mRNA_H-elongata_contig18135.4850.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18135.4850.1 vs. uniprot
Match: D7FZL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZL7_ECTSI) HSP 1 Score: 295 bits (756), Expect = 1.300e-89 Identity = 200/362 (55.25%), Postives = 248/362 (68.51%), Query Frame = 1
Query: 1 KDAERMADIMVSLSAVKMTLETLKKSKVGVLVSKLKKYANADISRSAKALIKAWRKMAQASGVAGASTLKAGKDSLPKADSAKASAGEGDGAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPTAPVTFRGGIPCHTHLTVYYLLSYSTKTDDPCGVLFRVLLVRCRCVLLFHVSKMIEEGVAPSRLRMRRKLMETLFIEAEEADQSAVALVATAVECAMEKKDSYASSKDAYFAKARQLVFNLKKNSQLREDVREGLVEAERLVVMSSSELMSKDKREAMDKAISERTEARMLDWAEKNQDKINKQCGISSQEGLFECGRCKSKKTTYTQKQTRSADEPMTTFVTCSNCKKRWKFC 1086
+D ER+AD++ SL V++TL L++SKVG VSKLKK+A+ ++S+SAKAL+K W+++A+ASGV G S SAG+G GA+ XXXXXXXXXXXXXXXXXXXXXX T+P+ G + + LS T + C L S + ++ AP RL+MRRK+ +TL + + E ++ A VA VECAM + + Y S K +Y KARQLVFNLKKN QLR+DVREGLVE +RLV M+S+ELM+KDKREAMDKA+SERTEARMLDW +KN+DKINKQCGI +G+FECGRCKS KTTYTQKQTRSADEPMTTFVTCSNCK RWKFC
Sbjct: 21 EDVERIADVLGSLGKVEVTLAVLQESKVGATVSKLKKHADEEVSKSAKALVKKWKRVAEASGVQGXXXXXXXXXXXXX-XSPPGSAGKGSGASKQEVPSPSGXXXXXXXXXXXXXXXXXXXXXXATAATSPLKGAVGKTATSSTSEAVPLSRQTSGSSTSEL----------CTTLEVDSILSDDEPAPLRLKMRRKMFDTLLLGSSEDERIPTARVAKGVECAMNENNPYLSKKASYLDKARQLVFNLKKNDQLRQDVREGLVEPQRLVAMTSTELMAKDKREAMDKAVSERTEARMLDWYDKNEDKINKQCGIKETDGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWKFC 371
BLAST of mRNA_H-elongata_contig18135.4850.1 vs. uniprot
Match: A0A836CH25_9STRA (Transcription factor S-II-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH25_9STRA) HSP 1 Score: 194 bits (493), Expect = 7.070e-52 Identity = 158/365 (43.29%), Postives = 220/365 (60.27%), Query Frame = 1
Query: 4 DAERMADIMVSLSAVKMTLETLKKSKVGVLVSKLKKYANADISRSAKALIKAWRKMAQASGVAGASTLKAGKDSLPKADSAKASAGEGDGAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPTAPVTFRGGIPCHTHLTVYYLLSYSTKTDDPCGVLFRVLLVRCRC----VLLFHVSKMIEEGVAPSRLRMRRKLMETLFIEAEEADQSAVALVATAVECAMEKKDSYASSKDAYFAKARQLVFNLKKNSQLREDVREGLVEAERLVVMSSSELMSKDKREAMDKAISERTEARMLDWAEKNQDKINKQCGISSQEGLFECGRCKSKKTTYTQKQTRSADEPMTTFVTCSNCKKRWKFC 1086
DA R+ DI+ L V MT++ + +SK+G VSKL+K+A++ ++ AKAL+K W+++AQA+GV G++ + XXXXXXXXXXXXXXXXXXXXXXXXXXXXX +A R P L S + D + + + V H++ + E+G+ P+RL+MR+K +E + ++ + +A C +E++ +A F RQL+FNLKKN+ LR DV G V L+ MS +E++S KR+AM+ + +AR +DWAEKNQD+INKQCGI++ EG+FECGRCKSKKT Y QKQTRSADEPMTTFVTC +C K+W+FC
Sbjct: 24 DAPRVCDILSQLEKVDMTVDIMAESKIGSAVSKLRKHADSRVAGQAKALVKVWKQLAQAAGVEGSNRAQ-------------------------EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASAEQKLRVQAPVEKALKDLRRGSTDSFVSDASPRVGGAKPAKAQTPKATVSAAHMASLQEDGLLPNRLKMRQKFLEIFVLPEDDESAAPDGQLAAEAACGVERE------LNAKFPFVRQLLFNLKKNAALRSDVVHGAVPCGALIAMSPTEMLSAAKRQAMEAQAQDLVDARRMDWAEKNQDEINKQCGITNMEGMFECGRCKSKKTHYYQKQTRSADEPMTTFVTCLHCGKKWRFC 357
