mRNA_H-elongata_contig181765.4866.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig181765.4866.1
Unique NamemRNA_H-elongata_contig181765.4866.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig181765.4866.1 vs. uniprot
Match: D7FY57_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY57_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 4.540e-17
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:   22 KELRLADHFPLVHKTCKKPAAKFFDCFSEKGDQPPEG 132
            +ELRLADHFPLVHK+CKKPAA FF+CFSEK DQPPEG
Sbjct:    4 EELRLADHFPLVHKSCKKPAASFFECFSEKADQPPEG 40
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig181765.4866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FY57_ECTSI4.540e-1786.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig181765contigH-elongata_contig181765:208..351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_003710.1
Exons1
Model size144
Cds size144
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930047.4319332-CDS-H-elongata_contig181765:207..3511622930047.4319332-CDS-H-elongata_contig181765:207..351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181765 208..351 -
1691679260.3491266-CDS-H-elongata_contig181765:207..3511691679260.3491266-CDS-H-elongata_contig181765:207..351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181765 208..351 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig181765.4866.1prot_H-elongata_contig181765.4866.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig181765 208..351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig181765.4866.1

>prot_H-elongata_contig181765.4866.1 ID=prot_H-elongata_contig181765.4866.1|Name=mRNA_H-elongata_contig181765.4866.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
MAAASGAKELRLADHFPLVHKTCKKPAAKFFDCFSEKGDQPPEGVRS*
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mRNA from alignment at H-elongata_contig181765:208..351-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig181765.4866.1 ID=mRNA_H-elongata_contig181765.4866.1|Name=mRNA_H-elongata_contig181765.4866.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig181765:208..351- (Himanthalia elongata Himel1 dioecious)
ATGGCTGCTGCGAGTGGGGCGAAGGAGCTTCGCCTGGCAGATCATTTCCC
GCTGGTGCACAAGACCTGCAAGAAACCTGCTGCAAAGTTCTTTGATTGCT
TCTCAGAGAAAGGGGACCAGCCTCCAGAAGGGGTGAGGTCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig181765:208..351-

>mRNA_H-elongata_contig181765.4866.1 ID=mRNA_H-elongata_contig181765.4866.1|Name=mRNA_H-elongata_contig181765.4866.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig181765:208..351- (Himanthalia elongata Himel1 dioecious)
ATGGCTGCTGCGAGTGGGGCGAAGGAGCTTCGCCTGGCAGATCATTTCCC
GCTGGTGCACAAGACCTGCAAGAAACCTGCTGCAAAGTTCTTTGATTGCT
TCTCAGAGAAAGGGGACCAGCCTCCAGAAGGGGTGAGGTCCTGAATGGCT
GCTGCGAGTGGGGCGAAGGAGCTTCGCCTGGCAGATCATTTCCCGCTGGT
GCACAAGACCTGCAAGAAACCTGCTGCAAAGTTCTTTGATTGCTTCTCAG
AGAAAGGGGACCAGCCTCCAGAAGGGGTGAGGTCCTGA
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