mRNA_H-elongata_contig18170.4865.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18170.4865.1
Unique NamemRNA_H-elongata_contig18170.4865.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18170.4865.1 vs. uniprot
Match: D8LJW0_ECTSI (ARL3, ARF-like Ras superfamily GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJW0_ECTSI)

HSP 1 Score: 352 bits (902), Expect = 2.900e-122
Identity = 174/188 (92.55%), Postives = 181/188 (96.28%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVELGQLLEEEKLGGVPLLIFANKQDLLSAISADEISQGLNLHTIRDRSWFIQAASAKTAEGLQEGMEWIVSQINDGPGNGPEGKS 564
            MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDIT IMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVELGQLLEEEKL G+P+LIFANKQDLLSA+S+DEISQGLNLHTIRDR+WFIQAASAKT EGLQEGMEW+VSQINDG G G E K+
Sbjct:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITHIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVELGQLLEEEKLAGIPVLIFANKQDLLSALSSDEISQGLNLHTIRDRTWFIQAASAKTGEGLQEGMEWVVSQINDGAGGGAESKN 188
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BLAST of mRNA_H-elongata_contig18170.4865.1 vs. uniprot
Match: A0A835ZEJ4_9STRA (ARL3, ARF-like ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ4_9STRA)

HSP 1 Score: 312 bits (800), Expect = 1.020e-106
Identity = 151/178 (84.83%), Postives = 168/178 (94.38%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVELGQLLEEEKLGGVPLLIFANKQDLLSAISADEISQGLNLHTIRDRSWFIQAASAKTAEGLQEGMEWIVSQIND 534
            MGLLTLLRKLKR+DQEARILVLGLDNAGKTTILKKLSEEDIT IMPTQGFNIKSLMH++FKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSAD+RRM+ETG ELGQLLEE+KL  VP+LI+ANKQDL+SA++ DEI++GLNLHTIRDR W IQ  SAKT +GLQ+GMEWIV++IND
Sbjct:    1 MGLLTLLRKLKRTDQEARILVLGLDNAGKTTILKKLSEEDITSIMPTQGFNIKSLMHDEFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADKRRMEETGEELGQLLEEDKLSEVPVLIYANKQDLMSAMAPDEITEGLNLHTIRDRPWHIQGCSAKTGDGLQDGMEWIVTKIND 178
[Close]
BLAST of mRNA_H-elongata_contig18170.4865.1 vs. uniprot
Match: A0A7R9YCL1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCL1_9STRA)

HSP 1 Score: 300 bits (769), Expect = 6.430e-102
Identity = 144/177 (81.36%), Postives = 163/177 (92.09%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVELGQLLEEEKLGGVPLLIFANKQDLLSAISADEISQGLNLHTIRDRSWFIQAASAKTAEGLQEGMEWIVSQIN 531
            MGLL LLRKLK +D+EARILVLGLDNAGKTTILKKLS+ED+  IMPTQGFNIKSLMH +FKLNVWDIGGQKSIRPYWRNYFDQTDAL+YVIDSADRRR++ETGVELGQLL+E+KL GVP+LIFANKQDL++A S +E++ GLNLH IRDR W +Q  SAKTA+GLQEGMEWIVSQ+N
Sbjct:    1 MGLLNLLRKLKSTDREARILVLGLDNAGKTTILKKLSDEDVNHIMPTQGFNIKSLMHAEFKLNVWDIGGQKSIRPYWRNYFDQTDALVYVIDSADRRRLEETGVELGQLLQEDKLLGVPVLIFANKQDLINAASDEELTDGLNLHVIRDREWTVQPCSAKTADGLQEGMEWIVSQMN 177
