mRNA_H-elongata_contig18200.4879.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18200.4879.1
Unique NamemRNA_H-elongata_contig18200.4879.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18200.4879.1 vs. uniprot
Match: A0A6H5KTH9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTH9_9PHAE)

HSP 1 Score: 445 bits (1145), Expect = 1.220e-153
Identity = 241/342 (70.47%), Postives = 289/342 (84.50%), Query Frame = 1 
Query:    1 GTAQRTRHHARSIM---HGEGGARGDTVPKAVAAGLLGVQLLGMPIAVVARQATVAGVALPRFELVTAGARVAAPRSPRTIEEEMID-EVEKFERQFEVEGNLKKQSNVKPSPLPDVLKPPKKGQESPRVKLVEIPNERLEKSVQTIQGLSPYLDEVEYLITARKWEYLKGFLGVFGSCEEDFVNLIDGMYPTEKPVDISSRDSMQLEAQNVFLAVDDLYQASISKKVKGAEKAFVKLALAYDRFIKAGNILSVYDPVSSTEKFFNDIPDEMLRYERDSKAPLEVRDAVLILKGPDMGRTGKIVGIIKSRSEAIVRVDGR-TREMRILELSDIARQLPDDPK 1011
            G+ QR R ++   M    GEGG RG+ + KAV AGLLG+QLL +P+ VV+RQ    G ALPR ++V+A A V AP++  T EE+ ++ E+EKFER+ +VEGNLKKQS  K  PLP+ L+ PKKG++SPRVKLV + N++L KSV+TIQGL+PYLDEVEYLIT+R W+YLKGFLGVF +CEEDFV LIDGMYPT+KPVD+SSRDSMQLEAQNVFLAVDDLYQAS++KKVKG+EKA+VKLAL+YDRF+KAGNI+  YDPVS+TEKFF DIPDEMLRYERDSK PL VRDAVLILKGPD GRT  +VG+IKSR++A+VR+DG  TREMRILELSDIARQLPDDPK
Sbjct:   42 GSTQRGRRNSGCSMGAGSGEGG-RGEVMNKAVVAGLLGLQLLSLPLGVVSRQPR--GAALPRLDVVSAAAEVTAPQA--TEEEKFVEIELEKFERKTQVEGNLKKQSKAKRVPLPEELQTPKKGKQSPRVKLVPVSNDKLAKSVETIQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCEEDFVALIDGMYPTDKPVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVPAYDPVSNTEKFFTDIPDEMLRYERDSKVPLTVRDAVLILKGPDKGRTAIVVGVIKSRNQAVVRMDGTLTREMRILELSDIARQLPDDPK 378
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BLAST of mRNA_H-elongata_contig18200.4879.1 vs. uniprot
Match: A0A836C8F8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8F8_9STRA)

HSP 1 Score: 247 bits (630), Expect = 3.650e-78
Identity = 124/209 (59.33%), Postives = 163/209 (77.99%), Query Frame = 1 
Query:  382 LVEIPNERLEKSVQTIQGLSPYLDEVEYLITARKWEYLKGFLGVFGSCEEDFVNLIDGMYPTEKPVDISSRDSMQLEAQNVFLAVDDLYQASISKKVKGAEKAFVKLALAYDRFIKAGNILSVYDPVSSTEKFFNDIPDEMLRYERDSKAPLEVRDAVLILKGPDMGRTGKIVGIIKSRSEAIVRVDGRTREMRILELSDIARQLPDDP 1008
            +V + + +LE +V  IQ L+PYL+EVEYLIT++ W YL+GFLGVF   EE+FV+LIDG+YPTE P D SSR++MQ EAQNVFLA+DDL  AS  K+ K AEK+FVKLALAYDRF+KAG ++  YDP++STE F++ IPD  L Y  D+  P E++D +LILKGPD GRTG+++G+IKSR EAIVR+D   +E+++L L DIA+QL   P
Sbjct:    1 MVPVRDNQLETAVAKIQALNPYLEEVEYLITSKNWGYLQGFLGVFSEQEENFVDLIDGLYPTESPADKSSREAMQYEAQNVFLALDDLNTASRYKRAKAAEKSFVKLALAYDRFLKAGGLVQTYDPITSTEPFYSSIPDSALVY--DTTKPPELKDNILILKGPDKGRTGRLIGVIKSRQEAIVRMD-HNKEVKLLSLGDIAKQLDTPP 206
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BLAST of mRNA_H-elongata_contig18200.4879.1 vs. uniprot
