mRNA_H-elongata_contig181792.4867.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig181792.4867.1 vs. uniprot
Match: A0A6H5L8A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8A7_9PHAE) HSP 1 Score: 218 bits (555), Expect = 1.040e-67 Identity = 109/176 (61.93%), Postives = 133/176 (75.57%), Query Frame = 1
Query: 1 MDIFLPPAGGSSAFSVKTCGEPTCPMKSAPISGVHQCPCGRAMHGFRGRGIGADGYGQQRECTDCQKRTAREKAGTSTEMVAKLAAFIEDWDTVRARKIRRGCRGLNDAGQATMLDVVEILSEKWSGLSDQTVVRCWLKADILPREHQNALKGKDLRLDREDDGDKAIIDELCGLV 528
M+ FLP AG SSA ++ CGEPTC KS +S VHQCPCGR+MH F GRGIG +GYGQQREC+DCQK ++AG+S+ + ++ A + D+ RRGCRGL+DAGQATMLDV EILS+KW SDQTVVRCWLKA ILPREH+NALKG+D RLDRED + A +D+LC +V
Sbjct: 1 MERFLPSAGESSAAGLRPCGEPTCQQKSQLVSAVHQCPCGRSMHAFCGRGIGEEGYGQQRECSDCQKSKGGDQAGSSSSPM-EVDAEENEQDS------RRGCRGLSDAGQATMLDVTEILSQKWESFSDQTVVRCWLKATILPREHENALKGRDTRLDREDK-EAAALDDLCDMV 168
BLAST of mRNA_H-elongata_contig181792.4867.1 vs. uniprot
Match: A0A6H5JEY2_9PHAE (HTH CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY2_9PHAE) HSP 1 Score: 162 bits (411), Expect = 3.200e-44 Identity = 79/104 (75.96%), Postives = 86/104 (82.69%), Query Frame = 1
Query: 217 KAGTSTEMVAKLAAFIEDWDTVRARKIRRGCRGLNDAGQATMLDVVEILSEKWSGLSDQTVVRCWLKADILPREHQNALKGKDLRLDREDDGDKAIIDELCGLV 528
K TEMVA+LA I+ WD VRARKIRRGCRGLNDAGQATMLDV EILSEKW S QTV+RCWLKA+ILPREH+NALKGKD RLDRED D AIID+LC +V
Sbjct: 287 KCQYKTEMVARLADLIDVWDAVRARKIRRGCRGLNDAGQATMLDVTEILSEKWESFSSQTVIRCWLKANILPREHENALKGKDTRLDREDKEDTAIIDDLCEMV 390
BLAST of mRNA_H-elongata_contig181792.4867.1 vs. uniprot
Match: A0A6H5JV64_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV64_9PHAE) HSP 1 Score: 162 bits (411), Expect = 1.340e-43 Identity = 79/104 (75.96%), Postives = 86/104 (82.69%), Query Frame = 1
Query: 217 KAGTSTEMVAKLAAFIEDWDTVRARKIRRGCRGLNDAGQATMLDVVEILSEKWSGLSDQTVVRCWLKADILPREHQNALKGKDLRLDREDDGDKAIIDELCGLV 528
K TEMVA+LA I+ WD VRARKIRRGCRGLNDAGQATMLDV EILSEKW S QTV+RCWLKA+ILPREH+NALKGKD RLDRED D AIID+LC +V
Sbjct: 492 KCQYKTEMVARLADLIDVWDAVRARKIRRGCRGLNDAGQATMLDVTEILSEKWESFSSQTVIRCWLKANILPREHENALKGKDTRLDREDKEDTAIIDDLCEMV 595
BLAST of mRNA_H-elongata_contig181792.4867.1 vs. uniprot
Match: A0A6H5L2W8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W8_9PHAE) HSP 1 Score: 147 bits (371), Expect = 2.400e-41 Identity = 72/104 (69.23%), Postives = 81/104 (77.88%), Query Frame = 1
Query: 217 KAGTSTEMVAKLAAFIEDWDTVRARKIRRGCRGLNDAGQATMLDVVEILSEKWSGLSDQTVVRCWLKADILPREHQNALKGKDLRLDREDDGDKAIIDELCGLV 528