BLAST of mRNA_H-elongata_contig18135.4850.1 vs. uniprot
Match: A0A7S2XYD9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYD9_9STRA) HSP 1 Score: 160 bits (405), Expect = 5.290e-40 Identity = 124/364 (34.07%), Postives = 175/364 (48.08%), Query Frame = 1
Query: 7 AERMADIMVSLSAVKMTLETLKKSKVGVLVSKLKKYANADISRSAKALIKAWRKMAQA--SGVAGASTLKAGKDSLPKADSAKASAGEGDGAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPTAPVTFRGGIPCHTHLTVYYLLSYSTKTDDPCGVLFRVLLVRCRCVLLFHVSKMI--EEGVAPSRLRMRRKLMETLFIEAEEADQSAVALVATAVECAMEKKDSYASSKDAYFAKARQLVFNLKKNSQLREDVREGLVEAERLVVMSSSELMSKDKREAMDKAISERTEARMLDWAEKNQDKINKQCGISSQEGLFECGRCKSKKTTYTQKQTRSADEPMTTFVTCSNCKKRWKFC 1086
AER+ D++ L+ V +T++ L+ +KVG+ + KL+K+++ ++ +AK L+K W++MA+ +G A A+T A S P A + + G V GG K D G V ++ EEG+ P RL++R ++ T+F + +A A A VE A+ + +++ Y AK RQL FNLKKNS+LR DV G + + LV +SS EL + D R + + A DW N K+N CGI EGLF+C RCKSKKTT+TQKQTRSADEPMT FVTC NC RWKFC
Sbjct: 30 AERIIDLIGRLNEVPVTVDDLRDTKVGLTIGKLRKHSDQSVAGAAKKLLKKWKRMAEGEMTGEAAANTP-APAPSPPAASNGASEEG--------------------------------------------VASNGGXXXXXXXXXXDXXXXDKKKADDEG----------------GVPDLVQGEEGLVPQRLKVRERMF-TIFTQDVDASVQKGAAAAREVEAAIHEIFNFSQKTKEYSAKVRQLNFNLKKNSKLRADVVNGSLAPDLLVQLSSDELATDDLRNERARIREDAINASRSDWDAANDQKLNAMCGIKQMEGLFQCFRCKSKKTTHTQKQTRSADEPMTVFVTCLNCGNRWKFC 331
BLAST of mRNA_H-elongata_contig18135.4850.1 vs. uniprot
Match: A0A8K1CMA4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMA4_PYTOL) HSP 1 Score: 156 bits (395), Expect = 7.380e-39 Identity = 92/181 (50.83%), Postives = 120/181 (66.30%), Query Frame = 1
Query: 547 IEEGVAPSRLRMRRKLMETLFIEAEEADQSAVALVATAVECAMEKKDSYA---SSKDAYFAKARQLVFNLKKNSQLREDVREGLVEAERLVVMSSSELMSKDKREAMDKAISERTEARMLDWAEKNQDKINKQCGISSQEGLFECGRCKSKKTTYTQKQTRSADEPMTTFVTCSNCKKRWK 1080
I G+ R +R KL ETL + E + S VA+ A+E AM K+ + + +K Y AK RQL FNLKKN+QLRED+ + +V AE+L+ M+ EL +++KR + K + + LDWA+ N+DKINKQCGI + +GLF CGRCKS KT+ TQKQTRSADEPMT FV C NC RWK
Sbjct: 133 IPAGLDKVRATVRTKLKETLELTEEGGNPSDVAM---AIEIAMAKQFNMSLPGENKKDYTAKFRQLSFNLKKNAQLREDLLQDMVSAEQLIAMTPEELATEEKRNEIMKLRDDAFQRARLDWADANEDKINKQCGIENSKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 310
BLAST of mRNA_H-elongata_contig18135.4850.1 vs. uniprot
Match: F0W9A3_9STRA (Transcription elongation factor putative n=2 Tax=Albugo TaxID=65356 RepID=F0W9A3_9STRA) HSP 1 Score: 149 bits (377), Expect = 1.930e-36 Identity = 92/179 (51.40%), Postives = 116/179 (64.80%), Query Frame = 1