Match: A0A7S2RHK3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHK3_9STRA)

HSP 1 Score: 151 bits (381), Expect = 8.640e-39
Identity = 78/203 (38.42%), Postives = 134/203 (66.01%), Query Frame = 1 
Query:  427 IQGLSPYLDEVEYLITARKWEYLKGFLGVFGSCEEDFVNLIDGMYPTEKPVDISSRDSMQLEAQNVFLAVDDLYQASISKKVKGAEKAFVKLALAYDRFIKAGNILSVYDPVSSTEKFFNDIPDEMLRYERDSKAPLEVRDAVLILKGPDMGRTGKIVGIIKSRSEAIVRVDGRTR--------EMRILELSDIARQLPDDPK 1011
            I+ L  YL+E+E  I ARKW+ L  ++GVF   E  F N+ID +  ++   D  ++ +M+ EA+ +FL +D + +A+  + ++ AEK++V+LA+AYDRF+KA ++  VYD  + T K +  IP+++L Y+R+   P  V+D VLI+ GPD GRTGK++G+  + S+ +VRV+ R R        E+++++L ++A+ +PD P+
Sbjct:  170 IKVLYAYLEEMERDIFARKWDTLSSYIGVFEKQELAFENIIDSLRTSQAAADRDAKRAMEYEARQMFLTLDAMAEATRFRDIRQAEKSYVQLAIAYDRFLKAADLYDVYDD-TDTSKLYESIPEDLLVYDRED--PPRVQDDVLIIAGPDKGRTGKLIGVSDASSKGVVRVEYRKRTASKDASFEVKVVDLQNVAKTIPDKPQ 369
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BLAST of mRNA_H-elongata_contig18200.4879.1 vs. uniprot
Match: A0A7S2UZ25_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ25_9STRA)

HSP 1 Score: 135 bits (341), Expect = 3.910e-33
Identity = 82/197 (41.62%), Postives = 123/197 (62.44%), Query Frame = 1 
Query:  427 IQGLSPYLDEVEYLITARKWEYLKGFLGVFGSCEEDFVNLIDGMYPTEKPVDISSRDSMQLEAQNVFLAVDDLYQASISKKVKGAEKAFVKLALAYDRFIKAGNILSVYDPVS-STEKFFNDIPDEML---RYERDSKAPLE---VRDAVLILKGPDMGRTGKIVGIIKSRSEAIVRVDGRTREMRILELSDIARQL 996
            IQ L PY+DEVE  I   +W  + GFLGVF   E+ FVNLIDG++P+  P+D  SR+SMQ EAQ +FLA+D+L +A+  K+V+ +  A+ KLA +Y RF++A  ++   D    +T    ND   EM    +YE   ++ LE    RD VL++ GPD GR GK+V I +   +A+V++D  T+E+  + L  + +Q+
Sbjct:  188 IQALQPYVDEVENYIYEERWPLMGGFLGVFSEQEDQFVNLIDGLFPSNSPLDTISRESMQYEAQRMFLALDELREAAKLKQVRISRDAYSKLAKSYFRFLEAAALVPKVDLAQLATSTNLNDSEMEMEAEEKYEERKQSTLERPEPRDEVLLVSGPDKGRLGKLVAI-EINGKAVVKLD-ITKEVIEVPLESVVKQV 382
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BLAST of mRNA_H-elongata_contig18200.4879.1 vs. uniprot
Match: A0A7R9U506_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U506_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.970e-32
Identity = 68/161 (42.24%), Postives = 105/161 (65.22%), Query Frame = 1 
Query:  427 IQGLSPYLDEVEYLITARKWEYLKGFLGVFGSCEEDFVNLIDGMYPTEKPVDISSRDSMQLEAQNVFLAVDDLYQASISKKVKGAEKAFVKLALAYDRFIKAGNILSVYDPVSSTEKFFNDIPDEMLRYERDSKAPLEVRDAVLILKGPDMGRTGKIVGII 909
            I  L PY+DE+E  I    +E L+ FL VF   E+ FV  IDG+        I++ ++M+ EA+ +FLA+D++ +A+  +K  G +K ++KLALAYDR++KA + L  YD + STEK+F +IPDE L ++ + K   E +D V+ ++GPD GRTG ++G I
Sbjct:  121 IAALKPYMDEIERYIFTNDYEPLRAFLNVFSQQEDSFVKTIDGVASRGTADAIAAAEAMEHEAKQLFLALDEIRKAATLEKPSGLKKGYIKLALAYDRYLKASDNLPGYDKIVSTEKYFANIPDEWLVFDTEKKP--EPQDPVIFIEGPDKGRTGVLLGYI 279
