mRNA_H-elongata_contig18217.4883.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig18217.4883.1 vs. uniprot
Match: D7G7U1_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U1_ECTSI) HSP 1 Score: 201 bits (512), Expect = 4.270e-59 Identity = 113/249 (45.38%), Postives = 149/249 (59.84%), Query Frame = 1
Query: 223 LLWEISRNSDLRRLCDLLSEGTIDSACPQTLAEALKTGNPAVVEIILRHGREYGDAVSFAVVFLSLGKAGSC--------ERPTSSIFPLHACCHAGSPNIVSVLLRFMIGSFSYAEWKTMVNARDSNGRTALHLASWSPRLQCPGRKHDIIRNLLAHHADVAARDNRGRTPLHEACRAVDRIAVKILLKSGADPLHEDDKSLTPLETVANKHHRCFLDGEFRKQVSAASYINMYAKIVAKRFVARVMR 945
++ EIS+ SDL+RL +L I+++C +T A A++ NPA VE+ L HG+E+ A F F + G+A + R SI PLH CHAG+P IVSVLLRFM S+S + MVNARD NGRTALHL+SWSPR +CPG ++ I+R LL+H A+V A DN GRT LHEACRA D AV+ ET K H LD FRK +S Y+++ A++ AK V+R+MR
Sbjct: 1 MIREISKASDLQRLARVLDHRKINTSCRETFAAAVRDANPAAVEMWLHHGKEHKGAY-FLDAFRAWGEAAAAGHVGGRGGNRSPPSI-PLHLSCHAGAPEIVSVLLRFMTESYSCDDRIAMVNARDLNGRTALHLSSWSPRARCPGTRNAIVRELLSHGANVKAEDNHGRTALHEACRAADHFAVETXXXXXXXXXXXXXXXXXXXETATAKRHWRLLDALFRKNLSTRRYLHLCARVTAKTSVSRIMR 247
BLAST of mRNA_H-elongata_contig18217.4883.1 vs. uniprot
Match: V9DKB1_9EURO (Uncharacterized protein n=3 Tax=Herpotrichiellaceae TaxID=43219 RepID=V9DKB1_9EURO) HSP 1 Score: 63.9 bits (154), Expect = 6.640e-8 Identity = 45/135 (33.33%), Postives = 62/135 (45.93%), Query Frame = 1
Query: 463 PLHACCHAGSPNIVSVLLRFMIGSFSYAEWKTMVNARDSNGRTALHLASWS------------------PRLQCPGRKHDIIRNLLAHHADVAARDNRGRTPLHEACRAVDRIAVKILLKSGADPLHEDDKSLTP 813
PLH +V++L R E+ V +D G+T LHLAS S P Q P + I LLAH ADV A+D +G TPLH A + AV+ L+++GADP+ ++ TP
Sbjct: 94 PLHLAAAHSRAELVALLCR---------EFPQTVTRKDRKGQTPLHLASSSQITPKPNFRNVVSNGSTRPAAQSP-EDNTTIETLLAHGADVNAKDEQGNTPLHNATAWGNLKAVRALIQAGADPMRKNKAGWTP 218
BLAST of mRNA_H-elongata_contig18217.4883.1 vs. uniprot
Match: A0A401QNA6_SCYTO (NF-kappa-B inhibitor-like protein 1 (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401QNA6_SCYTO) HSP 1 Score: 57.4 bits (137), Expect = 4.110e-7 Identity = 30/63 (47.62%), Postives = 39/63 (61.90%), Query Frame = 1
Query: 652 IRNLLAHHA--DVAARDNRGRTPLHEACRAVDRIAVKILLKSGADPLHEDDKSLTPLETVANK 834
+++ L HA VA RGR+PLH AC D IA+++LLK GADPL +D K TPL A +
Sbjct: 21 LKSYLRKHAGLSVAFAGRRGRSPLHVACAQRDDIAMRLLLKHGADPLSQDRKGNTPLHLAARE 83
BLAST of mRNA_H-elongata_contig18217.4883.1 vs. uniprot
Match: UPI00158DC63B (ankyrin-1-like n=1 Tax=Chelonus insularis TaxID=460826 RepID=UPI00158DC63B) HSP 1 Score: 60.1 bits (144), Expect = 2.470e-6 Identity = 39/107 (36.45%), Postives = 55/107 (51.40%), Query Frame = 1
