mRNA_H-elongata_contig18116.4839.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18116.4839.1
Unique NamemRNA_H-elongata_contig18116.4839.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig18116.4839.1 vs. uniprot
Match: D8LTT1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT1_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 9.210e-64
Identity = 117/231 (50.65%), Postives = 158/231 (68.40%), Query Frame = 1
Query:   16 HGAQELLQSVNSDMWTPLMIACDAGSLETVRVLVDAGANLNAHDKDSRTVLDIAVSRNHLLLVCYLRTEGAFSSTEFWHARRAAGDAPRLTGILETHKHMVHTLDNNGRTALLLACVGGQVDVVKALVDAGADVNFRDPSGMSPLSVASVIGNVPLARYLMHNDKVNLSARNNAGWTPLMQAVVKGDLTMASRFLIDRGASVNDASFDEESVFDLARRLAGPEIQQYIASK 708
            +GA++LL S NSDMWTPLM+ACDAGSL TV+VLV+AGA+L + + ++ T LDIA  RNHLL+ CYLRTEGA +S +FW A  A GDA  ++ +L  + H+V +LD +GRTALL +C+GG ++V + LV+AGADV+F+D SG SPL VA+V+GN  L RYL+      L+ +N                         RGA+VND S   ESV D+ARR +GPE+Q+Y+A+K
Sbjct:  868 NGAKDLLHSTNSDMWTPLMVACDAGSLATVQVLVEAGADLASFNNENLTALDIAADRNHLLVECYLRTEGAVTSDQFWSAADA-GDAATISKLLRGNGHLVTSLDKDGRTALLRSCIGGHLEVARLLVEAGADVDFQDSSGTSPLGVAAVLGNKELTRYLVQIGGARLTLKNKVXXXXXXXXXXXXXXXXXXXXXX-RGAAVNDGSPAGESVLDMARRFSGPELQRYLAAK 1096          
BLAST of mRNA_H-elongata_contig18116.4839.1 vs. uniprot
Match: A0A6H5KQW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQW0_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 2.070e-50
Identity = 103/207 (49.76%), Postives = 139/207 (67.15%), Query Frame = 1
Query:   16 HGAQELLQSVNSDMWTPLMIACDAGSLETVRVLVDAGANLNAHDKDSRTVLDIAVSRNHLLLVCYLRTEGAFSSTEFWHARRAAGDAPRLTGILETHKHMVHTLDNNGRTALLLACVGGQVDVVKALVDAGAD----------VNFR----DPSGMSPLSVASVIGNVPLA-----RYLMHNDKVNLSARNNAGWTPLMQAVVKGDL 579
            +GA++L+ S NSDMWTPLM+ACDAGSL TV+VLV+AGA+L + + ++ T LDIA  RNHLL+ CYLRTEGA +S +FW A  + GDA  ++ +L  + H+V +LD NGRTALL +C+GG ++V + LV+AGAD           NF     D S + P + +  + +V LA     RYL+      L+ +N  GWTPLMQAVVKGDL
Sbjct:  865 NGAKDLIHSTNSDMWTPLMVACDAGSLATVQVLVEAGADLASFNNENLTALDIAADRNHLLVECYLRTEGAVTSDQFWSAADS-GDAATISKLLRGNGHLVMSLDKNGRTALLRSCIGGHLEVARLLVEAGADGIAPLGDGGVPNFTTDKGDTSSVKPRN-SHPLPDVLLAFVMERRYLVQIGGARLTLKNKVGWTPLMQAVVKGDL 1069          
BLAST of mRNA_H-elongata_contig18116.4839.1 vs. uniprot
Match: A0A0B7N6H4_9FUNG (Abhydrolase_3 domain-containing protein n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7N6H4_9FUNG)

HSP 1 Score: 91.3 bits (225), Expect = 1.900e-17
Identity = 67/219 (30.59%), Postives = 112/219 (51.14%), Query Frame = 1