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BLAST of mRNA_H-elongata_contig18200.4879.1 vs. uniprot
Match: A0A6U4CV34_9STRA (Hypothetical protein n=10 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CV34_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.610e-28
Identity = 74/181 (40.88%), Postives = 113/181 (62.43%), Query Frame = 1 
Query:  397 NERLEKSVQTIQGLSPYLDEVEYLITARKWEYLKGFLGVFGSCEEDFVNLIDGMYPTEK-PVDISSRDSMQLEAQNVFLAVDDLYQASISKKVKGAEKAFVKLALAYDRFIKAGNILSV-YDPVSSTEKFFNDIPDEMLRYERDSKAPLEVRDAVLILKGPDMGRTGKIVGIIKSRSEAIV 933
            N  + K+ + I  L PYLDE++  I    +  L+ FL VF + EE F+  I+ +    + P    + ++M+ EA+ +FLA+DD+ +A+  +K    +K ++KLALAYDR++KA + L + YD V STEKFF D+PDE L Y+ ++  P+ + D VL + GPD GRTG ++G  KSR  A V
Sbjct:  116 NSEVRKAREKIAALKPYLDEIQRYIYTEDYAPLRAFLNVFSAQEEAFLTTIESVGSASRGPAASVTAEAMEHEAKEIFLALDDIRKAATLQKPVALKKGYIKLALAYDRYLKASDNLPLGYDNVVSTEKFFADVPDEWLVYDTET-LPVSL-DPVLFIAGPDKGRTGILLGY-KSRPIADV 293
[Close]
BLAST of mRNA_H-elongata_contig18200.4879.1 vs. uniprot
Match: A0A7S3Y3I2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3I2_HETAK)

HSP 1 Score: 115 bits (289), Expect = 2.540e-26
Identity = 63/203 (31.03%), Postives = 116/203 (57.14%), Query Frame = 1 
Query:  427 IQGLSPYLDEVEYLITARKWEYLKGFLGVFGSCEEDFVNLIDGMYPTEKPVDISSRDSMQLEAQNVFLAVDDLYQASISKKVKGAEKAFVKLALAYDRFIKAGNILSVYDPVSSTEKFFNDIPDEMLRYERDSKAPLEVRDAVLILKGPDMGRTGKIVGIIKS-------RSEAIVRVDG------RTREMRILELSDIARQL 996
            ++ ++  LDE++  I    WE++  +   F +    F    D  +  E   D  SR +++ E   +F AV+ L +A+  K  + A+ AF ++++AYDR++KAG +   YDPV+STEKFF D+PD  LR+   +  P +++D VL+  GPD G+TG ++G+ ++       +   IV++D       + RE++++  + +A++L
Sbjct:   91 LRRIARTLDELQRDIFNEDWEFVATYPATFRAFVPVFTRYTDARFEGEGEADRQSRVALRYEVGRLFGAVERLKRAAEKKDPREAQAAFAQISVAYDRYLKAGYLYDAYDPVTSTEKFFADVPDSALRFAPPAADPPKIKDLVLLTAGPDKGKTGTLIGLEETLGSKGEKKKSGIVKLDNTIGRVSKIREIKVVPYAIVAKRL 293
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BLAST of mRNA_H-elongata_contig18200.4879.1 vs. uniprot
Match: A0A0G4GSY0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GSY0_VITBC)

HSP 1 Score: 116 bits (291), Expect = 2.690e-26
Identity = 64/203 (31.53%), Postives = 118/203 (58.13%), Query Frame = 1 
Query:  409 EKSVQTIQGLSPYLDEVEYLITARKWEYLKGFLGVFGSCEEDFVNLIDGMYPTEKPVDISSRDSMQLEAQNVFLAVDDLYQASISKKVKGAEKAFVKLALAYDRFIKAGNILSVYDPVSSTEKFFNDIPDEMLRYERDSKAPLEVRDAVLILKGPDMGRTGKIVGI-----IKSRSEAIVRVD---GRTREMRILELSDIARQ 993
            +K    I+ ++  LDE++  I    W+ L  +     +    F    D  +P + PVD ++R +++ E   +F +V+ L +A   K V+  E+AF  +++++DR++KAG++  VYDP+ STEKFF  + D  L Y    + P ++RD VL+L+GPD G+TG ++G+      K + + +V++D   G  RE++++  + IA++