K TEMVA+LA IEDWDTVRARK++RGCRGL+DAGQATML+V EI S+KW L QTV+RCWLKA ILPRE N LKG D RLDRED D A+ID LC +V
Sbjct: 12 KCQYKTEMVARLAELIEDWDTVRARKVQRGCRGLSDAGQATMLNVTEICSQKWRRLDVQTVIRCWLKAGILPREDCNVLKGMDTRLDREDKDDAAVIDGLCDMV 115
BLAST of mRNA_H-elongata_contig181792.4867.1 vs. uniprot
Match: A0A6H5KSV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV5_9PHAE) HSP 1 Score: 142 bits (358), Expect = 6.530e-40 Identity = 71/104 (68.27%), Postives = 81/104 (77.88%), Query Frame = 1
Query: 217 KAGTSTEMVAKLAAFIEDWDTVRARKIRRGCRGLNDAGQATMLDVVEILSEKWSGLSDQTVVRCWLKADILPREHQNALKGKDLRLDREDDGDKAIIDELCGLV 528
K TEMV +LAA IEDWDT RA KIRRG RGLNDAGQ TMLDV EI S+KW +SDQTV+RCWLKA ILP EH++ALK KD RLD+ED G A +D+LC +V
Sbjct: 10 KCQYKTEMVMRLAALIEDWDTARALKIRRGYRGLNDAGQPTMLDVTEIPSQKWESVSDQTVIRCWLKATILPGEHESALKDKDTRLDQEDPG-AASLDDLCDMV 112
BLAST of mRNA_H-elongata_contig181792.4867.1 vs. uniprot
Match: A0A6H5KIE7_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE7_9PHAE) HSP 1 Score: 144 bits (364), Expect = 9.300e-39 Identity = 71/104 (68.27%), Postives = 79/104 (75.96%), Query Frame = 1
Query: 217 KAGTSTEMVAKLAAFIEDWDTVRARKIRRGCRGLNDAGQATMLDVVEILSEKWSGLSDQTVVRCWLKADILPREHQNALKGKDLRLDREDDGDKAIIDELCGLV 528
K TEMVA+LA IEDWDTVRARK +RGC+GL+DAGQATMLDV EI S+KW QTV+ CWLKA ILPREH N LKG D R+DRED D AIID LC +V
Sbjct: 121 KCRYKTEMVARLADLIEDWDTVRARKFQRGCQGLSDAGQATMLDVTEIGSQKWRSFDVQTVITCWLKAGILPREHCNVLKGMDTRVDREDKDDAAIIDGLCDMV 224
BLAST of mRNA_H-elongata_contig181792.4867.1 vs. uniprot
Match: A0A6H5JNS8_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS8_9PHAE) HSP 1 Score: 148 bits (374), Expect = 1.020e-38 Identity = 73/103 (70.87%), Postives = 79/103 (76.70%), Query Frame = 1
Query: 217 KAGTSTEMVAKLAAFIEDWDTVRARKIRRGCRGLNDAGQATMLDVVEILSEKWSGLSDQTVVRCWLKADILPREHQNALKGKDLRLDREDDGDKAIIDELCGL 525
K TEMVA+LA IEDWDTVRARKI+RGCRGL+DAGQATMLDV EI S+KW QTV+RCWLKA ILPREH LKG D RLDRED D AIID LC +
Sbjct: 324 KCQYKTEMVARLADLIEDWDTVRARKIQRGCRGLSDAGQATMLDVTEICSQKWRSFDVQTVIRCWLKAGILPREHCKVLKGMDTRLDREDKDDAAIIDGLCDM 426
BLAST of mRNA_H-elongata_contig181792.4867.1 vs. uniprot
Match: A0A6H5JLK3_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLK3_9PHAE) HSP 1 Score: 144 bits (363), Expect = 6.860e-38 Identity = 70/104 (67.31%), Postives = 80/104 (76.92%), Query Frame = 1
Query: 217 KAGTSTEMVAKLAAFIEDWDTVRARKIRRGCRGLNDAGQATMLDVVEILSEKWSGLSDQTVVRCWLKADILPREHQNALKGKDLRLDREDDGDKAIIDELCGLV 528