Query:   58 WTPLMIACDAGSLETVRVLVDAGANLNAHDKDSRTVLDIAVSRNHLLLVCYLRTEGAFSSTEFWHARRAAGDAPRLTGILETHKHMVHTL--------------DNNGRTALLLACVGGQVDVVKALVDAGADVNFRDPSGMSPLSVASVIGNVPLARYLMHNDKVNLSARNNAG-WTPLMQAVVKGDLTMASRFLIDRGASVNDASFDEE--SVFDLA 663
            WTP+MIA   G LE V++L ++GA LN   KD RT L +AV   H+ L  YL  +   + T+  ++ R    A  ++G     +   + L              DN+GR  LL + V   ++++K L+D GAD N  D  G + +  A+++G++ + R L   D ++ +A +    WTPLM +  +G   +  ++LI+    VN    D++  + +DLA
Sbjct:  106 WTPVMIAAMKGKLEIVKLLTESGALLNRKTKDGRTALYLAVQEGHVELSKYLADQYPAAITQATNSGRYPLQAAAISGTQAAFEATCYLLSHATINLPTILAHRDNSGRNILLDSAVSQNLELLKFLLDQGADANDADSLGRNMIHHAAMVGHLSVLRMLNTLDGLDWNAPDTWDFWTPLMHSARQGHFNIV-KYLIET-IKVNPNIKDKQGRTAYDLA 322          
BLAST of mRNA_H-elongata_contig18116.4839.1 vs. uniprot
Match: A0A8H7UL56_9FUNG (Uncharacterized protein n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7UL56_9FUNG)

HSP 1 Score: 86.3 bits (212), Expect = 3.450e-16
Identity = 63/199 (31.66%), Postives = 106/199 (53.27%), Query Frame = 1
Query:   58 WTPLMIACDAGSLETVRVLVDAGANLNAHDKDSRTVLDIAVSRNHLLLVCYLRTEGAFSSTEFWHARR---AAGDAPRLTGILETHKHMV-HTL----------DNNGRTALLLACVGGQVDVVKALVDAGADVNFRDPSGMSPLSVASVIGNVPLARYL-MHNDKVNLSARNNAG-WTPLMQAVVKGDLTMASRFLID 606
            WTP+MIA   G+L+ V +L ++GA LN   KD RT L +AV   H+ L  YL  +   + T+  ++ R    A  A    G  E  ++++ H +          DN+GR  LL + V   ++++K L+D GAD N  D  G + +  A+++G++ + + L    + +N  A++    WTPLM A  +G L +  ++LI+
Sbjct:  106 WTPVMIAAMKGNLDIVSLLTESGALLNRQTKDGRTALYLAVQEGHVELSKYLTDQYPAAITQATNSGRFPTQAAAALTTCGAFEITQYLLSHAMIPLPNLLAHRDNSGRNILLDSAVSQSLELLKFLLDQGADANDADSLGRNMIHHAAMMGHLNVLKMLNTSTEGLNWDAQDAWDFWTPLMHAAREGHLDIV-KYLIE 303          
BLAST of mRNA_H-elongata_contig18116.4839.1 vs. uniprot
Match: A0A7R8WIW9_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8WIW9_9CRUS)

HSP 1 Score: 81.3 bits (199), Expect = 6.110e-14
Identity = 78/237 (32.91%), Postives = 107/237 (45.15%), Query Frame = 1
Query:   10 LQHGAQELLQSVNSDMW--TPLMIACDAGS----------LETVRVLVDAGANLNAHDKDSRTVLDIAVSRNHLLLVCYLRT-----------EGAFSSTEFWHARRAAGDAPRLTGILETHKHMVHTLDNNGRTALLLACVGG---------QVDVVKALVDAGADVNFRDPSGMSPLSVASVIGNVPLARYLMHNDKVNLSARNNAGWTPLMQAVVKGDLTMASRFLIDRGASVN 624
            LQ GAQ   +    D W  TPL++A    S          L+ V++LVDAGAN+   DKD  + L  A    HL +  +L T           +G  S T     R        +  IL  H   V   DN  RT+LLLA +GG         Q+  VK L++AGA+V  RD SG + L  A+    + +A+YL+  D      +N+ G T L  A  K    + S FL+  GA V+
Sbjct:  952 LQQGAQVDAE----DGWKRTPLLLAIGWSSSSYFPNEQDRLQVVKILVDAGANIRHCDKDGNSALHYATKNCHLSIAQHLLTIDPSLCLVKNSQGKISLTL---QRAVEWGNSAVISILIQHGAQVDEEDNEKRTSLLLA-IGGDSSLSHEKNQLQCVKVLIEAGANVLHRDSSGHNALRYATRKHYMSIAQYLLTVDPSLCRVKNSQGKTELHNAADKAQPALIS-FLLQHGADVD 1179          