Sbjct:  106 QKIAPRIRQIATVLDELQADIYDEDWDILASYPQQLRAYVPIFTKYTDSAFPGKDPVDENTRFALRYEVGRLFGSVERLKRAVDKKDVRETEEAFAAMSVSFDRYLKAGDLYEVYDPIISTEKFFEGVEDSQLVYVPPLRDPPKIRDQVLLLRGPDKGKTGILLGVEGDEVAKVKRKGVVKLDTKVGSIRELKVVPYAFIAKR 308
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BLAST of mRNA_H-elongata_contig18200.4879.1 vs. uniprot
Match: D7FKJ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKJ3_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.420e-25
Identity = 62/188 (32.98%), Postives = 114/188 (60.64%), Query Frame = 1 
Query:  448 LDEVEYLITARKWEYLKGFLGVFGSCEEDFVNLIDGMYPTEKPVDISSRDSMQLEAQNVFLAVDDLYQASISKKVKGAEKAFVKLALAYDRFIKAGNILSVYDPVSSTEKFFNDIPDEMLRYERDSKAPLEVRDAVLILKGPDMGRTGKIVGI---IKSRSEAIVRVDGRT----REMRILELSDIAR 990
            LDE++  I+   W+ +  +   F +    F    D  +PT+ PVD +SR +++ E    + AV+ L +A+  +  + A+ AF  +++AYDR++KAGN+   YD V+STE F+ D+ +  L+Y   SK P +++D VL++ GPD G+TG ++G+     S ++AIV+++  +    RE++++ L  +A+
Sbjct:  141 LDELQDDISNSDWDLVTTYPNAFRTLVPVFTKYTDAAFPTDDPVDTTSRVALRYEVGRFYGAVERLKRAAEQQNSREAQSAFAAMSVAYDRYLKAGNLYDGYDSVTSTEGFYADVSNSSLKYVPPSKDPPKIKDNVLLVAGPDKGKTGFMIGVEGGSLSATKAIVKLETSSALGMREIKVVPLDYVAK 328
[Close]
BLAST of mRNA_H-elongata_contig18200.4879.1 vs. uniprot
Match: A0A7S3Y3T3_HETAK (Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3T3_HETAK)

HSP 1 Score: 115 bits (289), Expect = 7.980e-25
Identity = 63/203 (31.03%), Postives = 116/203 (57.14%), Query Frame = 1 
Query:  427 IQGLSPYLDEVEYLITARKWEYLKGFLGVFGSCEEDFVNLIDGMYPTEKPVDISSRDSMQLEAQNVFLAVDDLYQASISKKVKGAEKAFVKLALAYDRFIKAGNILSVYDPVSSTEKFFNDIPDEMLRYERDSKAPLEVRDAVLILKGPDMGRTGKIVGIIKS-------RSEAIVRVDG------RTREMRILELSDIARQL 996
            ++ ++  LDE++  I    WE++  +   F +    F    D  +  E   D  SR +++ E   +F AV+ L +A+  K  + A+ AF ++++AYDR++KAG +   YDPV+STEKFF D+PD  LR+   +  P +++D VL+  GPD G+TG ++G+ ++       +   IV++D       + RE++++  + +A++L
Sbjct:  600 LRRIARTLDELQRDIFNEDWEFVATYPATFRAFVPVFTRYTDARFEGEGEADRQSRVALRYEVGRLFGAVERLKRAAEKKDPREAQAAFAQISVAYDRYLKAGYLYDAYDPVTSTEKFFADVPDSALRFAPPAADPPKIKDLVLLTAGPDKGKTGTLIGLEETLGSKGEKKKSGIVKLDNTIGRVSKIREIKVVPYAIVAKRL 802
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18200.4879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTH9_9PHAE1.220e-15370.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C8F8_9STRA3.650e-7859.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2RHK3_9STRA8.640e-3938.42Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2UZ25_9STRA3.910e-3341.62Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9U506_9STRA2.970e-3242.24Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6U4CV34_9STRA1.610e-2840.88Hypothetical protein n=10 Tax=Phaeomonas parva Tax... [more]