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BLAST of mRNA_H-elongata_contig18170.4865.1 vs. uniprot
Match: A0A7S0YMS3_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YMS3_9CRYP)

HSP 1 Score: 289 bits (739), Expect = 1.470e-97
Identity = 137/178 (76.97%), Postives = 160/178 (89.89%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVELGQLLEEEKLGGVPLLIFANKQDLLSAISADEISQGLNLHTIRDRSWFIQAASAKTAEGLQEGMEWIVSQIND 534
            MGLLTLLRKLK++D+EARILVLGLDNAGKTT LKKL++EDIT  MPTQGFNIKS++H+ FKLNVWDIGGQK+IRPYWRNYFDQTDAL+YVID +DRRRMDETGVEL  LLEEE+L GVPLL+FANKQDLL+A++ D++++ LNLH+IRDR W IQ  SAKT EGLQ GMEW+V  IN+
Sbjct:    1 MGLLTLLRKLKKTDKEARILVLGLDNAGKTTALKKLADEDITTTMPTQGFNIKSVIHDGFKLNVWDIGGQKTIRPYWRNYFDQTDALVYVIDCSDRRRMDETGVELNTLLEEEQLAGVPLLLFANKQDLLNAMAPDDVTEALNLHSIRDRIWHIQPCSAKTGEGLQAGMEWMVGNINN 178
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BLAST of mRNA_H-elongata_contig18170.4865.1 vs. uniprot
Match: A0A7S0LYW6_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LYW6_9CRYP)

HSP 1 Score: 286 bits (733), Expect = 1.490e-96
Identity = 137/176 (77.84%), Postives = 160/176 (90.91%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVELGQLLEEEKLGGVPLLIFANKQDLLSAISADEISQGLNLHTIRDRSWFIQAASAKTAEGLQEGMEWIVSQI 528
            MGLLTLLRKLKR+D+EARILVLGLDNAGKTT LK+L++EDIT  MPTQGFNIKS++HE FKLNVWDIGGQKSIRPYWRNYFDQTDA++YVID ADRRR+DETGVEL  LLEEEKL GVP+LIFANK+DL++A+S DE+++ L+LH IRDR+W IQ  SAKT+EGLQ+GMEW+V  I
Sbjct:    7 MGLLTLLRKLKRTDKEARILVLGLDNAGKTTALKRLADEDITHTMPTQGFNIKSVVHEGFKLNVWDIGGQKSIRPYWRNYFDQTDAMVYVIDCADRRRIDETGVELQALLEEEKLAGVPVLIFANKKDLMNAMSPDELTEVLHLHDIRDRTWHIQHCSAKTSEGLQDGMEWLVKNI 182
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BLAST of mRNA_H-elongata_contig18170.4865.1 vs. uniprot
Match: K3WN62_GLOUD (Uncharacterized protein n=32 Tax=Oomycota TaxID=4762 RepID=K3WN62_GLOUD)

HSP 1 Score: 284 bits (727), Expect = 1.300e-95
Identity = 139/187 (74.33%), Postives = 160/187 (85.56%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVELGQLLEEEKLGGVPLLIFANKQDLLSAISADEISQGLNLHTIRDRSWFIQAASAKTAEGLQEGMEWIVSQINDGPGNGPEGK 561
            MGLL LLRKLK+ D EARILVLGLDN GKTTILKKLSEEDI+ IMPTQGFN+KSL  + FKLN+WDIGGQK+IRPYWRNY++QTDALIYVIDSADRRR++ETG+EL  LLEEEKL  VP+L+F+NKQDLL+A+ + EIS  LNL TIRDR+W IQA SAKT EGLQEGMEWIV+ ++   G G E K
Sbjct:    1 MGLLNLLRKLKKDDSEARILVLGLDNGGKTTILKKLSEEDISHIMPTQGFNVKSLQVDGFKLNMWDIGGQKTIRPYWRNYYEQTDALIYVIDSADRRRLEETGMELVTLLEEEKLANVPILVFSNKQDLLNALPSSEISTALNLATIRDRTWHIQACSAKTGEGLQEGMEWIVNTMSSSAGRGREAK 187
[Close]