K TEMV +LAA IEDWDT RAR+IR GCRGLNDAGQ TMLDV E+LS+KW SDQTV+RCWLKA I P EH++ALK D RLDRED G A+ D+LC +V
Sbjct: 210 KCQYKTEMVMRLAALIEDWDTARARQIRTGCRGLNDAGQPTMLDVTEVLSQKWESFSDQTVIRCWLKATIRPGEHESALKDNDTRLDREDPGATAL-DDLCDMV 312
BLAST of mRNA_H-elongata_contig181792.4867.1 vs. uniprot
Match: A0A6H5KXD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXD1_9PHAE) HSP 1 Score: 140 bits (352), Expect = 8.200e-38 Identity = 69/99 (69.70%), Postives = 76/99 (76.77%), Query Frame = 1
Query: 232 TEMVAKLAAFIEDWDTVRARKIRRGCRGLNDAGQATMLDVVEILSEKWSGLSDQTVVRCWLKADILPREHQNALKGKDLRLDREDDGDKAIIDELCGLV 528
TEMV +LA IEDWDTVRARKI+ CRGLNDAGQATMLDV EI S+KW QTV+RCWLKA ILPREH N LK D RLDRED + AI+D LC +V
Sbjct: 15 TEMVERLADLIEDWDTVRARKIQGECRGLNDAGQATMLDVTEICSQKWRSFDVQTVIRCWLKAGILPREHCNVLKCMDTRLDREDKDNVAIVDGLCDMV 113
BLAST of mRNA_H-elongata_contig181792.4867.1 vs. uniprot
Match: A0A6H5JEK6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK6_9PHAE) HSP 1 Score: 139 bits (350), Expect = 2.160e-35 Identity = 67/98 (68.37%), Postives = 76/98 (77.55%), Query Frame = 1
Query: 235 EMVAKLAAFIEDWDTVRARKIRRGCRGLNDAGQATMLDVVEILSEKWSGLSDQTVVRCWLKADILPREHQNALKGKDLRLDREDDGDKAIIDELCGLV 528
E +A+LA IEDWDTVRARKI+RGC+G +DAGQAT+LDV EI S+KW QTV+RCWLKA ILP EH N KG D RLDRED GD AIID LC +V
Sbjct: 466 EKMARLADLIEDWDTVRARKIQRGCQGFSDAGQATVLDVTEICSQKWRSFDVQTVIRCWLKAGILPTEHCNVPKGMDTRLDREDKGDVAIIDGLCDMV 563 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig181792.4867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig181792.4867.1 >prot_H-elongata_contig181792.4867.1 ID=prot_H-elongata_contig181792.4867.1|Name=mRNA_H-elongata_contig181792.4867.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp MDIFLPPAGGSSAFSVKTCGEPTCPMKSAPISGVHQCPCGRAMHGFRGRGback to top mRNA from alignment at H-elongata_contig181792:4..777- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig181792.4867.1 ID=mRNA_H-elongata_contig181792.4867.1|Name=mRNA_H-elongata_contig181792.4867.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=774bp|location=Sequence derived from alignment at H-elongata_contig181792:4..777- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig181792:4..777- >mRNA_H-elongata_contig181792.4867.1 ID=mRNA_H-elongata_contig181792.4867.1|Name=mRNA_H-elongata_contig181792.4867.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1056bp|location=Sequence derived from alignment at H-elongata_contig181792:4..777- (Himanthalia elongata Himel1 dioecious)back to top |