Query: 463 PLHACCHAGSPNIVSVLLRFMIGSFSYAEWKTMVNARDSNGRTALHLASWSPRLQCPGRKHDIIRNLLAHHADVAARDNRGRTPLHEACRAVDRIAVKILLKSGADP 783
PL C +G+ V LL + NA + + +TALH + PG II+ LL H+AD A D+RG TPL EAC + + +AVK+LL + A+P
Sbjct: 426 PLFVACKSGNVAAVQCLLENHVNP----------NATNQHSQTALHYICSAK----PGTTLQIIQLLLKHNADTEAMDDRGWTPLFEACSSGNIVAVKVLLGNHANP 518
BLAST of mRNA_H-elongata_contig18217.4883.1 vs. uniprot
Match: A0A7K5IDR2_TOXRE (ASB18 protein (Fragment) n=1 Tax=Toxostoma redivivum TaxID=99882 RepID=A0A7K5IDR2_TOXRE) HSP 1 Score: 59.3 bits (142), Expect = 3.200e-6 Identity = 36/92 (39.13%), Postives = 49/92 (53.26%), Query Frame = 1
Query: 541 YAEWKTMVNARDSNGRTALHLASWSPRLQCPGRKHDIIRNLLAHHADVAARDNRGRTPLHEACRAVDRIAVKILLKSGADPLHEDDKSLTPL 816
Y + V+AR++ G TAL + P Q G + + L AH ADV ARD R+PLH AC A + + LL+SGAD D ++PL
Sbjct: 209 YLRRRASVDARNARGETALGILCGHPAGQ-DGDSLQLFQLLAAHGADVGARDESWRSPLHRACGAANAELARRLLRSGADANAIDYDGVSPL 299
BLAST of mRNA_H-elongata_contig18217.4883.1 vs. uniprot
Match: UPI00112660FB (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B isoform X2 n=3 Tax=Tetrapoda TaxID=32523 RepID=UPI00112660FB) HSP 1 Score: 59.3 bits (142), Expect = 4.580e-6 Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 1
Query: 556 TMVNARDSNGRTALHLASWSPRLQCPGRKHDIIRNLLAHHADVAARDNRGRTPLHEACRAVDRIAVKILLKSGADPLHEDDKSL-TPLETVANK-HHRCFL 852
++VN +D+ GRT LH A+++ R++C ++ LL+H+A V A D G+TP+ A AV IL+ S L DK L TPL +K H +C L
Sbjct: 864 SIVNCKDAKGRTPLHAAAFTGRMEC-------LQLLLSHNARVNAADKSGKTPVMMASENGHAGAVDILVNSAKADLTMKDKDLNTPLHLACSKGHEKCAL 957
BLAST of mRNA_H-elongata_contig18217.4883.1 vs. uniprot
Match: UPI0011298E55 (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B isoform X1 n=1 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI0011298E55) HSP 1 Score: 59.3 bits (142), Expect = 4.640e-6 Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 1
Query: 556 TMVNARDSNGRTALHLASWSPRLQCPGRKHDIIRNLLAHHADVAARDNRGRTPLHEACRAVDRIAVKILLKSGADPLHEDDKSL-TPLETVANK-HHRCFL 852
++VN +D+ GRT LH A+++ R++C ++ LL+H+A V A D G+TP+ A AV IL+ S L DK L TPL +K H +C L
Sbjct: 873 SIVNCKDAKGRTPLHAAAFTGRMEC-------LQLLLSHNARVNAADKSGKTPVMMASENGHAGAVDILVNSAKADLTMKDKDLNTPLHLACSKGHEKCAL 966
BLAST of mRNA_H-elongata_contig18217.4883.1 vs. uniprot
Match: A0A7L2XYF4_9PASS (ASB18 protein (Fragment) n=1 Tax=Erpornis zantholeuca TaxID=1112836 RepID=A0A7L2XYF4_9PASS) HSP 1 Score: 58.2 bits (139), Expect = 7.630e-6 Identity = 38/95 (40.00%), Postives = 49/95 (51.58%), Query Frame = 1