Query: 556 GVAPSRLRMRRKLMETLFIEAEEADQSAVALVATAVECAMEKKDSYA---SSKDAYFAKARQLVFNLKKNSQLREDVREGLVEAERLVVMSSSELMSKDKREAMDKAISERTEARMLDWAEKNQDKINKQCGIS-SQEGLFECGRCKSKKTTYTQKQTRSADEPMTTFVTCSNCKKRWK 1080
G+ R +R K+ E L E +AD S VATA+E AM + S +K Y AK RQL FNLKKN++LRED+ +V AE+L+ MS EL + +KR ++K + + LDWA+ N+DKINKQCGI + +GLF CGRCKS KT+ TQKQTRSADEPMT FV C NC RWK
Sbjct: 132 GLDKMRATVRTKMKENL--ELADADTSNAPDVATAIEIAMARMFSVGFPGENKKDYTAKFRQLSFNLKKNARLREDLLLDVVSAEQLINMSPEELATDEKRHEIEKLRDDAFQRARLDWADANEDKINKQCGIEKNSKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 308
BLAST of mRNA_H-elongata_contig18135.4850.1 vs. uniprot
Match: A0A5D6XF33_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XF33_9STRA) HSP 1 Score: 150 bits (378), Expect = 1.990e-36 Identity = 89/181 (49.17%), Postives = 114/181 (62.98%), Query Frame = 1
Query: 547 IEEGVAPSRLRMRRKLMETLFIEAEEADQSAVALVATAVECAMEKKDSYA---SSKDAYFAKARQLVFNLKKNSQLREDVREGLVEAERLVVMSSSELMSKDKREAMDKAISERTEARMLDWAEKNQDKINKQCGISSQEGLFECGRCKSKKTTYTQKQTRSADEPMTTFVTCSNCKKRWK 1080
I G R +R KL ETL + +D + A A+E AM + + +K Y AK RQL FNLKKN+ LRED+ + V AE+L+ MS+ EL +++KR + K + + LDWA+ N+DKINKQCGI + +GLF CGRCKS KT+ TQKQTRSADEPMT FV C NC RWK
Sbjct: 146 IPPGFDKMRATVRTKLKETLAV----SDGGSAEDTAVAIEVAMARMFNMGYPGENKKEYTAKFRQLSFNLKKNAPLREDLLQDAVSAEQLIAMSADELATEEKRLEVQKLRDDAFQKARLDWADANEDKINKQCGIENAKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 322
BLAST of mRNA_H-elongata_contig18135.4850.1 vs. uniprot
Match: K3WZ99_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZ99_GLOUD) HSP 1 Score: 147 bits (370), Expect = 2.490e-35 Identity = 122/362 (33.70%), Postives = 169/362 (46.69%), Query Frame = 1
Query: 4 DAERMADIMVSLSAVKMTLETLKKSKVGVLVSKLKKYANADISRSAKALIKAWRKMAQASGVAGASTLKAGKDSLPKADSAKASAGEGDGAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPTAPVTFRGGIPCHTHLTVYYLLSYSTKTDDPCGVLFRVLLVRCRCVLLFHVSKMIEEGVAPSRLRMRRKLMETLFIEAEEADQSAVALVATAVECAMEKKDSYA---SSKDAYFAKARQLVFNLKKNSQLREDVREGLVEAERLVVMSSSELMSKDKREAMDKAISERTEARMLDWAEKNQDKINKQCGISSQEGLFECGRCKSKKTTYTQKQTRSADEPMTTFVTCSNCKKRWK 1080
DA + D++ +L +T LK++K+G V K++K+ N I+ AK L+K+W+ MA + A AS+ S P + + DG +P V S S+ P I G+ R +R KL E L +A E +ATA+E +M + + +K Y AK RQL FNLKKN+ LRED+ + V AE+L+ MS+ EL +++KR + K + + LDWA+ N+DKINKQCGI + +GLF CGRCKS KT+ TQKQTRSADEPMT FV C NC RWK
Sbjct: 21 DAGEVLDVLRTLEKTTITYGILKETKLGHTVGKMRKHENEKIANQAKLLVKSWKSMALSPKPATASS------STPTLERKSSGTSSFDG---------------------------------DRIPKKSVNST---------------SSSSNGAKPAAATPXXXXXXXXXXXXASRGPFIPAGLDKVRATVRTKLKEIL--QATEGGDPEE--IATAIEVSMARMFNMGYPGENKKDYTAKFRQLSFNLKKNTPLREDLLQDAVSAEQLINMSADELATEEKRNEILKLRDDAFQRARLDWADANEDKINKQCGIENAKGLFTCGRCKSTKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 324