BLAST of mRNA_H-elongata_contig18116.4839.1 vs. uniprot
Match: A0A3P4LCZ8_GULGU (Pre-SET domain-containing protein (Fragment) n=1 Tax=Gulo gulo TaxID=48420 RepID=A0A3P4LCZ8_GULGU)

HSP 1 Score: 80.1 bits (196), Expect = 1.240e-13
Identity = 71/223 (31.84%), Postives = 102/223 (45.74%), Query Frame = 1
Query:    7 MLQHGAQELLQSVNSDMWTPLMIACDAGSLETVRVLVDAGANLNAHDKDSRTVLDIAVSRNHLLLVCYLRTEGAF-----SSTEFWHARRAAGDAPRLTGILETHKHMVHTLDNNGRTALLLACVGGQVDVVKALVDAGADVNFRDPSGMSPLSVASVIGNVPLARYLMHNDKVNLSARNNAGWTPLMQAVVKGDLTMASRFLIDRGASVNDASFDEESVFDL 660
            ML        QS      TPL  A   GS+E   VL+ AGAN+NA DK  RT L  AV  NHL    Y+            ST   HA +  G+   ++ +L T +  V+  D+ G T ++ A     ++V++ L+  GADV   D      L  AS  G+  +A  L+ N + +L A N  G TPL  A  +        FL  RGA+    + + ++ +DL
Sbjct:  285 MLLDNLDPNFQSDQQSKRTPLHAAAQKGSVEICHVLLQAGANINAVDKQQRTPLMEAVVNNHLEAARYMVQRRPLPQEEDGSTCLHHAAKI-GNLEMVSLLLSTGQVDVNAQDSGGWTPIIWAAEHKHIEVIRMLLTRGADVTLTDNEENICLHWASFTGSAAIAEVLL-NARCDLHAVNYHGDTPLHIAARESYHDCVLLFL-SRGANPELRNKEGDTAWDL 504          
BLAST of mRNA_H-elongata_contig18116.4839.1 vs. uniprot
Match: UPI001EB0A008 (uncharacterized protein LOC124148037 isoform X1 n=4 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB0A008)

HSP 1 Score: 79.3 bits (194), Expect = 2.820e-13
Identity = 65/229 (28.38%), Postives = 110/229 (48.03%), Query Frame = 1
Query:   34 LQSVNSDMWTPLMIACDAGSLETVRVLVDAGANLNAHDKDSRTVLDIAVSRNHLLLVCYLRTEGAFSSTEFWHARR-----AAGDAPRLTGILETHKHMVHTLDNNGRTALLLACVGGQVDVVKALVDAGADVNFRDPSGMSPLSVASVIGNVPLARYLMHNDKVNLSARNNAGWTPLMQAVVKGDLTMASRFLIDRGASVNDASFDEESVFDLARRLAGPEIQQYIAS 705
            L  V++D  + L  AC  G++  V+ L+ + +N+N    +  T + +A    H  +  +L ++GA  S              AGD   +   L +  + ++    NGRT +++A V G   V   L   GAD++  D  G S L +A   GN+ + ++L+ +  +N   +N  GWTP+M A VKG  +M   FL+ +GA ++    D  S+  LA +     I Q + S
Sbjct: 1780 LSLVDTDGDSLLHFACAGGNMTIVQHLM-SDSNINQRGVNGWTPIMVAAFNGHKSVFDFLVSKGADLSLVHTDGNSLLHLACAGDNMTIVQHLISDSN-INQRGRNGRTPIMVAAVKGHKSVFDFLESKGADLSLVDTDGDSLLHLAFQEGNMTIVQHLISDSNINQRGKN--GWTPIMDAAVKGHKSMFD-FLVSKGADLSLVDTDGNSLLYLACQGGNMAIVQRLIS 2003          
BLAST of mRNA_H-elongata_contig18116.4839.1 vs. uniprot
Match: A0A8C7BBX1_NEOVI (Euchromatic histone lysine methyltransferase 2 n=1 Tax=Neovison vison TaxID=452646 RepID=A0A8C7BBX1_NEOVI)

HSP 1 Score: 78.6 bits (192), Expect = 4.760e-13
Identity = 69/218 (31.65%), Postives = 96/218 (44.04%), Query Frame = 1
