mRNA_H-elongata_contig181868.4872.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig181868.4872.1
Unique NamemRNA_H-elongata_contig181868.4872.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig181868.4872.1 vs. uniprot
Match: A0A7R9WYA7_9STRA (Serine hydroxymethyltransferase n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WYA7_9STRA)

HSP 1 Score: 152 bits (383), Expect = 2.940e-42
Identity = 72/81 (88.89%), Postives = 76/81 (93.83%), Query Frame = 1
Query:    1 LNLHKNSGSPANFAVYTGLLRPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFESLPYRVSPETGLIDHENLA 243
            +N+   SGSPANFAVYTGLLRPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFESLPYRV PETGLID++ LA
Sbjct:  102 VNVQPYSGSPANFAVYTGLLRPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFESLPYRVHPETGLIDYDQLA 182          
BLAST of mRNA_H-elongata_contig181868.4872.1 vs. uniprot
Match: D8LFD6_ECTSI (Serine hydroxymethyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFD6_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 2.070e-41
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 1
Query:    1 LNLHKNSGSPANFAVYTGLLRPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFESLPYRVSPETGLIDHENLA 243
            +N+   SGSPANFA YT LLRPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFESLPYRV P+TGLIDH++LA
Sbjct:  103 VNVQPYSGSPANFAAYTALLRPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFESLPYRVHPDTGLIDHDDLA 183          
BLAST of mRNA_H-elongata_contig181868.4872.1 vs. uniprot
Match: A0A1E7EPI0_9STRA (Serine hydroxymethyltransferase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EPI0_9STRA)

HSP 1 Score: 149 bits (376), Expect = 2.950e-41
Identity = 69/81 (85.19%), Postives = 74/81 (91.36%), Query Frame = 1
Query:    1 LNLHKNSGSPANFAVYTGLLRPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFESLPYRVSPETGLIDHENLA 243
            +N+   SGSPANFAVYTGLL+PHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFES PYRV PETG +DH+ LA
Sbjct:  102 VNVQPYSGSPANFAVYTGLLKPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFESFPYRVHPETGYVDHDGLA 182          
BLAST of mRNA_H-elongata_contig181868.4872.1 vs. uniprot
Match: A0A7S3LGM3_9STRA (Serine hydroxymethyltransferase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LGM3_9STRA)

HSP 1 Score: 149 bits (375), Expect = 4.060e-41
Identity = 69/80 (86.25%), Postives = 75/80 (93.75%), Query Frame = 1
Query:    1 LNLHKNSGSPANFAVYTGLLRPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFESLPYRVSPETGLIDHENL 240
            +N+   SGSPANFAVYTGLL+PHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATS+YFESLPYRV PETGLID++ L
Sbjct:  102 VNVQPYSGSPANFAVYTGLLKPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSIYFESLPYRVHPETGLIDYDQL 181          
BLAST of mRNA_H-elongata_contig181868.4872.1 vs. uniprot
Match: A0A7S2MVH6_9STRA (Serine hydroxymethyltransferase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MVH6_9STRA)

HSP 1 Score: 149 bits (375), Expect = 4.740e-41
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 1
Query:    1 LNLHKNSGSPANFAVYTGLLRPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFESLPYRVSPETGLIDHENLA 243
            +N+   SGSPANFAVYT LLRPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFESLPYRV PETG+ID+E L+
Sbjct:  115 VNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFESLPYRVHPETGIIDYEQLS 195          
BLAST of mRNA_H-elongata_contig181868.4872.1 vs. uniprot
Match: A0A6A4ZDN9_9STRA (Serine hydroxymethyltransferase (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZDN9_9STRA)

HSP 1 Score: 144 bits (362), Expect = 1.690e-40
Identity = 69/81 (85.19%), Postives = 72/81 (88.89%), Query Frame = 1
Query:    1 LNLHKNSGSPANFAVYTGLLRPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFESLPYRVSPETGLIDHENLA 243
            +N+   SGSPANFAVYT LLRPHDRIMGLDLPSGGHLTHGFYTYSK E TRKAVSATSVYFESLPYRV PETGLID + LA
Sbjct:   96 VNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYSKAENTRKAVSATSVYFESLPYRVHPETGLIDFDKLA 176          
BLAST of mRNA_H-elongata_contig181868.4872.1 vs. uniprot
Match: A0A5D6XJP3_9STRA (Serine hydroxymethyltransferase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJP3_9STRA)

