mRNA_H-elongata_contig1818.4869.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1818.4869.1
Unique NamemRNA_H-elongata_contig1818.4869.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig1818.4869.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 8.520e-32
Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = 1 
Query:   16 VCPVRAILDSGSGVTVMSEEIARKLPYRFPEVEIVRGMNVPQYVKVADGRAVEVTQKTCPVRIALHTNWGPVALDPFSFVVIPGTDDVVIVGSPTLAAMGINPY 327
            VCP   ILDSG+G+T MS  +A+KL  + P+V +V   + P  VK  +GR V VT+KTCPVR+ +HT WGPV LDP +F V+PGTDDVVI+G PTL  +GI+ Y
Sbjct:  425 VCPAVGILDSGAGLTAMSASVAQKLQKKCPDVSVVVSTDHPHQVKTVEGRLVTVTEKTCPVRMTIHTQWGPVVLDPRAFAVMPGTDDVVIIGDPTLTKLGIDVY 528
[Close]
BLAST of mRNA_H-elongata_contig1818.4869.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.160e-31
Identity = 61/99 (61.62%), Postives = 78/99 (78.79%), Query Frame = 1 
Query:   31 AILDSGSGVTVMSEEIARKLPYRFPEVEIVRGMNVPQYVKVADGRAVEVTQKTCPVRIALHTNWGPVALDPFSFVVIPGTDDVVIVGSPTLAAMGINPY 327
            AILD GSG+T MS  IA +L   FP+V++V GM  P  +KVADGR + VTQKTCPV+IALHT+WG V++DP SF V+PG D+VVI+G+PTL A+GI+ Y
Sbjct:  538 AILDPGSGLTTMSAGIASRLQAAFPDVQVVGGMQNPGKLKVADGRVLAVTQKTCPVQIALHTSWGLVSVDPLSFAVMPGNDEVVILGNPTLKALGIDVY 636
[Close]
BLAST of mRNA_H-elongata_contig1818.4869.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.560e-24
Identity = 48/88 (54.55%), Postives = 63/88 (71.59%), Query Frame = 1 
Query:   64 MSEEIARKLPYRFPEVEIVRGMNVPQYVKVADGRAVEVTQKTCPVRIALHTNWGPVALDPFSFVVIPGTDDVVIVGSPTLAAMGINPY 327
            MS  +A+KL  + P+V +V   + P  VK  +GR V VT+KTCPVR+ +HT WGPV LDP +F V+PGTDDVVI+G PTL  +GI+ Y
Sbjct:    1 MSASVAQKLQKKCPDVSVVVSTDHPHQVKTVEGRLVTVTEKTCPVRMTIHTQWGPVVLDPRAFAVMPGTDDVVIIGDPTLTKLGIDVY 88
[Close]
BLAST of mRNA_H-elongata_contig1818.4869.1 vs. uniprot
Match: A0A6H5KQ00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ00_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.980e-22
Identity = 49/84 (58.33%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:   76 IARKLPYRFPEVEIVRGMNVPQYVKVADGRAVEVTQKTCPVRIALHTNWGPVALDPFSFVVIPGTDDVVIVGSPTLAAMGINPY 327
            IA +L    P+V++VRGM  P  +KVADGR +EVTQKTCPVRIALH +WG V++D FSF V+ G   VVI+G+PT  A+GI+ Y
Sbjct:  234 IASRLQAAVPDVQVVRGMKNPGKLKVADGRVLEVTQKTCPVRIALHASWGLVSVDLFSFAVMLGDGQVVILGNPTPKALGIDVY 317
[Close]
BLAST of mRNA_H-elongata_contig1818.4869.1 vs. uniprot
Match: A0A6H5JCK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK9_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.000e-18
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:  121 RGMNVPQYVKVADGRAV-EVTQKTCPVRIALHTNWGPVALDPFSFVVIPGTDDVVIVGSPTLAAMGINPY 327
            RG   P  +KVADGR V EV QKTCPVRIALHT+WG V++DPFS  V+ G D+VVI+G+PTL A+GI+ Y
Sbjct:  341 RGHTKPGELKVADGRRVLEVIQKTCPVRIALHTSWGLVSVDPFSLAVMTGNDEVVILGNPTLKALGIDVY 410
[Close]
BLAST of mRNA_H-elongata_contig1818.4869.1 vs. uniprot
Match: A0A6H5L1I2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1I2_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.610e-12
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:  163 RAVEVTQKTCPVRIALHTNWGPVALDPFSFVVIPGTDDVVIVGSPTLAAMGINPY 327
            R V  T K CP+R+ALHT WGPV L+PF F V+PG DD +++G  TL  +GI+ Y
Sbjct:  353 RTVPTTNKACPLRLALHTEWGPVVLEPFRFSVMPGEDDTILLGGATLKKLGIDVY 407
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1818.4869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L7F6_9PHAE8.520e-3255.77Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE1.160e-3161.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCX8_9PHAE1.560e-2454.55Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KQ00_9PHAE1.980e-2258.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCK9_9PHAE1.000e-1864.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1I2_9PHAE1.610e-1254.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1818contigH-elongata_contig1818:11171..11506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930047.626316-CDS-H-elongata_contig1818:11170..115061622930047.626316-CDS-H-elongata_contig1818:11170..11506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1818 11171..11506 -
1691679260.4020357-CDS-H-elongata_contig1818:11170..115061691679260.4020357-CDS-H-elongata_contig1818:11170..11506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1818 11171..11506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1818.4869.1prot_H-elongata_contig1818.4869.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1818 11171..11506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1818.4869.1