Query:    7 MLQHGAQELLQSVNSDMWTPLMIACDAGSLETVRVLVDAGANLNAHDKDSRTVLDIAVSRNHLLLVCYLRTEGAFSSTEFWHARRAAGDAPRLTGILETHKHMVHTLDNNGRTALLLACVGGQVDVVKALVDAGADVNFRDPSGMSPLSVASVIGNVPLARYLMHNDKVNLSARNNAGWTPLMQAVVKGDLTMASRFLIDRGASVNDASFDEESVFDL 660
            ML        QS      TPL  A   GS+E   VL+ AGAN+NA DK  RT L  AV  NHL    Y+   G    ++       AGD+   T  L          D+ G T ++ A     ++V++ L+  GADV   D      L  AS  G+  +A  L+ N + +L A N  G TPL  A  +        FL  RGA+    + + ++ +DL
Sbjct:  641 MLLDNLDPNFQSDQQSKRTPLHAAAQKGSVEICHVLLQAGANINAVDKQQRTPLMEAVVNNHLEAARYMVQRGGCVYSKVLLGGPWAGDSGLSTSSLSPRPQ-----DSGGWTPIIWAAEHKHIEVIRMLLTRGADVTLTDNEENICLHWASFTGSAAIAEVLL-NARCDLHAVNYHGDTPLHIAARESYHDCVLLFL-SRGANPELRNKEGDTAWDL 851          
BLAST of mRNA_H-elongata_contig18116.4839.1 vs. uniprot
Match: A0A8C7ERQ1_NEOVI (Euchromatic histone lysine methyltransferase 2 n=1 Tax=Neovison vison TaxID=452646 RepID=A0A8C7ERQ1_NEOVI)

HSP 1 Score: 78.6 bits (192), Expect = 4.770e-13
Identity = 69/218 (31.65%), Postives = 96/218 (44.04%), Query Frame = 1
Query:    7 MLQHGAQELLQSVNSDMWTPLMIACDAGSLETVRVLVDAGANLNAHDKDSRTVLDIAVSRNHLLLVCYLRTEGAFSSTEFWHARRAAGDAPRLTGILETHKHMVHTLDNNGRTALLLACVGGQVDVVKALVDAGADVNFRDPSGMSPLSVASVIGNVPLARYLMHNDKVNLSARNNAGWTPLMQAVVKGDLTMASRFLIDRGASVNDASFDEESVFDL 660
            ML        QS      TPL  A   GS+E   VL+ AGAN+NA DK  RT L  AV  NHL    Y+   G    ++       AGD+   T  L          D+ G T ++ A     ++V++ L+  GADV   D      L  AS  G+  +A  L+ N + +L A N  G TPL  A  +        FL  RGA+    + + ++ +DL
Sbjct:  650 MLLDNLDPNFQSDQQSKRTPLHAAAQKGSVEICHVLLQAGANINAVDKQQRTPLMEAVVNNHLEAARYMVQRGGCVYSKVLLGGPWAGDSGLSTSSLSPRPQ-----DSGGWTPIIWAAEHKHIEVIRMLLTRGADVTLTDNEENICLHWASFTGSAAIAEVLL-NARCDLHAVNYHGDTPLHIAARESYHDCVLLFL-SRGANPELRNKEGDTAWDL 860          
BLAST of mRNA_H-elongata_contig18116.4839.1 vs. uniprot
Match: UPI00159C94F0 (histone-lysine N-methyltransferase EHMT2 isoform X1 n=2 Tax=Hippoglossus stenolepis TaxID=195615 RepID=UPI00159C94F0)

HSP 1 Score: 78.6 bits (192), Expect = 4.790e-13
Identity = 65/195 (33.33%), Postives = 96/195 (49.23%), Query Frame = 1
Query:    7 MLQHGAQELLQSVNSDMWTPLMIACDAGSLETVRVLVDAGANLNAHDKDSRTVLDIAVSRNHLLLVCYLRTEGAF-------SSTEFWHARRAAGDAPRLTGILETHKHMVHTLDNNGRTALLLACVGGQVDVVKALVDAGADVNFRDPSGMS--PLSV----ASVIGNVPLARYLMHNDKVNLSARNNAGWTPL 552
            ML  G     Q  + +  + L  A   G LE   +LV AGA ++A DKD RT L  A+  NH+ +  YL    A          T   HA +  G+   ++ +LET +  V+  D+ G T ++ A     VDV+K L++ GADV   D S +S   L+V    A+  GNV +A  ++ N   +L++ N  G TPL