HSP 1 Score: 146 bits (368), Expect = 3.830e-40
Identity = 70/81 (86.42%), Postives = 74/81 (91.36%), Query Frame = 1
Query:    1 LNLHKNSGSPANFAVYTGLLRPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFESLPYRVSPETGLIDHENLA 243
            +N+   SGSPANFAVYT LLRPHDRIMGLDLPSGGHLTHGFYTYSK E TRKAVSATSVYFESLPYRVSPETGLID ++LA
Sbjct:   96 VNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYSKAENTRKAVSATSVYFESLPYRVSPETGLIDFDSLA 176          
BLAST of mRNA_H-elongata_contig181868.4872.1 vs. uniprot
Match: A0A2D4BP20_PYTIN (Serine hydroxymethyltransferase n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BP20_PYTIN)

HSP 1 Score: 145 bits (366), Expect = 7.270e-40
Identity = 70/81 (86.42%), Postives = 74/81 (91.36%), Query Frame = 1
Query:    1 LNLHKNSGSPANFAVYTGLLRPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFESLPYRVSPETGLIDHENLA 243
            +N+   SGSPANFAVYTGLLRPHDRIMGLDLPSGGHLTHGFYTYSK E TRKAVSATSVYFESLPYRVSP+TGLID + LA
Sbjct:   96 VNVQPYSGSPANFAVYTGLLRPHDRIMGLDLPSGGHLTHGFYTYSKAEKTRKAVSATSVYFESLPYRVSPQTGLIDFDALA 176          
BLAST of mRNA_H-elongata_contig181868.4872.1 vs. uniprot
Match: A0A7S4IQ68_9STRA (Serine hydroxymethyltransferase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IQ68_9STRA)

HSP 1 Score: 145 bits (366), Expect = 7.970e-40
Identity = 69/81 (85.19%), Postives = 73/81 (90.12%), Query Frame = 1
Query:    1 LNLHKNSGSPANFAVYTGLLRPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFESLPYRVSPETGLIDHENLA 243
            +N+   SGSPANFAVYTGLLRPHDRIMGLDLPSGGHLTHGFYTYSKKE TRKAVSATSVYFES PYRV PETG ID++ LA
Sbjct:  102 VNVQPYSGSPANFAVYTGLLRPHDRIMGLDLPSGGHLTHGFYTYSKKEKTRKAVSATSVYFESFPYRVHPETGYIDYDKLA 182          
BLAST of mRNA_H-elongata_contig181868.4872.1 vs. uniprot
Match: A0A836CHR3_9STRA (Glycine hydroxymethyltransferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHR3_9STRA)

HSP 1 Score: 145 bits (366), Expect = 8.100e-40
Identity = 69/80 (86.25%), Postives = 73/80 (91.25%), Query Frame = 1
Query:    1 LNLHKNSGSPANFAVYTGLLRPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFESLPYRVSPETGLIDHENL 240
            +N+   SGSPANFAVYTGLLRPHDRIMGLDLPSGGHLTHGFYTYSK E TRKAVSATSVYFESLPYRV+PETGLID + L
Sbjct:  101 VNVQPYSGSPANFAVYTGLLRPHDRIMGLDLPSGGHLTHGFYTYSKAENTRKAVSATSVYFESLPYRVNPETGLIDFDEL 180          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig181868.4872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9WYA7_9STRA2.940e-4288.89Serine hydroxymethyltransferase n=2 Tax=Craspedost... [more]
D8LFD6_ECTSI2.070e-4186.42Serine hydroxymethyltransferase n=2 Tax=Ectocarpus... [more]
A0A1E7EPI0_9STRA2.950e-4185.19Serine hydroxymethyltransferase n=1 Tax=Fragilario... [more]
A0A7S3LGM3_9STRA4.060e-4186.25Serine hydroxymethyltransferase n=1 Tax=Amphora co... [more]
A0A7S2MVH6_9STRA4.740e-4186.42Serine hydroxymethyltransferase n=1 Tax=Helicothec... [more]
A0A6A4ZDN9_9STRA1.690e-4085.19Serine hydroxymethyltransferase (Fragment) n=1 Tax... [more]
A0A5D6XJP3_9STRA3.830e-4086.42Serine hydroxymethyltransferase n=1 Tax=Pythium br... [more]
A0A2D4BP20_PYTIN7.270e-4086.42Serine hydroxymethyltransferase n=2 Tax=Pythium Ta... [more]
A0A7S4IQ68_9STRA7.970e-4085.19Serine hydroxymethyltransferase n=1 Tax=Odontella ... [more]
A0A836CHR3_9STRA8.100e-4086.25Glycine hydroxymethyltransferase n=2 Tax=Tribonema... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig181868contigH-elongata_contig181868:2..784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.4
Seed ortholog evalue5.9e-33
Seed eggNOG ortholog115417.EPrPW00000017840
Preferred nameSHMT-L
KEGG rclassRC00022,RC00112,RC01583,RC02958
KEGG koko:K00600
KEGG ReactionR00945,R09099
KEGG Pathwayko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523
KEGG ModuleM00140,M00141,M00346,M00532
EggNOG free text desc.Serine hydroxymethyltransferase. Source PGD
EggNOG OGs1MFHT@121069,COG0112@1,KOG2467@2759
EC2.1.2.1
COG Functional cat.E
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930047.7961066-CDS-H-elongata_contig181868:1..441622930047.7961066-CDS-H-elongata_contig181868:1..44Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181868 2..44 -
1691679260.4624343-CDS-H-elongata_contig181868:1..441691679260.4624343-CDS-H-elongata_contig181868:1..44Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181868 2..44 -
1622930047.8149788-CDS-H-elongata_contig181868:584..7841622930047.8149788-CDS-H-elongata_contig181868:584..784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181868 585..784 -
1691679260.4742157-CDS-H-elongata_contig181868:584..7841691679260.4742157-CDS-H-elongata_contig181868:584..784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181868 585..784 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig181868.4872.1prot_H-elongata_contig181868.4872.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig181868 2..784 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig181868.4872.1