A0A7S3Y3I2_HETAK2.540e-2631.03Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4GSY0_VITBC2.690e-2631.53Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
D7FKJ3_ECTSI1.420e-2532.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3Y3T3_HETAK7.980e-2531.03Glutamyl-tRNA(Gln) amidotransferase subunit B, mit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18200contigH-elongata_contig18200:3664..7117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue9.4e-24
Seed eggNOG ortholog2880.D7FKJ3
EggNOG OGs2BGND@1,2S19T@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTranslation protein SH3-like domain
Ec32 orthologEc-12_002220.1
Exons7
Model size1011
Cds size1011
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930048.4599907-CDS-H-elongata_contig18200:3663..39131622930048.4599907-CDS-H-elongata_contig18200:3663..3913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18200 3664..3913 +
1691679260.7395728-CDS-H-elongata_contig18200:3663..39131691679260.7395728-CDS-H-elongata_contig18200:3663..3913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18200 3664..3913 +
1622930048.4763515-CDS-H-elongata_contig18200:4626..46981622930048.4763515-CDS-H-elongata_contig18200:4626..4698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18200 4627..4698 +
1691679260.754716-CDS-H-elongata_contig18200:4626..46981691679260.754716-CDS-H-elongata_contig18200:4626..4698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18200 4627..4698 +
1622930048.490668-CDS-H-elongata_contig18200:4974..51031622930048.490668-CDS-H-elongata_contig18200:4974..5103Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18200 4975..5103 +
1691679260.7650802-CDS-H-elongata_contig18200:4974..51031691679260.7650802-CDS-H-elongata_contig18200:4974..5103Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18200 4975..5103 +
1622930048.5105062-CDS-H-elongata_contig18200:5476..56761622930048.5105062-CDS-H-elongata_contig18200:5476..5676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18200 5477..5676 +
1691679260.7758782-CDS-H-elongata_contig18200:5476..56761691679260.7758782-CDS-H-elongata_contig18200:5476..5676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18200 5477..5676 +
1622930048.5269291-CDS-H-elongata_contig18200:5973..60711622930048.5269291-CDS-H-elongata_contig18200:5973..6071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18200 5974..6071 +
1691679260.7865965-CDS-H-elongata_contig18200:5973..60711691679260.7865965-CDS-H-elongata_contig18200:5973..6071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18200 5974..6071 +
