSQKVLDALKEW 244
BLAST of mRNA_H-elongata_contig18228.4887.1 vs. uniprot
Match: A0A7S1DV65_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DV65_HEMAN) HSP 1 Score: 88.6 bits (218), Expect = 5.380e-15 Identity = 53/157 (33.76%), Postives = 77/157 (49.04%), Query Frame = 1
Query: 13 LSLLYLHHWKRWDFVSAFVLAGGLHTLSSLFTHENLVIRMNAVNIFVNITAH-RGFNWFAPLARGGESATTEACLHRALLNLRSDPAFIPGLIANSWGTPESTGAITARRGELITFPGGCLICLEVLAMWLSWVRALHTVDCRLRLSRQLLQAIEDW 480
+ LLYL H +RW F+L GGL +L +L THENL +R AV F +T +W + L R L L + + L+ N G+ +P G CL +LA WLSWVRAL+ + +LRLS+++L A+++W
Sbjct: 111 VPLLYLAHSRRWALAREFILGGGLASLVTLVTHENLYLRSQAVETFSAMTDRCEDVDWL-------DVDDANEKLRRQLFGLSASCDIVKALLGNMKGS----------------YPNGGFSCLRILAFWLSWVRALYCPERKLRLSQKVLDALKEW 244
BLAST of mRNA_H-elongata_contig18228.4887.1 vs. uniprot
Match: K3XBE4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBE4_GLOUD) HSP 1 Score: 88.6 bits (218), Expect = 7.140e-15 Identity = 54/162 (33.33%), Postives = 84/162 (51.85%), Query Frame = 1
Query: 16 SLLYLHHWKRWDFVSAFVLAGGLHTLSSLFTHENLVIRMNAVNIFVNITAHRGFNWFAPLARGGESATTEACLHRALLNLRSDPA-FIPGLIAN-SWGTPESTGAIT----ARRGELITFPGGCLICLEVLAMWLSWVRALHTVDCR-LRLSRQLLQAIEDW 480
+L YL H + WD V FV+ GL L+ +F H++L +R A++ FV IT++ F+WF + LH ++ L + + F+ L+ N P+ + A + PGG + L+VLA +LSWVR +T LRLSR+LL +E+W
Sbjct: 101 TLFYLKHARNWDLVVEFVMLDGLQVLADMFLHQDLQVRGQAIDSFVQITSNPRFDWF-----NDPVGYHDKVLHSKMIGLAAPSSPFMRNLMQNIQLYDPKHAKQLLELSDANSNHSVRLPGGTYVMLQVLAFFLSWVRKFYTQPRNELRLSRELLDLLENW 257
BLAST of mRNA_H-elongata_contig18228.4887.1 vs. uniprot
Match: T0QCX1_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QCX1_SAPDV) HSP 1 Score: 86.3 bits (212), Expect = 4.930e-14 Identity = 51/157 (32.48%), Postives = 83/157 (52.87%), Query Frame = 1
Query: 10 HLSLLYLHHWKRWDFVSAFVLAGGLHTLSSLFTHENLVIRMNAVNIFVNITAHRGFNWFAPLARGGESATTEACLHRALLNLRSDPAFIPGLIANSWGTPESTGAITARRGELITFPGGCLICLEVLAMWLSWVRALHTVDCRLRLSRQLLQAIEDW 480
+L+++YL H + W F S F+L GL TL S+F HE++ +R A++ F +T++ F+WF + + E LH +L L + + + L++N TPE + L++LA ++SWVR L+T LRLS LL ++E W
Sbjct: 91 YLAMMYLCHAQEWSFASEFILHDGLVTLVSMFDHEDIHMRGQALDTFTQLTSNPAFDWFQQ-----PTTSFEKALHHKMLLLPNSASIVQQLVSNQ-ATPELS-----------------FCALQILAFYMSWVRKLYTKG-ELRLSSALLASLETW 223
BLAST of mRNA_H-elongata_contig18228.4887.1 vs. uniprot
Match: A0A067D3Y0_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D3Y0_SAPPC) HSP 1 Score: 84.7 bits (208), Expect = 1.520e-13 Identity = 55/174 (31.61%), Postives = 86/174 (49.43%), Query Frame = 1