>prot_H-elongata_contig1818.4869.1 ID=prot_H-elongata_contig1818.4869.1|Name=mRNA_H-elongata_contig1818.4869.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
AKFSGVCPVRAILDSGSGVTVMSEEIARKLPYRFPEVEIVRGMNVPQYVK
VADGRAVEVTQKTCPVRIALHTNWGPVALDPFSFVVIPGTDDVVIVGSPT
LAAMGINPYAP*
back to top

mRNA from alignment at H-elongata_contig1818:11171..11506-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1818.4869.1 ID=mRNA_H-elongata_contig1818.4869.1|Name=mRNA_H-elongata_contig1818.4869.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=336bp|location=Sequence derived from alignment at H-elongata_contig1818:11171..11506- (Himanthalia elongata Himel1 dioecious)
GCTAAATTTTCGGGCGTGTGCCCAGTGAGAGCTATTCTTGACTCGGGGTC
GGGGGTTACGGTGATGTCGGAAGAAATCGCGAGAAAATTACCGTATAGGT
TTCCTGAAGTCGAGATTGTGCGGGGAATGAATGTTCCGCAGTACGTTAAG
GTCGCTGATGGGCGTGCTGTAGAGGTAACACAAAAAACGTGCCCCGTAAG
AATCGCGTTGCACACTAATTGGGGACCGGTGGCATTAGACCCGTTTTCTT
TTGTGGTCATCCCTGGAACTGATGACGTAGTAATCGTTGGAAGTCCTACT
TTAGCTGCAATGGGCATCAATCCGTATGCGCCATGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig1818:11171..11506-

>mRNA_H-elongata_contig1818.4869.1 ID=mRNA_H-elongata_contig1818.4869.1|Name=mRNA_H-elongata_contig1818.4869.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig1818:11171..11506- (Himanthalia elongata Himel1 dioecious)
GCTAAATTTTCGGGCGTGTGCCCAGTGAGAGCTATTCTTGACTCGGGGTC
GGGGGTTACGGTGATGTCGGAAGAAATCGCGAGAAAATTACCGTATAGGT
TTCCTGAAGTCGAGATTGTGCGGGGAATGAATGTTCCGCAGTACGTTAAG
GTCGCTGATGGGCGTGCTGTAGAGGTAACACAAAAAACGTGCCCCGTAAG
AATCGCGTTGCACACTAATTGGGGACCGGTGGCATTAGACCCGTTTTCTT
TTGTGGTCATCCCTGGAACTGATGACGTAGTAATCGTTGGAAGTCCTACT
TTAGCTGCAATGGGCATCAATCCGTATGCGCCATGAGCTAAATTTTCGGG
CGTGTGCCCAGTGAGAGCTATTCTTGACTCGGGGTCGGGGGTTACGGTGA
TGTCGGAAGAAATCGCGAGAAAATTACCGTATAGGTTTCCTGAAGTCGAG
ATTGTGCGGGGAATGAATGTTCCGCAGTACGTTAAGGTCGCTGATGGGCG
TGCTGTAGAGGTAACACAAAAAACGTGCCCCGTAAGAATCGCGTTGCACA
CTAATTGGGGACCGGTGGCATTAGACCCGTTTTCTTTTGTGGTCATCCCT
GGAACTGATGACGTAGTAATCGTTGGAAGTCCTACTTTAGCTGCAATGGG
CATCAATCCGTATGCGCCATGA
back to top