BLAST of mRNA_H-elongata_contig18135.4850.1 vs. uniprot
Match: A0A2D4BYE6_PYTIN (Transcription elongation factor, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BYE6_PYTIN) HSP 1 Score: 145 bits (365), Expect = 9.940e-35 Identity = 146/362 (40.33%), Postives = 189/362 (52.21%), Query Frame = 1
Query: 4 DAERMADIMVSLSAVKMTLETLKKSKVGVLVSKLKKYANADISRSAKALIKAWRKMAQASGVAGASTLKAGKDSLPKADSAKASAGEGDGAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPTAPVTFRGGIPCHTHLTVYYLLSYSTKTDDPCGVLFRVLLVRCRCVLLFHVSKMIEEGVAPSRLRMRRKLMETLFIEAEEADQSAVALVATAVECAMEKKDSYAS---SKDAYFAKARQLVFNLKKNSQLREDVREGLVEAERLVVMSSSELMSKDKREAMDKAISERTEARMLDWAEKNQDKINKQCGISSQEGLFECGRCKSKKTTYTQKQTRSADEPMTTFVTCSNCKKRWK 1080
DA D + +L + MT+ LK++K+G V KL+K+ NADI++ AK L+K W+ MA + PK + S+ XXXXXXXXXXXXXXXXXXXXXXXX P P T P +I G+ R +R KL E L +EA E S VAL A+E M K+ + + +K Y AK RQL FNLKKN+QLRED+ + +V A++L+ MS+ EL +++KR M + + + LDW + N+DKIN+QCGI S +GLF C RCKS KT TQKQTRSADEPM TC NC KRWK
Sbjct: 21 DAPAALDALRALDKITMTVALLKETKLGHTVGKLRKHENADIAQLAKTLVKNWKSMALS----------------PKPGLERRSSTASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPESNGLKRPPRPTTSAPSRP------------------------------------------LITPGLDKVRAMVRTKLKEVLELEAAEGCPSDVAL---AIEVEMAKEFNMGAPNENKKDYTAKFRQLSFNLKKNAQLREDLLQDMVSADQLIHMSAEELATEEKRNEMKRLQQDAFDRARLDWEKANEDKINQQCGIESNKGLFTCSRCKSNKTXNTQKQTRSADEPM----TCLNCGKRWK 317
BLAST of mRNA_H-elongata_contig18135.4850.1 vs. uniprot
Match: W4G1Y0_9STRA (Transcription elongation factor S-II n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G1Y0_9STRA) HSP 1 Score: 142 bits (357), Expect = 2.160e-33 Identity = 119/366 (32.51%), Postives = 168/366 (45.90%), Query Frame = 1
Query: 4 DAERMADIMVSLSAVKMTLETLKKSKVGVLVSKLKKYANADISRSAKALIKAWRKMAQASGVAGASTLKAGKDSLPKADSAKASAGEGDGAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPTA-PVTFRGGIPCHTHLTVYYLLSYSTKTDDPCGVLFRVLLVRCRCVLLFHVSKMIEEGVAPSRLRMRRKLMETLFIEAEEADQSAVALVATAVECAMEKKDSYASSKDA------YFAKARQLVFNLKKNSQLREDVREGLVEAERLVVMSSSELMSKDKREAMDKAISERTEARMLDWAEKNQDKINKQCGISSQEGLFECGRCKSKKTTYTQKQTRSADEPMTTFVTCSNCKKRWK 1080
D +AD M L+ V MTL LK +K+G ++KL+K+ +S AK L+K W+ +A S +K D + + K S D +A P A P+T R P H S + P + I +G+ R +RRKL E L + + VA +E AM ++ S+++ Y K RQ+ FNLKKN LR+++ + ++L+ MS E+ ++++R+ MD+ + + LDWAE N DKINK CGI GLF CGRCKS KT+ TQ+QTRSADEPMT FV C NC KRWK