Sbjct:  668 MLMEGIDPTYQPDSQNRRSALHAAAQRGLLEVCYMLVQAGAQVDAQDKDLRTPLVEAIINNHIEVARYLVQNSACVYHVEEDGYTGLHHAAKQ-GNLEMVSMLLETGQVDVNAQDSGGWTPIIWAAEHKHVDVIKVLLNRGADVTINDKSPLSLQELNVCLHWAAYAGNVDIAELVL-NAGCSLASVNMHGDTPL 860          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18116.4839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTT1_ECTSI9.210e-6450.65Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KQW0_9PHAE2.070e-5049.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0B7N6H4_9FUNG1.900e-1730.59Abhydrolase_3 domain-containing protein n=1 Tax=Pa... [more]
A0A8H7UL56_9FUNG3.450e-1631.66Uncharacterized protein n=1 Tax=Mucor plumbeus Tax... [more]
A0A7R8WIW9_9CRUS6.110e-1432.91Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]
A0A3P4LCZ8_GULGU1.240e-1331.84Pre-SET domain-containing protein (Fragment) n=1 T... [more]
UPI001EB0A0082.820e-1328.38uncharacterized protein LOC124148037 isoform X1 n=... [more]
A0A8C7BBX1_NEOVI4.760e-1331.65Euchromatic histone lysine methyltransferase 2 n=1... [more]
A0A8C7ERQ1_NEOVI4.770e-1331.65Euchromatic histone lysine methyltransferase 2 n=1... [more]
UPI00159C94F04.790e-1333.33histone-lysine N-methyltransferase EHMT2 isoform X... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18116contigH-elongata_contig18116:889..4137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score223.8
Seed ortholog evalue8.5e-56
Seed eggNOG ortholog2880.D8LTT1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-28_002920.1
Exons6
Model size708
Cds size702
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930044.2019036-UTR-H-elongata_contig18116:888..8941622930044.2019036-UTR-H-elongata_contig18116:888..894Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18116 889..894 +
1691679259.1109426-UTR-H-elongata_contig18116:888..8941691679259.1109426-UTR-H-elongata_contig18116:888..894Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18116 889..894 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930044.2159534-CDS-H-elongata_contig18116:894..10021622930044.2159534-CDS-H-elongata_contig18116:894..1002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18116 895..1002 +
1691679259.124706-CDS-H-elongata_contig18116:894..10021691679259.124706-CDS-H-elongata_contig18116:894..1002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18116 895..1002 +
1622930044.2276964-CDS-H-elongata_contig18116:1777..19281622930044.2276964-CDS-H-elongata_contig18116:1777..1928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18116 1778..1928 +
1691679259.134264-CDS-H-elongata_contig18116:1777..19281691679259.134264-CDS-H-elongata_contig18116:1777..1928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18116 1778..1928 +