1622930048.5499997-CDS-H-elongata_contig18200:6437..65401622930048.5499997-CDS-H-elongata_contig18200:6437..6540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18200 6438..6540 +
1691679260.8050926-CDS-H-elongata_contig18200:6437..65401691679260.8050926-CDS-H-elongata_contig18200:6437..6540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18200 6438..6540 +
1622930048.5637095-CDS-H-elongata_contig18200:6958..71171622930048.5637095-CDS-H-elongata_contig18200:6958..7117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18200 6959..7117 +
1691679260.8163218-CDS-H-elongata_contig18200:6958..71171691679260.8163218-CDS-H-elongata_contig18200:6958..7117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18200 6959..7117 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18200.4879.1prot_H-elongata_contig18200.4879.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18200 3664..7117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18200.4879.1

>prot_H-elongata_contig18200.4879.1 ID=prot_H-elongata_contig18200.4879.1|Name=mRNA_H-elongata_contig18200.4879.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=337bp
GTAQRTRHHARSIMHGEGGARGDTVPKAVAAGLLGVQLLGMPIAVVARQA
TVAGVALPRFELVTAGARVAAPRSPRTIEEEMIDEVEKFERQFEVEGNLK
KQSNVKPSPLPDVLKPPKKGQESPRVKLVEIPNERLEKSVQTIQGLSPYL
DEVEYLITARKWEYLKGFLGVFGSCEEDFVNLIDGMYPTEKPVDISSRDS
MQLEAQNVFLAVDDLYQASISKKVKGAEKAFVKLALAYDRFIKAGNILSV
YDPVSSTEKFFNDIPDEMLRYERDSKAPLEVRDAVLILKGPDMGRTGKIV
GIIKSRSEAIVRVDGRTREMRILELSDIARQLPDDPK
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mRNA from alignment at H-elongata_contig18200:3664..7117+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18200.4879.1 ID=mRNA_H-elongata_contig18200.4879.1|Name=mRNA_H-elongata_contig18200.4879.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3454bp|location=Sequence derived from alignment at H-elongata_contig18200:3664..7117+ (Himanthalia elongata Himel1 dioecious)
GGGACTGCACAACGCACGCGACATCACGCGCGGAGCATTATGCACGGCGA
GGGTGGAGCGCGGGGTGACACGGTACCAAAAGCCGTCGCGGCGGGGCTGT
TGGGAGTCCAGCTCTTGGGGATGCCGATCGCTGTAGTCGCCAGGCAAGCT
ACTGTCGCGGGCGTGGCGCTCCCGCGGTTCGAGCTGGTCACGGCGGGGGC
TAGAGTGGCGGCGCCGAGGTCTCCGCGCACGATAGAGGAAGAGATGATCG
GTGAGATAAAACAATCGAGCGTGCGCAAGTCGTGCCGCCGGCAGCGTAGA
GTTGACACGGCCATAATCAACAGTACCCGCGACCTAAACCTATAGCACCG
GTCGGTTGCCTGTGATAGAAGGGACGGAAAAACAAAAGTATGTGGACGGG
GAGGGAGAAATCTCACAAACTTCGCGACCGAAAGGATTGAAAAAACGTTC
GTCAAAGCAAGGACATCTGAATTATAGTATATACACGTAGCATGATAGAC
GTCTGTCTTGTCTCTATGCGGGAATGTCTCCATATTACCATGTGTGCTGG
TGCTATCGGCCTGACTGTGCCCAAACATATATCCTTGGCATATTTTTATT
AAAAAACATATGAACTCATTAAGACCCTTGTTGGTTCGACAGAACACACT
CCGCGCCAAATTACAAGATCTAGCTGGATTGAGATCGAACAAGGATGCAC
CCATTCAATTTATTCTTATCTTTGCGCAACGTCGATCGCATTATTCACTG
TCGTGCTGCCGTGGAAGCCGGATGAGCCCTATAAAGACTAAGAGACATTT