BLAST of mRNA_H-elongata_contig18170.4865.1 vs. uniprot
Match: A0A7S3HPP9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPP9_9STRA)

HSP 1 Score: 282 bits (721), Expect = 8.710e-95
Identity = 137/179 (76.54%), Postives = 159/179 (88.83%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVELGQLLEEEKLGGVPLLIFANKQDLLSAISADEISQGLNLHTIRDRSWFIQAASAKTAEGLQEGMEWIVSQINDG 537
            MGLLTLLRKLK+SDQEAR+LVLGLDN+GKTTILKKLS+EDI+QIMPTQGFNIKSLMH+ FKLNVWDIGGQKSIRPYWRNY+DQTDALIYVIDSADRRRM+ETGVEL QLL+EEKL  VPLLI ANKQDL++A++  EI+  L L+ +R+R+W I   SA+   GLQEGMEW++ +IN G
Sbjct:    1 MGLLTLLRKLKKSDQEARLLVLGLDNSGKTTILKKLSDEDISQIMPTQGFNIKSLMHDGFKLNVWDIGGQKSIRPYWRNYYDQTDALIYVIDSADRRRMEETGVELQQLLDEEKLANVPLLIMANKQDLMNALTPGEITAELGLNEMRERTWQILPCSARDGTGLQEGMEWLLGEINSG 179
[Close]
BLAST of mRNA_H-elongata_contig18170.4865.1 vs. uniprot
Match: A0A7J7PXL4_9CHLO (ARF-like GTPase n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A7J7PXL4_9CHLO)

HSP 1 Score: 281 bits (718), Expect = 2.170e-94
Identity = 136/176 (77.27%), Postives = 155/176 (88.07%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVELGQLLEEEKLGGVPLLIFANKQDLLSAISADEISQGLNLHTIRDRSWFIQAASAKTAEGLQEGMEWIVSQI 528
            MGLL LLRKL++S+ EARILVLGLDNAGKTTILKKLS+EDI+ IMPTQGFNIKSLMH+ FKLNVWDIGGQKSIRPYWRN FD TDAL+YVIDSADR+R+DE GVEL QLLEEEK+ GVP+L+ ANKQDLL+A+SAD+I++ LNL  IRDR W IQ  SAK   GLQEGMEW+V Q+
Sbjct:    1 MGLLALLRKLRKSEGEARILVLGLDNAGKTTILKKLSDEDISTIMPTQGFNIKSLMHDGFKLNVWDIGGQKSIRPYWRNNFDSTDALVYVIDSADRKRIDECGVELAQLLEEEKMNGVPVLVLANKQDLLAALSADDIAESLNLFLIRDRPWQIQGCSAKDGAGLQEGMEWLVKQV 176
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BLAST of mRNA_H-elongata_contig18170.4865.1 vs. uniprot
Match: L1JN43_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JN43_GUITC)

HSP 1 Score: 281 bits (718), Expect = 2.330e-94
Identity = 135/177 (76.27%), Postives = 155/177 (87.57%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVELGQLLEEEKLGGVPLLIFANKQDLLSAISADEISQGLNLHTIRDRSWFIQAASAKTAEGLQEGMEWIVSQIN 531
            MGLLTLLRKLK+S++E RILVLGLDNAGKTT LKKL++EDIT  MPTQGFNIKS++HE FKLNVWDIGGQK+IRPYWRNYFDQTDAL++VID +D RRMDETGVEL QLL+EEKL GVPLLIFANKQDL++A+  DE+++ L L  IRDR+W IQ  SAKT EGLQ GMEW+V  IN
Sbjct:    1 MGLLTLLRKLKKSEKEFRILVLGLDNAGKTTALKKLADEDITHTMPTQGFNIKSVIHEGFKLNVWDIGGQKTIRPYWRNYFDQTDALVFVIDCSDHRRMDETGVELNQLLDEEKLAGVPLLIFANKQDLMNAMGPDEVTEVLGLTNIRDRAWHIQPCSAKTGEGLQGGMEWLVKNIN 177
[Close]
BLAST of mRNA_H-elongata_contig18170.4865.1 vs. uniprot
Match: A0A7S1G4R5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4R5_9STRA)

HSP 1 Score: 280 bits (716), Expect = 8.700e-94