>prot_H-elongata_contig181868.4872.1 ID=prot_H-elongata_contig181868.4872.1|Name=mRNA_H-elongata_contig181868.4872.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
LNLHKNSGSPANFAVYTGLLRPHDRIMGLDLPSGGHLTHGFYTYSKKEGT
RKAVSATSVYFESLPYRVSPETGLIDHENLA
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mRNA from alignment at H-elongata_contig181868:2..784-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig181868.4872.1 ID=mRNA_H-elongata_contig181868.4872.1|Name=mRNA_H-elongata_contig181868.4872.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=783bp|location=Sequence derived from alignment at H-elongata_contig181868:2..784- (Himanthalia elongata Himel1 dioecious)
CTCAATCTTCACAAAAACAGCGGCTCTCCGGCGAACTTCGCCGTGTACAC GGGGTTGCTGAGGCCACACGATCGCATCATGGGGCTCGACCTTCCCTCTG GTGGCCACCTGACACACGGCTTCTACACATACTCGAAGAAGGAAGGGACC CGGAAGGCCGTGTCGGCGACGTCTGTGTACTTCGAGTCCTTGCCTTACCG GTGTGTTTTTTGTTATTCCTCTTCGAGTCCTTGCCCTAGTCCTTAATACA GTATATACTAATGATATCAACAGAAGCACTGAAGAACTAACATTCGCCGT GCCCAGCCTTCTCAAGGCACGAAGTTGGCTGGCAGAGGCTGACAAATTGC TCATGAAGGAATCACATGATCACACGGTGTGTTGATTGTTAGTATGACTC GTCGATCTCAGATATATGCTATGCTATGTTGTGCTAGCGTTCTACAAGGC ACTGTCACTTTTGATTATCTTGTTCTTGCAGATCGCACTATCGCTATCGC TGTTCGAAGAATATATTATATGGTATATAGTGTATACTGCATACCAGGGT ACTACATAATGTATACTAAATATTAAAGAGTACAGCCATGAACTTTCTCA CTTGACTATACTAGTATGATACGGCAGTAATATAGTACATAGTACTACTC TAGTACTCGTGACAAAGTTGTAGCGCAATTGTTTTCATCTCCTCTCGCGG CCCTTTTTCATTCACTTCTCTTCCCTTCCCTTCCCTCTAGCGTCAGCCCC GAGACTGGCCTTATCGACCATGAAAACTTGGCC
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Coding sequence (CDS) from alignment at H-elongata_contig181868:2..784-

>mRNA_H-elongata_contig181868.4872.1 ID=mRNA_H-elongata_contig181868.4872.1|Name=mRNA_H-elongata_contig181868.4872.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig181868:2..784- (Himanthalia elongata Himel1 dioecious)
CTCAATCTTCACAAAAACAGCGGCTCTCCGGCGAACTTCGCCGTGTACAC
GGGGTTGCTGAGGCCACACGATCGCATCATGGGGCTCGACCTTCCCTCTG
GTGGCCACCTGACACACGGCTTCTACACATACTCGAAGAAGGAAGGGACC
CGGAAGGCCGTGTCGGCGACGTCTGTGTACTTCGAGTCCTTGCCTTACCG
CTCAATCTTCACAAAAACAGCGGCTCTCCGGCGAACTTCGCCGTGTACAC
GGGGTTGCTGAGGCCACACGATCGCATCATGGGGCTCGACCTTCCCTCTG
GTGGCCACCTGACACACGGCTTCTACACATACTCGAAGAAGGAAGGGACC
CGGAAGGCCGTGTCGGCGACGTCTGTGTACTTCGAGTCCTTGCCTTACCG
CGTCAGCCCCGAGACTGGCCTTATCGACCATGAAAACTTGGCCCGTCAGC
CCCGAGACTGGCCTTATCGACCATGAAAACTTGGCC
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