GGCAACGTTTCGCCTATTCGGATGTGTTTAAGTATGAATGTTGACGAGCC
AGAGCACGTGGCTGCCGCGCACGCTTCGAACGGCTGTAGAGAGAGTTCTC
GAACACAGGTTAGCGCGTTGTCTGACGAAGGACGTTTTGTACCGCGCGCG
TCCGGCGTTGCAGATGAGGTCGAGAAGTTCGAGCGCCAGTTCGAGGTGGA
AGGCAACCTGAAGAAGCAGTCAAATGTCAAGCCGTGTAAGAATGAACCGA
ACAACAGCACGATAAGCGTTTCTTGCATGTCAGCGGGTGAAACCAGAATA
CTTGTCAAAGTACGGAGAATCCCGCATTACCTTCGGTACAGCAGTCTTCG
TTGTTGCTGCTTTCCACCTCAGAATCTACCTTCGCTCACGGGGAGAGGTA
TCTTCAACGATCTGATACTGAATGTTGTGCTGTATCTGGCACTGAACGCC
GTAGCAACCTAACCGTAAGTTCGTCCCCCCTGTTGCGATCGTTTCTTGCG
ATTATCGAAAGCCCCCCTGCCAGACGTGCTCAAGCCTCCCAAAAAAGGAC
AAGAATCCCCTCGTGTCAAGCTCGTGGAGATACCTAACGAAAGGCTTGAG
AAATCGGTGCAAACCATCCAAGGGCTCTCTCCCTACTTGGGTGAGGACGT
CCCAACGAGTGAATAAGTCGCGGCAAAACCCTGATGATATTATTGGAATC
ATCGGTGGGGAAGAGAGAGAACTTAACGGTGGTGATATGAAGTTCTCATT
GAGAATATCTGCGCATGTTGCCGATCGTTGATCAACCTTGTTCATGTGGA
AGTTTGGTCGATAAATGTTTTGTATTTCCCCGCAAGTCGACCGATACACA
TGGCCCCCGGTGTTGTCATTCCCGTGGCCGAGTTGTTACACATACTCCCT
TACAAGTTACCTTCGACCGAAAACCACAGCCCGCAACGATGGTGGCGTTG
AGAAGTCCCCTTTGAGCTGTAACGCCCGTGGGATTTGTGTCGGAACCCAT
CCAAATGTGGCAGACGAGGTGGAGTACTTGATCACCGCGCGGAAGTGGGA
GTACCTCAAGGGGTTCCTCGGCGTATTCGGGTCTTGTGAGGAAGATTTTG
TCAATTTGATCGACGGTATGTACCCGACGGAGAAGCCGGTGGACATCAGC
TCCAGAGACTCGATGCAGCTGGAAGCACAGAACGTATTTCTCGCCGTGGA
TGACTTGTATCAGGTGTGAAGATTATCGGTCCAATACGGCGATGTGCTGG
TGCAGGGCTGTAACGTGTTGGAGATGCATAATAAATCCAATGCCGGGAGA
TGGTATGTTGAATCGTTTCTCGTCGCGGAACGGGCTAACTATTGGAAGAC
ATCTGCGGCAGGAGCAGCAATATCCTTGAGGGAGTGGCAGCGAAGGTGGG
ATCTGTCACGCGCGGTTTTCCTAGCATCCTGTTCCTATAATGGTGGCGGT
TTTGAGTGTGACCGCGATTTCTTGAGCAAACCAGTGACCACCTGCGCTTT
ACTGCCTCAGGCTTCGATTTCGAAGAAAGTGAAAGGGGCCGAGAAAGCGT
TTGTCAAGCTGGCGCTGGCTTATGATCGCTTCATCAAAGCTGGTAACATC
CTTTCTGTGTAAGTCACTTCCGAATCCTTCGCCGCTCGTTGACACACCCA
ACTTTTTCCAGCGATCAAACTTTCGAATGTCGTGTCTAATCGTATTTCTT
TCCCCCAGAGGCGATTGGTTTCAGCGCGCAATAGGCTGGCACCGAATATT
TTTGCGTTTGGCGGGCACACCCCTGCGACCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCACCCCCCCTTCCTTATTCTGGCCNNNNNNNNNNGGGGTTGT
GTTTCCGCCCCAAAAGGGTGGCCCCCGAATTTTTTTTGGTTGGGGGGGCC
CCCCCCCCCCCCCCCCCCCCCCCCCGCCGGTCCAAACCCTAACTCCTGGT
TCCGTATGCTGGCCGTTGCCTCAGCTATGATCCGGTGTCCTCTACGGAGA
AGTTCTTCAACGACATCCCCGACGAGATGCTGCGCTACGAACGGGACTCG
AAGGCCCCGCTTGAAGTTCGCGATGCGGTGAGAATAAGGGTCAGAGGAAC
CCCGGGGGAGGACGCTCGATGAAGGCGAACATAATATAAGGGGCATAATC
ATGCTGACCCAGGCGAAATCAACCCGCTTGGTGCTTCTACTGGCGTAGGA
TACGAACCGATAACCGCTTACGTATTCCCTGTTGCAAGGCAACATGCCGG
AGCAATACGCAAGATCTGGGGCGCACGTGTCACAGCCGAGCAATGTATAC
AGTCTAGGGAGTGCTTCGTCGCTACCTGTTCACGTATTCCTGCACGAAAC
CGTCGGGCTGGAGCTGATCCGTTTTTCCCAGAAACGTGGTGACGCTATCG
AGTTCTCGCATTCTTCGCTTGCGTGTGTTAAACGAAGCGCATCGAATTTT
GTCCCCCGAGGTCACGGTTTCCCGTGGAACGTTGTCGGATTACAGGTGCT
CATTCTCAAGGGCCCGGACATGGGGCGCACGGGAAAGATAGTGGGCATAA
