mRNA_H-elongata_contig181176.4842.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig181176.4842.1
Unique NamemRNA_H-elongata_contig181176.4842.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig181176.4842.1 vs. uniprot
Match: A0A6H5LAW2_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LAW2_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 6.680e-20
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:    4 DFGLAKIVRRKAGRLNQRYEMTGETGSTRYMCPEVAMQLPYNEK 135
            DFGLAKIVRR+ GRL+QRYEMTGETGSTRYMCPEVAMQLPYNEK
Sbjct:  232 DFGLAKIVRRRGGRLSQRYEMTGETGSTRYMCPEVAMQLPYNEK 275
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BLAST of mRNA_H-elongata_contig181176.4842.1 vs. uniprot
Match: D7FS28_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS28_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.150e-11
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    4 DFGLAKIVRRKAGRLNQRYEMTGETGSTRYMCPEVAMQLPYNEK 135
            DFGLA++V+R+  R+N RYEMTGETGS RYM PEV   LPYNEK
Sbjct:  160 DFGLARVVKRR-NRVNARYEMTGETGSMRYMAPEVVESLPYNEK 202
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BLAST of mRNA_H-elongata_contig181176.4842.1 vs. uniprot
Match: A0A6H5L2R6_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2R6_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.170e-11
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    4 DFGLAKIVRRKAGRLNQRYEMTGETGSTRYMCPEVAMQLPYNEK 135
            DFGLA++V+R+  R+N RYEMTGETGS RYM PEV   LPYNEK
Sbjct:  373 DFGLARVVKRR-NRVNARYEMTGETGSMRYMAPEVVESLPYNEK 415
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BLAST of mRNA_H-elongata_contig181176.4842.1 vs. uniprot
Match: A0A835ZE86_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE86_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.000e-11
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    4 DFGLAKIVRRKAGRLNQRYEMTGETGSTRYMCPEVAMQLPYNEK 135
            DFGLA+ V+R+A R+N RY+MTGETGS RYM PEV   LPYNEK
Sbjct:  307 DFGLARCVKRRA-RVNARYDMTGETGSMRYMAPEVVESLPYNEK 349
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BLAST of mRNA_H-elongata_contig181176.4842.1 vs. uniprot
Match: A0A835YQV0_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQV0_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.010e-10
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 LDFGLAKIVRRKA----GRLNQRYEMTGETGSTRYMCPEVAMQLPYNEK 135
            +DFGLAK+V+R      G+   RY+MTGETGS RYM PE  + LPYNEK
Sbjct:   41 IDFGLAKLVKRSRADCHGKPLARYQMTGETGSPRYMAPECHLNLPYNEK 89
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BLAST of mRNA_H-elongata_contig181176.4842.1 vs. uniprot
Match: A0A836CC53_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC53_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.650e-10
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 LDFGLAKIVRRKAGRLNQRYEMTGETGSTRYMCPEVAMQLPYNEK 135
            +DFGLAK+VRRK   L++ Y MT +TGS R+M PEV +  PYNEK
Sbjct:  414 VDFGLAKVVRRKYANLSEAYTMTSQTGSLRFMAPEVGLDKPYNEK 458
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BLAST of mRNA_H-elongata_contig181176.4842.1 vs. uniprot
Match: A0A7S3XMV1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMV1_HETAK)

HSP 1 Score: 60.5 bits (145), Expect = 5.490e-10
Identity = 31/44 (70.45%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    4 DFGLAKIV--RRKAGRLNQRYEMTGETGSTRYMCPEVAMQLPYN 129
            DFGLAKIV  RR+ G     YE+TGETGS RYM PEVA QLPYN
Sbjct:   55 DFGLAKIVKKRRRTGLNLPTYELTGETGSLRYMAPEVAQQLPYN 98
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BLAST of mRNA_H-elongata_contig181176.4842.1 vs. uniprot