Identity = 137/176 (77.84%), Postives = 155/176 (88.07%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVELGQLLEEEKLGGVPLLIFANKQDLLSAISADEISQGLNLHTIRDRSWFIQAASAKTAEGLQEGMEWIVSQI 528
            MGLL+LLRKL R+D+EARILVLGLDNAGKTTILKKLS+EDIT IMPTQGFNIKSLMH+ FKLNVWDIGGQK+IRPYWRNY++ TDALI+VIDSADRRR++E G EL  L EE+KL GVP L+FANKQDLLSA SA EI++ LNL  +RDR+W IQA SAKT EGLQEGMEW+V  I
Sbjct:   10 MGLLSLLRKLHRTDKEARILVLGLDNAGKTTILKKLSDEDITHIMPTQGFNIKSLMHDGFKLNVWDIGGQKTIRPYWRNYYESTDALIFVIDSADRRRLEEAGNELAALFEEDKLAGVPALVFANKQDLLSAQSASEIAESLNLDGVRDRAWQIQACSAKTGEGLQEGMEWVVKII 185
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18170.4865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJW0_ECTSI2.900e-12292.55ARL3, ARF-like Ras superfamily GTPase n=2 Tax=Ecto... [more]
A0A835ZEJ4_9STRA1.020e-10684.83ARL3, ARF-like ras superfamily GTPase n=1 Tax=Trib... [more]
A0A7R9YCL1_9STRA6.430e-10281.36Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S0YMS3_9CRYP1.470e-9776.97Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S0LYW6_9CRYP1.490e-9677.84Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
K3WN62_GLOUD1.300e-9574.33Uncharacterized protein n=32 Tax=Oomycota TaxID=47... [more]
A0A7S3HPP9_9STRA8.710e-9576.54Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7J7PXL4_9CHLO2.170e-9477.27ARF-like GTPase n=2 Tax=Scenedesmaceae TaxID=3086 ... [more]
L1JN43_GUITC2.330e-9476.27Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S1G4R5_9STRA8.700e-9477.84Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18170contigH-elongata_contig18170:2238..5056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score351.3
Seed ortholog evalue2.8e-94
Seed eggNOG ortholog2880.D8LJW0
Preferred nameARL3
KEGG koko:K07944,ko:K07977,ko:K11278
GOsGO:0000139,GO:0000166,GO:0000278,GO:0000281,GO:0000910,GO:0001655,GO:0001763,GO:0001822,GO:0001882,GO:0001883,GO:0002009,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0005881,GO:0005929,GO:0005930,GO:0006810,GO:0006892,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007264,GO:0007275,GO:0007399,GO:0007424,GO:0008017,GO:0008092,GO:0008150,GO:0009653,GO:0009888,GO:0009987,GO:0010970,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0022008,GO:0022402,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030496,GO:0030705,GO:0031090,GO:0031503,GO:0031984,GO:0032391,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032838,GO:0035146,GO:0035147,GO:0035239,GO:0035295,GO:0035556,GO:0035639,GO:0035869,GO:0036064,GO:0036094,GO:0042073,GO:0042461,GO:0042995,GO:0043005,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0046530,