1622930044.2427666-CDS-H-elongata_contig18116:2399..25481622930044.2427666-CDS-H-elongata_contig18116:2399..2548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18116 2400..2548 +
1691679259.142216-CDS-H-elongata_contig18116:2399..25481691679259.142216-CDS-H-elongata_contig18116:2399..2548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18116 2400..2548 +
1622930044.2565904-CDS-H-elongata_contig18116:2779..28531622930044.2565904-CDS-H-elongata_contig18116:2779..2853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18116 2780..2853 +
1691679259.1498923-CDS-H-elongata_contig18116:2779..28531691679259.1498923-CDS-H-elongata_contig18116:2779..2853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18116 2780..2853 +
1622930044.27025-CDS-H-elongata_contig18116:3288..33901622930044.27025-CDS-H-elongata_contig18116:3288..3390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18116 3289..3390 +
1691679259.1577444-CDS-H-elongata_contig18116:3288..33901691679259.1577444-CDS-H-elongata_contig18116:3288..3390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18116 3289..3390 +
1622930044.2854211-CDS-H-elongata_contig18116:4019..41371622930044.2854211-CDS-H-elongata_contig18116:4019..4137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18116 4020..4137 +
1691679259.1690261-CDS-H-elongata_contig18116:4019..41371691679259.1690261-CDS-H-elongata_contig18116:4019..4137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18116 4020..4137 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18116.4839.1prot_H-elongata_contig18116.4839.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18116 895..4137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18116.4839.1

>prot_H-elongata_contig18116.4839.1 ID=prot_H-elongata_contig18116.4839.1|Name=mRNA_H-elongata_contig18116.4839.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=234bp
MLQHGAQELLQSVNSDMWTPLMIACDAGSLETVRVLVDAGANLNAHDKDS
RTVLDIAVSRNHLLLVCYLRTEGAFSSTEFWHARRAAGDAPRLTGILETH
KHMVHTLDNNGRTALLLACVGGQVDVVKALVDAGADVNFRDPSGMSPLSV
ASVIGNVPLARYLMHNDKVNLSARNNAGWTPLMQAVVKGDLTMASRFLID
RGASVNDASFDEESVFDLARRLAGPEIQQYIASK
back to top

mRNA from alignment at H-elongata_contig18116:889..4137+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18116.4839.1 ID=mRNA_H-elongata_contig18116.4839.1|Name=mRNA_H-elongata_contig18116.4839.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3249bp|location=Sequence derived from alignment at H-elongata_contig18116:889..4137+ (Himanthalia elongata Himel1 dioecious)