Match: A0A835ZAS2_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAS2_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.690e-10
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 LDFGLAKIVRRKA----GRLNQRYEMTGETGSTRYMCPEVAMQLPYNEK 135
            +DFGLAK+++R      G+  +RY MTGETGS RYM PE  + LPYNEK
Sbjct:   33 IDFGLAKLIKRAKTDCRGQPLERYTMTGETGSPRYMAPECHLNLPYNEK 81
[Close]
BLAST of mRNA_H-elongata_contig181176.4842.1 vs. uniprot
Match: A0A6V4M4K7_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A6V4M4K7_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 1.030e-9
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    4 DFGLAKIVRRKAGRLNQRYEMTGETGSTRYMCPEVAMQLPYNEK 135
            DFGLAK+V R  GR     EMTG+TGS RYM PEVA+ LPYNEK
Sbjct:   36 DFGLAKLVPR-GGRDAHAVEMTGKTGSARYMAPEVALSLPYNEK 78
[Close]
BLAST of mRNA_H-elongata_contig181176.4842.1 vs. uniprot
Match: A0A7S1ZVA0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZVA0_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.290e-9
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 LDFGLAKIVRRKAGRLNQRYEMTGETGSTRYMCPEVAMQLPYNEK 135
            LDFGLA+IV+      N+ Y M+G+TGS RYM PEVA  LPYN+K
Sbjct:   83 LDFGLARIVKNSDSDSNEVYHMSGQTGSLRYMAPEVAKSLPYNQK 127
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig181176.4842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LAW2_9PHAE6.680e-2093.18Protein kinase domain-containing protein n=2 Tax=E... [more]
D7FS28_ECTSI1.150e-1170.45Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5L2R6_9PHAE1.170e-1170.45Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835ZE86_9STRA3.000e-1170.45Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835YQV0_9STRA3.010e-1059.18Kinase-like domain-containing protein (Fragment) n... [more]
A0A836CC53_9STRA3.650e-1060.00Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S3XMV1_HETAK5.490e-1070.45Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835ZAS2_9STRA6.690e-1057.14Kinase-like domain-containing protein (Fragment) n... [more]
A0A6V4M4K7_9EUKA1.030e-968.18Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S1ZVA0_9STRA1.290e-960.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig181176contigH-elongata_contig181176:175..309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue6.3e-16
Seed eggNOG ortholog2880.D7FUV9
KEGG koko:K14304
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
GOsGO:0000323,GO:0000902,GO:0000904,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005795,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006914,GO:0006928,GO:0006935,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007528,GO:0008088,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009267,GO:0009605,GO:0009653,GO:0009894,GO:0009987,GO:0009991,GO:0010008,GO:0010506,GO:0010721,GO:0010769,GO:0010771,GO:0010941,GO:0010970,GO:0010975,GO:0010977,GO:0012505,GO:0016020,GO:0016043,GO:0016049,GO:0016192,GO:0016197,GO:0016241,GO:0016301,GO:0016310,GO:0016482,GO:0016740,GO:0016772,GO:0016773,GO:0017016,GO:0017137,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0019899,GO:0022008,GO:0022603,GO:0022604,GO:0023052,GO:0030030,GO:0030100,GO:0030154,GO:0030182,GO:0030424,GO:0030425,GO:0030705,GO:0031090,GO:0031175,GO:0031267,GO:0031323,GO:0031329,GO:0031344,GO:0031345,GO:0031410,GO:0031594,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0031984,GO:0032418,GO:0032501,GO:0032502,GO:0032879,GO:0032886,GO:0032989,GO:0032990,GO:0033036,GO:0033043,GO:0033267,GO:0033554,GO:0034613,GO:0034976,GO:0035556,GO:0036211,GO:0036465,GO:0036477,GO:0040007,GO:0040011,GO:0042147,GO:0042221,GO:0042330,