Query: 10 HLSLLYLHHWKRWDFVSAFVLAGGLHTLSSLFTHENLVIRMNAVNIFVNITAHRGFNWFAPLARGGESATTEACLHRALLNLRSDPAFIPGLIANSWGTPESTGAITARRGELITFPGGCLICLEVLAMWLSWVRALHTVDCRLRLSRQLLQAIEDWGGKEDARTDGCEKGLYV 531
+L+++YL H + W F S F+L GL TL S+F H+++ +R A++ F +T++ F+WF + E LH +L L + + + L+ N TPE + L++LA ++SWVR L+T LRLSR LL ++ W E A D E V
Sbjct: 91 YLAMMYLCHAQVWSFASEFILHDGLVTLVSMFDHDDMHMRGQALDTFTQLTSNPAFDWFQQ-----PTTALEKALHHKMLLLPNSASIVQQLVHNQ-ATPELS-----------------FCALQILAFYMSWVRKLYTKG-ELRLSRALLDSLSAW--TESASPDEAELAANV 238
BLAST of mRNA_H-elongata_contig18228.4887.1 vs. uniprot
Match: A0A7S4FJA5_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FJA5_9EUGL) HSP 1 Score: 79.3 bits (194), Expect = 2.910e-12 Identity = 61/200 (30.50%), Postives = 92/200 (46.00%), Query Frame = 1
Query: 1 QIPHLSLLYLHHWKRWDFVSAFVLAGGLHTLSSLFTHENLVIRMNAVNIFVNIT-AHRG-FNWFAPLARGGESATTEACLHRALLNLRSDPAFIPGLIANSWGTPESTGAITARRGELITFPGGCLICLEVLAMWLSWVRALHTVDCRLRLSRQLLQAIEDWGGKEDARTDGCE--KGLYVPLSSSQTLSPSGEHGEEDV 588
Q P L+ LYL H W+ F GL L+ L NL IR V + ++ + G F+W+ + A + +HR LL L S F+ + N +GE TFP G L+CL++LA WLS+VR T D LRL + +L A++ ++D T+ E + L+ L ++G +DV
Sbjct: 4 QAPSLTCLYLLHHHDWERARPFAAGNGLRVLAGLVGDPNLYIRGQVVEMLHRLSNGYEGQFDWWDKPKDLEDPAQGDVLVHRRLLELHSTD-FLKNCLLNI-------------KGE--TFPEGSLMCLQLLAFWLSYVRHFWTKDGVLRLGQDVLDALKAHAARKDLATEEHELAEKLFEDFGRWPALEEFEDNGIKDV 187 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18228.4887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18228.4887.1 >prot_H-elongata_contig18228.4887.1 ID=prot_H-elongata_contig18228.4887.1|Name=mRNA_H-elongata_contig18228.4887.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=600bp QIPHLSLLYLHHWKRWDFVSAFVLAGGLHTLSSLFTHENLVIRMNAVNIFback to top mRNA from alignment at H-elongata_contig18228:4023..6948- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18228.4887.1 ID=mRNA_H-elongata_contig18228.4887.1|Name=mRNA_H-elongata_contig18228.4887.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2926bp|location=Sequence derived from alignment at H-elongata_contig18228:4023..6948- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18228:4023..6948- >mRNA_H-elongata_contig18228.4887.1 ID=mRNA_H-elongata_contig18228.4887.1|Name=mRNA_H-elongata_contig18228.4887.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3600bp|location=Sequence derived from alignment at H-elongata_contig18228:4023..6948- (Himanthalia elongata Himel1 dioecious)back to top |