TCAAAAGCCGAAGCGAGGCAATCGTTAGGGTTGACGGAAGAACACGAGAG
ATGCGCATCCTGGAGCTGTCGGATATCGCCCGACAGCTGCCTGACGACCC
CAAG
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Coding sequence (CDS) from alignment at H-elongata_contig18200:3664..7117+

>mRNA_H-elongata_contig18200.4879.1 ID=mRNA_H-elongata_contig18200.4879.1|Name=mRNA_H-elongata_contig18200.4879.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2022bp|location=Sequence derived from alignment at H-elongata_contig18200:3664..7117+ (Himanthalia elongata Himel1 dioecious)
GGGACTGCACAACGCACGCGACATCACGCGCGGAGCATTATGCACGGCGA
GGGTGGAGCGCGGGGTGACACGGTACCAAAAGCCGTCGCGGCGGGGCTGT
TGGGAGTCCAGCTCTTGGGGATGCCGATCGCTGTAGTCGCCAGGCAAGCT
ACTGTCGCGGGCGTGGCGCTCCCGCGGTTCGAGCTGGTCACGGCGGGGGC
TAGAGTGGCGGCGCCGAGGTCTCCGCGCACGATAGAGGAAGAGATGATCG
GGGACTGCACAACGCACGCGACATCACGCGCGGAGCATTATGCACGGCGA
GGGTGGAGCGCGGGGTGACACGGTACCAAAAGCCGTCGCGGCGGGGCTGT
TGGGAGTCCAGCTCTTGGGGATGCCGATCGCTGTAGTCGCCAGGCAAGCT
ACTGTCGCGGGCGTGGCGCTCCCGCGGTTCGAGCTGGTCACGGCGGGGGC
TAGAGTGGCGGCGCCGAGGTCTCCGCGCACGATAGAGGAAGAGATGATCG
ATGAGGTCGAGAAGTTCGAGCGCCAGTTCGAGGTGGAAGGCAACCTGAAG
AAGCAGTCAAATGTCAAGCCGTATGAGGTCGAGAAGTTCGAGCGCCAGTT
CGAGGTGGAAGGCAACCTGAAGAAGCAGTCAAATGTCAAGCCGTCCCCCC
TGCCAGACGTGCTCAAGCCTCCCAAAAAAGGACAAGAATCCCCTCGTGTC
AAGCTCGTGGAGATACCTAACGAAAGGCTTGAGAAATCGGTGCAAACCAT
CCAAGGGCTCTCTCCCTACTTGGCCCCCCTGCCAGACGTGCTCAAGCCTC
CCAAAAAAGGACAAGAATCCCCTCGTGTCAAGCTCGTGGAGATACCTAAC
GAAAGGCTTGAGAAATCGGTGCAAACCATCCAAGGGCTCTCTCCCTACTT
GGACGAGGTGGAGTACTTGATCACCGCGCGGAAGTGGGAGTACCTCAAGG
GGTTCCTCGGCGTATTCGGGTCTTGTGAGGAAGATTTTGTCAATTTGATC
GACGGTATGTACCCGACGGAGAAGCCGGTGGACATCAGCTCCAGAGACTC
GATGCAGCTGGAAGCACAGAACGTATTTCTCGCCGTGGATGACTTGTATC
AGACGAGGTGGAGTACTTGATCACCGCGCGGAAGTGGGAGTACCTCAAGG
GGTTCCTCGGCGTATTCGGGTCTTGTGAGGAAGATTTTGTCAATTTGATC
GACGGTATGTACCCGACGGAGAAGCCGGTGGACATCAGCTCCAGAGACTC
GATGCAGCTGGAAGCACAGAACGTATTTCTCGCCGTGGATGACTTGTATC
AGGCTTCGATTTCGAAGAAAGTGAAAGGGGCCGAGAAAGCGTTTGTCAAG
CTGGCGCTGGCTTATGATCGCTTCATCAAAGCTGGTAACATCCTTTCTGT
GCTTCGATTTCGAAGAAAGTGAAAGGGGCCGAGAAAGCGTTTGTCAAGCT
GGCGCTGGCTTATGATCGCTTCATCAAAGCTGGTAACATCCTTTCTGTCT
ATGATCCGGTGTCCTCTACGGAGAAGTTCTTCAACGACATCCCCGACGAG
ATGCTGCGCTACGAACGGGACTCGAAGGCCCCGCTTGAAGTTCGCGATGC
GCTATGATCCGGTGTCCTCTACGGAGAAGTTCTTCAACGACATCCCCGAC
GAGATGCTGCGCTACGAACGGGACTCGAAGGCCCCGCTTGAAGTTCGCGA
TGCGGTGCTCATTCTCAAGGGCCCGGACATGGGGCGCACGGGAAAGATAG
TGGGCATAATCAAAAGCCGAAGCGAGGCAATCGTTAGGGTTGACGGAAGA
ACACGAGAGATGCGCATCCTGGAGCTGTCGGATATCGCCCGACAGCTGCC
TGACGACCCCAAGGTGCTCATTCTCAAGGGCCCGGACATGGGGCGCACGG
GAAAGATAGTGGGCATAATCAAAAGCCGAAGCGAGGCAATCGTTAGGGTT
GACGGAAGAACACGAGAGATGCGCATCCTGGAGCTGTCGGATATCGCCCG
ACAGCTGCCTGACGACCCCAAG
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