GO:0042594,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043195,GO:0043198,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043679,GO:0044087,GO:0044088,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045202,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046907,GO:0048311,GO:0048312,GO:0048468,GO:0048488,GO:0048489,GO:0048519,GO:0048523,GO:0048588,GO:0048589,GO:0048666,GO:0048667,GO:0048675,GO:0048699,GO:0048731,GO:0048812,GO:0048814,GO:0048846,GO:0048856,GO:0048858,GO:0048869,GO:0050767,GO:0050768,GO:0050773,GO:0050774,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050808,GO:0050896,GO:0051020,GO:0051049,GO:0051093,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051493,GO:0051640,GO:0051641,GO:0051645,GO:0051646,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051683,GO:0051716,GO:0051960,GO:0051961,GO:0060284,GO:0060341,GO:0060548,GO:0060560,GO:0060627,GO:0061174,GO:0061564,GO:0061845,GO:0061919,GO:0065007,GO:0065008,GO:0070507,GO:0070727,GO:0071212,GO:0071496,GO:0071704,GO:0071840,GO:0090128,GO:0097447,GO:0097458,GO:0097479,GO:0097480,GO:0097485,GO:0097708,GO:0098588,GO:0098657,GO:0098693,GO:0098791,GO:0098793,GO:0098805,GO:0098852,GO:0099003,GO:0099111,GO:0099174,GO:0099504,GO:0120025,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0140096,GO:0150034,GO:1900242,GO:1901214,GO:1901215,GO:1901564,GO:1902115,GO:1902284,GO:1903421,GO:1990033,GO:1990138,GO:2000026,GO:2000171,GO:2000331,GO:2000785
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionSerine/threonine-protein kinase CTR1
Ec32 orthologEc-26_004390.1
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930044.4943562-CDS-H-elongata_contig181176:174..3091622930044.4943562-CDS-H-elongata_contig181176:174..309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181176 175..309 -
1691679259.2187066-CDS-H-elongata_contig181176:174..3091691679259.2187066-CDS-H-elongata_contig181176:174..309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181176 175..309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig181176.4842.1prot_H-elongata_contig181176.4842.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig181176 175..309 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig181176.4842.1

>prot_H-elongata_contig181176.4842.1 ID=prot_H-elongata_contig181176.4842.1|Name=mRNA_H-elongata_contig181176.4842.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
LDFGLAKIVRRKAGRLNQRYEMTGETGSTRYMCPEVAMQLPYNEK
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mRNA from alignment at H-elongata_contig181176:175..309-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig181176.4842.1 ID=mRNA_H-elongata_contig181176.4842.1|Name=mRNA_H-elongata_contig181176.4842.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig181176:175..309- (Himanthalia elongata Himel1 dioecious)
CTAGATTTCGGTTTGGCGAAGATTGTGCGGCGGAAAGCCGGTCGTCTGAA
CCAACGCTACGAAATGACGGGAGAAACGGGTTCTACTAGGTACATGTGCC
CGGAGGTGGCGATGCAGCTGCCCTACAACGAAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig181176:175..309-

>mRNA_H-elongata_contig181176.4842.1 ID=mRNA_H-elongata_contig181176.4842.1|Name=mRNA_H-elongata_contig181176.4842.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig181176:175..309- (Himanthalia elongata Himel1 dioecious)
CTAGATTTCGGTTTGGCGAAGATTGTGCGGCGGAAAGCCGGTCGTCTGAA
CCAACGCTACGAAATGACGGGAGAAACGGGTTCTACTAGGTACATGTGCC
CGGAGGTGGCGATGCAGCTGCCCTACAACGAAAAGCTAGATTTCGGTTTG
GCGAAGATTGTGCGGCGGAAAGCCGGTCGTCTGAACCAACGCTACGAAAT
GACGGGAGAAACGGGTTCTACTAGGTACATGTGCCCGGAGGTGGCGATGC
AGCTGCCCTACAACGAAAAG
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