Query: 541 YAEWKTMVNARDSNGRTALHLASWSPRLQCPGRKHDIIRN---LLAHHADVAARDNRGRTPLHEACRAVDRIAVKILLKSGADPLHEDDKSLTPL 816
Y + + VNAR++ TAL + PG D +R L AH ADV ARD R PLH AC A D V++LL+ GAD D ++PL
Sbjct: 209 YLQRQARVNARNAREETALGVLCG----HAPGMGEDSLRFFQLLAAHGADVDARDESWRRPLHRACGAADAGLVRLLLRRGADTNAIDYNGVSPL 299
BLAST of mRNA_H-elongata_contig18217.4883.1 vs. uniprot
Match: D7G013_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G013_ECTSI) HSP 1 Score: 57.0 bits (136), Expect = 1.050e-5 Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 1
Query: 562 VNARDSNGRTALHLASWSPRLQCPGRKHDIIRNLLAHHADVAARDNRGRTPLHEACRAVDRIAVKILLKSGADPLHEDDKSLTPLETVA 828
+ ARD +GRTALHLAS RL + +R L+ + ++ AR G TPLH+AC+A+ AV+ LL+ GA+ D + TP A
Sbjct: 19 LEARDHDGRTALHLAS-GHRLG----SDETLRALVESNGNIEARTFLGETPLHKACKALRVSAVEQLLRFGANDAAVDAEGRTPAAMTA 102
BLAST of mRNA_H-elongata_contig18217.4883.1 vs. uniprot
Match: A0A2T1B6K1_9BURK (Ankyrin repeat protein n=1 Tax=Paraburkholderia insulsa TaxID=1441714 RepID=A0A2T1B6K1_9BURK) HSP 1 Score: 57.4 bits (137), Expect = 1.230e-5 Identity = 39/107 (36.45%), Postives = 54/107 (50.47%), Query Frame = 1
Query: 463 PLHACCHAGSPNIVSVLLRFMIGSFSYAEWKTMVNARDSNGRTALHLASWSPRLQCPGRKHDIIRNLLAHHADVAARDNRGRTPLHEACRAVDRIAVKILLKSGADP 783
PLH G+ ++L +I +NA DS G+TALHLAS + PG K +I +LL+ A+ D++G PLH A R + AV+ L GADP
Sbjct: 175 PLHVAAREGAVAASALLASAIIERVGAPG----LNAVDSLGQTALHLASTQWPGERPGAKAVVIEDLLSLGANPNLLDSQGDAPLHRAFRTKNAAAVRALAAGGADP 277 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18217.4883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18217.4883.1 >prot_H-elongata_contig18217.4883.1 ID=prot_H-elongata_contig18217.4883.1|Name=mRNA_H-elongata_contig18217.4883.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=315bp EPKHHRIFWKEYTTSASLWEGVHQALGPVKTHKANDDKGDGDDDGDGKNNback to top mRNA from alignment at H-elongata_contig18217:187..2710+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18217.4883.1 ID=mRNA_H-elongata_contig18217.4883.1|Name=mRNA_H-elongata_contig18217.4883.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2524bp|location=Sequence derived from alignment at H-elongata_contig18217:187..2710+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18217:187..2710+ >mRNA_H-elongata_contig18217.4883.1 ID=mRNA_H-elongata_contig18217.4883.1|Name=mRNA_H-elongata_contig18217.4883.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1890bp|location=Sequence derived from alignment at H-elongata_contig18217:187..2710+ (Himanthalia elongata Himel1 dioecious)back to top |