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051301,GO:0051641,GO:0051649,GO:0051716,GO:0060271,GO:0060429,GO:0060446,GO:0060541,GO:0060562,GO:0061138,GO:0061640,GO:0065007,GO:0070925,GO:0071840,GO:0072001,GO:0097014,GO:0097159,GO:0097367,GO:0097458,GO:0097730,GO:0097731,GO:0097733,GO:0098588,GO:0098791,GO:0099080,GO:0099081,GO:0099111,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901265,GO:1901363,GO:1903047
EggNOG free text desc.GTP binding
EggNOG OGsCOG1100@1,KOG0074@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04031
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionARL3, ARF-like Ras superfamily GTPase
Ec32 orthologEc-01_009870.1
Exons4
Model size567
Cds size567
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18170.4865.1prot_H-elongata_contig18170.4865.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18170 2238..5056 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930047.352161-CDS-H-elongata_contig18170:2237..23931622930047.352161-CDS-H-elongata_contig18170:2237..2393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18170 2238..2393 -
1691679260.2966125-CDS-H-elongata_contig18170:2237..23931691679260.2966125-CDS-H-elongata_contig18170:2237..2393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18170 2238..2393 -
1622930047.3694413-CDS-H-elongata_contig18170:2788..28961622930047.3694413-CDS-H-elongata_contig18170:2788..2896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18170 2789..2896 -
1691679260.31077-CDS-H-elongata_contig18170:2788..28961691679260.31077-CDS-H-elongata_contig18170:2788..2896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18170 2789..2896 -
1622930047.3852656-CDS-H-elongata_contig18170:3279..34381622930047.3852656-CDS-H-elongata_contig18170:3279..3438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18170 3280..3438 -
1691679260.3256006-CDS-H-elongata_contig18170:3279..34381691679260.3256006-CDS-H-elongata_contig18170:3279..3438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18170 3280..3438 -
1622930047.3989127-CDS-H-elongata_contig18170:4912..50561622930047.3989127-CDS-H-elongata_contig18170:4912..5056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18170 4913..5056 -
1691679260.3405936-CDS-H-elongata_contig18170:4912..50561691679260.3405936-CDS-H-elongata_contig18170:4912..5056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18170 4913..5056 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18170.4865.1

>prot_H-elongata_contig18170.4865.1 ID=prot_H-elongata_contig18170.4865.1|Name=mRNA_H-elongata_contig18170.4865.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=189bp
MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITQIMPTQGF
NIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMD
ETGVELGQLLEEEKLGGVPLLIFANKQDLLSAISADEISQGLNLHTIRDR
SWFIQAASAKTAEGLQEGMEWIVSQINDGPGNGPEGKS*
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mRNA from alignment at H-elongata_contig18170:2238..5056-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18170.4865.1 ID=mRNA_H-elongata_contig18170.4865.1|Name=mRNA_H-elongata_contig18170.4865.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2819bp|location=Sequence derived from alignment at H-elongata_contig18170:2238..5056- (Himanthalia elongata Himel1 dioecious)
ATGGGACTCTTGACCTTGCTTCGCAAGCTCAAGAGGAGCGATCAGGAGGC
AAGGATCTTGGTGCTCGGTCTCGACAACGCCGGGAAAACCACGATCCTAA
AGAAGCTCTCAGAGGAGGATATTACGCAGATCATGCCGACACAGGTACTG
ATCCAAGCTCAATATGTGGTCGATCTTTATCAGCCAGTGTCTTAGATCGT
AGCAGTTCTCTGGTCGCATCGGGCGTTTGGGAAACTGCTATGCTAAGAAG
GCATGGATGTTCGAAGGGTTCGAATGAGTTCATATGTTTTTTTTATAAAA
ATACGTCAATCCCACACGTAAAAAAATATTGGAATATATTTTGTGTTGGA
CTGCTGTGATATGCCGTAAATCTGGCTGCCCAGGTCAAAATTCTGGACGA
ACGACATAGCGACATTTTGCTGGGTGGCCCCGTCAGATACAGCATTACCT
CGAATGGATTACGCGCGACATTTATCTCGTAATGCACGGCTCATGTTTCA
GTCACTTTTCCTGCTAGGACGCTTAGCGTCGCTGTTTTTCTCTTCCTTTG
CATGCGACATGTGTATTTATGGACCGTCCCTCGAGAAGTCAAAGATACGA
TCCAAGTCAATCTCACCGCATCAAGCCTAAAGGAATACCAAGATCTAAGA
TATCACAATAATAGCTCATCAGCCAGCTCCTCGACCCTCTTACATTAAAA
TGGAAGAATATCGTTGTTCATGTTCAACCCGCCAAGTCTCAACATCACAC
GGAACTCGTTACTCGACCATCATGTTCGATAGACTAGGTAACCACTCCTG
CGACGAGTCAGCGCTGACTCGTATAATACTAAGAGTGGTTACATATTTTA
TCTAGCCCTGTGAGCCTACATGTCTGATCTAAAAATAGCTAACGATCCAA
CGTCTCCAGGGATAGCTCCCCATAAGGGGGGAGCATTCGCAAACCGGCGT
GGCGCCTCCTTACGTATCATGCCGGTTTGAGCGGTTCAATGCAAATTGAT
AAAAAGGAGATTCAATCACGGTTACAATCATCTGGATATTCGCACCGTAT
TCTCAAACATTCGGTGTCGGGACGGAACGAAATGATAGCGATGACTAGAT
GGCTGGTGATCTTGGGATGAGATAGTGGGCTTAGTCACCCCCCCCCCCTC
CTTTAGCTTTTGTTATATAGAACATGTAGCCACTCCGGCTGCGAGTCAGC
GCTGACTTATCCCAGGAGATTAGTTGCGTATTTTATATTAAGAGGTCAAC
CAATCATCTCCCCTTCTTATTCCTTTTCAAGCCATCGTGGAGATGTCGCA
CGTTCCCGATGTTGTTTGGGTCATCTCTCGAGCTTAAGCCCGTCCGCCAT
TTCTCCTAAAAGCTACTCCAAGCCGAGCAATATATGCTTATGTTATTACA
CCACAGACTCTTAGCTCAAGAAGTGTAGTTTCTCCCTCTTGAAAATCGCT
AGAGGTTTACCTTCACGATAAGAATTACGCCCCAAGCTGGTTACAAGGAC
GAAGCATTGCGAAATTTCTGCATACCTTGGCGATGCTAGAAGAACTTACT
GGTCAGCTTCGCAGCGAAAAAACTGACAACGCATTCATTTTTTGCTGAAC
TCTTGAGCTGTCTGGCAGGGATTCAACATTAAGAGCCTGATGCACGAGGA
CTTCAAGCTGAACGTCTGGGATATCGGTGGCCAGAAGTCCATCAGGCCGT
ATTGGCGTAACTACTTCGACCAGACCGACGCGCTCATCTACGTCATCGAT
AGTGCCGACAGGCGACGCATGGATGAGGTGCTTGCAGAACCGTGGTCGTG
GACGAATGGAGGCAAACAGCATCAATGCACACAATCTTAGCGTTGATTGC