AGGTACATGCTGCAGCACGGGGCGCAGGAGCTTCTCCAATCAGTGAACTC GGACATGTGGACCCCGCTCATGATCGCGTGCGACGCCGGCAGCCTCGAAA CCGTCCGCGTGCTGGTGTGACTCCTGAGCACGTCGCCGGCATGTCCCTCG TGCATATTACCCATGGGGATATATTACAAACTGTAAATGATGACGGCCGT GTCTTCGATGCCATCACGGGGAATGGTGTCGCCCGGCCCCATTTCCGACT TTCTCTGGTGTCCCTGCGTTGCGCGCTGTTGTGTTGTAGGGGGCTGTTTG ATAGCCCCCCTCTAAGAATCGAGGCCTATATGACCCCCCTGATCTTATGT TTGATGTGGGACGGGCCGAGGTAGGGTTGTCTCTTGTGGCATGGAGATGT CAAAGTACAAGTTATCGGGGCATGGTGTTGGTCATGAAGCGTCTCCTCTT GAACTCAGAGACCTGGGTCAAAGAGTCATAAAACGTCGACTAAACAGTGG AGAGTCGGAAAGCCCTATTAATAGCGCAACCAGTAACCTGTGAGCAACAC TTCGCCAGAAACGTTCATGAGCACATTATAATCCTAGTGCGTCACACGTA TACCGCTGTGTGTGCTGCATGCGTACGGCGCTTATGTATTCGCGGAGAAA TCAAAGACTCTCTGTGGTGGACATAGTATAGTCACGCCTGCTGAATGTCC AACACGTATTGACCATTTTGTCCAATAAACCCATGTAAACAGGTCGGCGC CACAAACGGAGTCTGGCCGACGAAAACCCGGCTTGTTTCTCCGTCCCGTC ATTGTTGGGATGCATGGCATATGTCTGTTAAGCTACAACGTCCATTAACA CAGGTGTACCCTCCCCGCCGCCGACGCGGGTGCTCTTAGGTGGACGCCGG TGCTAACTTGAACGCACATGACAAGGACTCCCGCACGGTGCTCGACATCG CCGTGAGTCGTAACCATCTTTTGCTCGTGTGCTACCTCAGGACGGAGGGG GCGTTCTCTTCCACCGAATTTTGGCACGCTAGGAGAGCCGGTTAGTACCT ATCGGTGCCATATATGAAACAGCTCCCCCCCACCCCCCCGCCCTCTACCT TCCCTCTACCTTGCCCAAAAGACAACCAGTGGTAAAACGCTACAGGGCAA CCGATTTCATTTAGGTGGAGTATCTGTCACATTCCCTGCCGCTAGCATGA AATCGTTTTCGTCAAACAACGGGGGTAGATGTTATGCCTCCCAGGTGTCT TTCCAAAACAAAAAACGAAGGAGGGCGGGGGGGGGTGTTTATAGATATAC GCCTGGCCTACCGCGTCACCTACGGTGCGAGGTTGAAGACGATGGGCACG CGCACCCCCCCCAAGAGAGTAAGGGACGGGCATGATCGTTTGTTTCCTCC CCACCCTTTCCTCTCCCTCGAGGTGTGTGATGCCACCAAAAATACACAGT CCCTTTGTACGCACGTACAAAATGCTGAACCTTTCATGACGCGACCCTGG ACCACTCGCAGCAGGCGATGCCCCGAGGTTGACGGGAATATTAGAAACCC ATAAGCACATGGTCCACACATTGGACAATAATGGTAGGACGGCGCTACTC CTGGCTTGCGTCGGAGGACAGGTGGACGTGGTGAAGGCTCTTGTGGACGC TGGGGCAGACGTGAGCTCTCCCTCGGAGTGCCAATACCATCGGTAGTCAG TGGCAGTCGTCGGTAGTGAGAGATTATATACATAGTTTAATTATACCTAT TATATAGATATCCGTGCTTGGGACGGGTTTGACGCCCTCGTTTTAGTTCG AGTTACATCACCTATGTTGTCCCCTGCAGGCGGCATATCGAAATTCAGCG TGTATACATTCGTCGTCCGTCGTGATGTTCTGGTGAGCCAGGTGAACTTC CGGGATCCGTCAGGGATGTCGCCTCTTAGCGTGGCCTCCGTGATCGGCAA TGTTCCCCTCGCAAGGTGCGTGTTTGTGTAACGCCGTTGGCGGTGTGCAG CTCCCCGCCCCCCCCAAGAAGAAAATATAGTGTATTTACCCGCCGATCGA TTTTCTGTCGACCAGGCCGAAAGATACGAAGTACGGGGTATTTTATATAC ATGTAAAAAATCTCAGCAAGATTTATCTGGAGATACATTTTTCTCTTGCA AGGTTGGTACGTTATTACAGATATAACGAGTCCGGTGGAGGGACATCGAT ATCTGTCGAAAACAGCCGCGAATACAACGTGCGCGCGCAAGAGGGGGGGC GGTGGGAAAATCACGATGTCTTGAAGGATCTTCGTGCCGCGAACAAACAT CTCACCTGACGACCGCGTGCTGTTGCGGCTTGTGCGGTCCCGATTTTATC GGTCGTGCGGATCCACAATGGTTGGCAAACATTTTTAACCGCCACCCCAG GTACCTTATGCATAACGACAAGGTAAACCTTTCCGCGAGAAACAACGCGG GGTGGACGCCTCTGATGCAAGCCGTCGTGAAGGGTGACCTCACCATGGCA AGGTGAGTGGGAAATGCTGCCGCCCACCCCCCCCCACCCCCCGTACCCCG