Sbjct: 21 DQNGVADAMEHLNTVDMTLAILKDTKIGQTIAKLRKHDAEVVSSKAKHLLKKWKTLASRPSD---SDIKVDPDVKSEMGTPKVSPTASDLSAKDESKWSVKVETIKDEPKRPVKDD----------PAATPITIRRA-PVHAFS--------SQRNSTP--------------------FEFIPKGLQDVRATVRRKLKEVLSVAETPELVAEAEFVAVGIEVAMAREFKMDSARNTNEGKKHYTDKYRQVSFNLKKNESLRQNLLTHHISGDQLIKMSPDEMATEERRKEMDQLRDDAFQRARLDWAEANADKINKACGIKDTRGLFTCGRCKSTKTSNTQQQTRSADEPMTVFVICHNCGKRWK 344
BLAST of mRNA_H-elongata_contig18135.4850.1 vs. uniprot
Match: A0A7S2MN26_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MN26_9STRA) HSP 1 Score: 142 bits (357), Expect = 2.410e-33 Identity = 129/365 (35.34%), Postives = 177/365 (48.49%), Query Frame = 1
Query: 4 DAERMADIMVSLSAVKMTLETLKKSKVGVLVSKLKKYANADISRSAKALIKAWRKMAQASGVAGASTLKAGKDSLPKADSAKASAGEGDGAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPTAPVTFRGGIPCHTHLTVYYLLSYSTKTDDPCGVLFRVLLVRCRCVLLFHVSKMIEEGVAPSRLRMRRKLMETLFIEAEEADQSAVALVA---TAVECAMEKKDSYASSKDAYFAKARQLVFNLKKNSQLREDVREGLVEAERLVVMSSSELMSKDKREAMDKAISERTEARMLDWAEKNQDKINKQCGISSQ---EGLFECGRCKSKKTTYTQKQTRSADEPMTTFVTCSNCKKRWK 1080
D ER DI+ L + MTL+ L + +G +VSKLK + + ++ AKAL+K W+K+A+ GV G +++ + K K S K S XXXXXXXXXX P AP + P ++ C L ++ V S ++ DQS A+ A AVE A++ +K +Y KAR L FNLKKN+ LRE++ G A +LV MS +L + +K +A ++A S ++R+LDW +KN+ KIN+ CGI + LF CGRCKS KTT TQKQTRSADEPMT FV C+NC RWK
Sbjct: 49 DKERCMDILQRLEELPMTLQLLSATLIGTVVSKLKSHKDGAVASKAKALVKKWKKLAKEGGVGGGASVSSNKSE--KRPSLKKS------------------LSXXXXXXXXXXKSTTGSGAPAGAPEAPKEWDKLPPLRKNI----------------------------CTKLHNIFMTSPASVLDSAPELK--------------DQSLAAVSAQRAAAVELAIQNFSK--GAKASYTDKARTLFFNLKKNAPLRENILLGHTTAAQLVAMSPEQLATNEKAKARNEAASALNDSRLLDWEQKNESKINEMCGIKGELLKASLFTCGRCKSTKTTSTQKQTRSADEPMTVFVFCTNCGNRWK 349 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18135.4850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18135.4850.1 >prot_H-elongata_contig18135.4850.1 ID=prot_H-elongata_contig18135.4850.1|Name=mRNA_H-elongata_contig18135.4850.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=358bp MADIMVSLSAVKMTLETLKKSKVGVLVSKLKKYANADISRSAKALIKAWRback to top mRNA from alignment at H-elongata_contig18135:2..6616- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18135.4850.1 ID=mRNA_H-elongata_contig18135.4850.1|Name=mRNA_H-elongata_contig18135.4850.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6615bp|location=Sequence derived from alignment at H-elongata_contig18135:2..6616- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18135:2..6616- >mRNA_H-elongata_contig18135.4850.1 ID=mRNA_H-elongata_contig18135.4850.1|Name=mRNA_H-elongata_contig18135.4850.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2148bp|location=Sequence derived from alignment at H-elongata_contig18135:2..6616- (Himanthalia elongata Himel1 dioecious)back to top |