GCTCGCTTTGCAAAGAAGGGATAAAAGCTACTTCATTTGAGGGGAGAGAG
GGGGGGGCTCACGTCGGCTCACTAGTGGCTTGAGAAATAACCAAAGATGC
AACAATCGTATGAAAATCATCGCTACCTTCCAAAAGCAACAGAGCGTATT
TCGCACCGTCTTGCGCCAAAACACCTCCATGTGGGTCTTGGGCGCGTGAT
ACCAAGACGCTATATTCCCTGAATTTCAAGCCACCTTGACCTTCACTGGA
GACACTCTCATTCCTTCGGTCGAATTCGAATTTCGTGGCTGCTTCTTTTG
GGCGTTCCAGACTGGAGTAGAATTGGGACAGCTCTTGGAGGAGGAAAAGC
TGGGGGGCGTGCCGTTGCTCATTTTCGCCAACAAGCAGGATCTTCTGAGC
GCTATATCCGCGGACGAGGTGCGAGCGATTTTCACCTCTCGATGCGGTGG
CCGCATGCCCGTAGTGCATGCAACAAAAATACACGGGAAGCGAAACGAGA
AATCGTTTTAAAACATCATTTAGAAACGTTGAAATCGACAGAGAGACTCG
GCACCGTTGGGTTGGATTGGACATCACGGGCACACCGGAGTCATCGTTCG
TATCACACACGTCGAGCGATCGACGGTGACTACTTCGACGCGCGCGGCAA
CGACCCGTACTATTACCTCGTCCACCTCGGGTATGTACCCGCAATACCAT
GCGTCGCGCTCCTCCTTGGCCGCCCACGGGCGTGAGTCAGGCTTTCATCT
TTCAAGCCGCCCGAGGGAACTTATTCGTATTACATACTTCCTTTTGCTGC
TTTTCGTGCGTAGATCTCCCAGGGGCTCAACCTTCACACCATCCGAGACC
GCTCCTGGTTCATCCAAGCGGCATCGGCCAAGACGGCGGAAGGGTTGCAG
GAAGGCATGGAGTGGATCGTGAGCCAGATTAACGACGGCCCTGGGAATGG
TCCAGAGGGAAAGTCCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig18170:2238..5056-

>mRNA_H-elongata_contig18170.4865.1 ID=mRNA_H-elongata_contig18170.4865.1|Name=mRNA_H-elongata_contig18170.4865.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1134bp|location=Sequence derived from alignment at H-elongata_contig18170:2238..5056- (Himanthalia elongata Himel1 dioecious)
ATGGGACTCTTGACCTTGCTTCGCAAGCTCAAGAGGAGCGATCAGGAGGC
AAGGATCTTGGTGCTCGGTCTCGACAACGCCGGGAAAACCACGATCCTAA
AGAAGCTCTCAGAGGAGGATATTACGCAGATCATGCCGACACAGATGGGA
CTCTTGACCTTGCTTCGCAAGCTCAAGAGGAGCGATCAGGAGGCAAGGAT
CTTGGTGCTCGGTCTCGACAACGCCGGGAAAACCACGATCCTAAAGAAGC
TCTCAGAGGAGGATATTACGCAGATCATGCCGACACAGGGATTCAACATT
AAGAGCCTGATGCACGAGGACTTCAAGCTGAACGTCTGGGATATCGGTGG
CCAGAAGTCCATCAGGCCGTATTGGCGTAACTACTTCGACCAGACCGACG
CGCTCATCTACGTCATCGATAGTGCCGACAGGCGACGCATGGATGAGGGA
TTCAACATTAAGAGCCTGATGCACGAGGACTTCAAGCTGAACGTCTGGGA
TATCGGTGGCCAGAAGTCCATCAGGCCGTATTGGCGTAACTACTTCGACC
AGACCGACGCGCTCATCTACGTCATCGATAGTGCCGACAGGCGACGCATG
GATGAGACTGGAGTAGAATTGGGACAGCTCTTGGAGGAGGAAAAGCTGGG
GGGCGTGCCGTTGCTCATTTTCGCCAACAAGCAGGATCTTCTGAGCGCTA
TATCCGCGGACGAGACTGGAGTAGAATTGGGACAGCTCTTGGAGGAGGAA
AAGCTGGGGGGCGTGCCGTTGCTCATTTTCGCCAACAAGCAGGATCTTCT
GAGCGCTATATCCGCGGACGAGATCTCCCAGGGGCTCAACCTTCACACCA
TCCGAGACCGCTCCTGGTTCATCCAAGCGGCATCGGCCAAGACGGCGGAA
GGGTTGCAGGAAGGCATGGAGTGGATCGTGAGCCAGATTAACGACGGCCC
TGGGAATGGTCCAGAGGGAAAGTCCTAAATCTCCCAGGGGCTCAACCTTC
ACACCATCCGAGACCGCTCCTGGTTCATCCAAGCGGCATCGGCCAAGACG
GCGGAAGGGTTGCAGGAAGGCATGGAGTGGATCGTGAGCCAGATTAACGA
CGGCCCTGGGAATGGTCCAGAGGGAAAGTCCTAA
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