CCCCCACATAACAAAAACCGACCCCTCCCGCTACGCCCACAACACAANNN NNNNNNNGGCCTCCGTGATCGGCAATGTTCCCCTCGCAAGGTGCGTGTTT GTGTAACGCCGTTGGCGGTGTGCAGCTCCCCACCCCCCCCACTCCATTCC CCACATCTCTAAAGAGTTAATGCAGACGTTTCGCGCGGGACCTGTTACCA AACTGTATGCCGCAACGAAGTCAAGATGGATTAAATGCGTAGATTCCGTG CGTTTCTCAAATCCTGCGTGGACTCTCCACCCATTTCACTATTTAACACC CCCTTACTCCACCACCATCGCAAAATCCCTCATGCTTTCCCTCGTTCTGC TAAGGTTCACCAGATTCGATAACGTTTTCGAGAAGTTGACTCAATCCCTA TAGCTATATCTATCAATAATGGTGCGATTTGACATCAGACGACGTAAGCA GGAAAGTTTAGGGCAGCCGGAGCAATAACGTGGGTACGTGGGTTACCGAG GGATCAAGAAAAATATGTGAAAAACCTTCGCCGATTGAATGTCGTAACGC GGTCCCTCTTTCCCTCTCCCGGGAAAAAAAGCAGGTTTCTGATCGACAGA GGGGCCTCGGTCAACGATGCAAGCTTTGACGAGGAATCGGTTTTCGATCT GGCGAGGCGTCTCGCCGGCCCAGAGATTCAGCAGTACATCGCATCAAAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig18116:889..4137+

>mRNA_H-elongata_contig18116.4839.1 ID=mRNA_H-elongata_contig18116.4839.1|Name=mRNA_H-elongata_contig18116.4839.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1404bp|location=Sequence derived from alignment at H-elongata_contig18116:889..4137+ (Himanthalia elongata Himel1 dioecious)
ATGCTGCAGCACGGGGCGCAGGAGCTTCTCCAATCAGTGAACTCGGACAT
GTGGACCCCGCTCATGATCGCGTGCGACGCCGGCAGCCTCGAAACCGTCC
GCGTGCTGATGCTGCAGCACGGGGCGCAGGAGCTTCTCCAATCAGTGAAC
TCGGACATGTGGACCCCGCTCATGATCGCGTGCGACGCCGGCAGCCTCGA
AACCGTCCGCGTGCTGGTGGACGCCGGTGCTAACTTGAACGCACATGACA
AGGACTCCCGCACGGTGCTCGACATCGCCGTGAGTCGTAACCATCTTTTG
CTCGTGTGCTACCTCAGGACGGAGGGGGCGTTCTCTTCCACCGAATTTTG
GCACGCTAGGAGAGCCGGTGGACGCCGGTGCTAACTTGAACGCACATGAC
AAGGACTCCCGCACGGTGCTCGACATCGCCGTGAGTCGTAACCATCTTTT
GCTCGTGTGCTACCTCAGGACGGAGGGGGCGTTCTCTTCCACCGAATTTT
GGCACGCTAGGAGAGCCGCAGGCGATGCCCCGAGGTTGACGGGAATATTA
GAAACCCATAAGCACATGGTCCACACATTGGACAATAATGGTAGGACGGC
GCTACTCCTGGCTTGCGTCGGAGGACAGGTGGACGTGGTGAAGGCTCTTG
TGGACGCTGGGGCAGACCAGGCGATGCCCCGAGGTTGACGGGAATATTAG
AAACCCATAAGCACATGGTCCACACATTGGACAATAATGGTAGGACGGCG
CTACTCCTGGCTTGCGTCGGAGGACAGGTGGACGTGGTGAAGGCTCTTGT
GGACGCTGGGGCAGACGTGAACTTCCGGGATCCGTCAGGGATGTCGCCTC
TTAGCGTGGCCTCCGTGATCGGCAATGTTCCCCTCGCAAGGTGAACTTCC
GGGATCCGTCAGGGATGTCGCCTCTTAGCGTGGCCTCCGTGATCGGCAAT
GTTCCCCTCGCAAGGTACCTTATGCATAACGACAAGGTAAACCTTTCCGC
GAGAAACAACGCGGGGTGGACGCCTCTGATGCAAGCCGTCGTGAAGGGTG
ACCTCACCATGGCAAGGTACCTTATGCATAACGACAAGGTAAACCTTTCC
GCGAGAAACAACGCGGGGTGGACGCCTCTGATGCAAGCCGTCGTGAAGGG
TGACCTCACCATGGCAAGCAGGTTTCTGATCGACAGAGGGGCCTCGGTCA
ACGATGCAAGCTTTGACGAGGAATCGGTTTTCGATCTGGCGAGGCGTCTC
GCCGGCCCAGAGATTCAGCAGTACATCGCATCAAAGCAGGTTTCTGATCG
ACAGAGGGGCCTCGGTCAACGATGCAAGCTTTGACGAGGAATCGGTTTTC
GATCTGGCGAGGCGTCTCGCCGGCCCAGAGATTCAGCAGTACATCGCATC
AAAG
back to top