mRNA_H-elongata_contig18107.4836.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18107.4836.1
Unique NamemRNA_H-elongata_contig18107.4836.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig18107.4836.1 vs. uniprot
Match: D8LKQ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKQ0_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 3.490e-73
Identity = 123/178 (69.10%), Postives = 139/178 (78.09%), Query Frame = 3 
Query:   21 TKYVLTMMEAKGFDKNAESSPRASQSKGFQETPVAGRGEEG--GVGAWEKEYKAYIKRTGQYLCSMSWEGHEEMGRGAIFANYDDALAGGKLNDADKFGGIPSMYVPLTEFQTMMSAGKP-GEENDLGQILRRVESYRPEEEFVVVFQAEGVMGADIVRPSVSPPEMAKHVTRSTGAS 545
            T     +M AKGF K+ E    A  + G +E      G EG  GVG+WEKEYKAYIKRTGQYLCSMSWEGH+EMGRGAIFANYDDA    KLN+ DKFGGIPSMYVPLTEF++M +AG+  GEE+DLGQI+RRV+ YRPE EFVVVFQA GVMGADIVRP+VSPPEMAKHV +S G S
Sbjct:   97 TAATARVMAAKGFGKSVEPPSPAPATTGGEEGGGKAPGSEGLSGVGSWEKEYKAYIKRTGQYLCSMSWEGHQEMGRGAIFANYDDARKEDKLNETDKFGGIPSMYVPLTEFESMKAAGQEAGEEDDLGQIVRRVKDYRPEREFVVVFQAAGVMGADIVRPNVSPPEMAKHVVKSDGVS 274
[Close]
BLAST of mRNA_H-elongata_contig18107.4836.1 vs. uniprot
Match: A0A836CCX0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCX0_9STRA)

HSP 1 Score: 159 bits (402), Expect = 7.280e-44
Identity = 81/180 (45.00%), Postives = 114/180 (63.33%), Query Frame = 3 
Query:   63 KNAESSPRASQSKGFQETPVAGRGEEGGVGAWEKEYKAYIKRTGQYLCSMSWEGHEEMGRGAIFANYDDALAGGKLNDAD-KFGGIPSMYVPLTEFQTMM-SAGKPGEENDLGQILRRVESYRPEEEFVVVFQAEGVMGADIVRPSVSPPEMAKHVTRSTGASRANMSPRAPWAQDDSAG 596
            K++++S  +   KGF ++             WE+EYKA+I+R G Y+CS+SW+ +E+MGRGA+++NYD   A G L++AD K GGIPSM+ PL EF+ M+  A   GE NDL QI++R++ Y P +EFVVVFQA GV GADI  PS+ PP++AK V  +     A  + R     D   G
Sbjct:    5 KHSKASTSSGTGKGFGKSQFGAPPPVADTALWEREYKAFIRRCGAYVCSLSWQAYEKMGRGAVYSNYDGGKAAGTLSEADEKLGGIPSMFCPLHEFEAMVPGAAAKGEHNDLDQIIQRIKQYDPTKEFVVVFQAGGVCGADICSPSIPPPDVAKQVEAAIDIEAAARTQRVAMGADGRLG 184
[Close]
BLAST of mRNA_H-elongata_contig18107.4836.1 vs. uniprot
Match: W7TWP7_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWP7_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.070e-33
Identity = 69/128 (53.91%), Postives = 84/128 (65.62%), Query Frame = 3 
Query:  156 WEKEYKAYIKRTGQYLCSMSWEGHEEMGRGAIFANYDDA---LAGGKLNDADKFGGIPSMYVPLTEFQTMMSAGKPG----EENDLGQILRRVESYRPEEEFVVVFQAEGVMGADIVRPSVSPPEMAK 518
            WE EY AY+KR G +LC+MSW G++  GRGAI A Y+D      G  L++ D+  G+PSMYV L  +     A K G    E  DL QIL RV SY PE  FVVVFQA G+MGADIV P+VSPP+MA+
Sbjct:   74 WEAEYLAYVKRNGAHLCAMSWRGYQAEGRGAILAKYEDKDMDQEGRTLSEIDRVSGVPSMYVSLARWMESGQAAKDGPAQAERQDLQQILDRVISYEPERAFVVVFQAHGLMGADIVTPNVSPPDMAE 201
[Close]
BLAST of mRNA_H-elongata_contig18107.4836.1 vs. uniprot
Match: A0A7S2WW30_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW30_9STRA)

HSP 1 Score: 130 bits (328), Expect = 6.370e-33
Identity = 73/180 (40.56%), Postives = 101/180 (56.11%), Query Frame = 3 
Query:   69 AESSPRASQSKGFQETPVAGRGEEGGVGAWEKEYKAYIKRTGQYLCSMSWEGHEEMGRGAIFANYDDALAGGKLNDADKFGGIPSMYVPLTEFQTMMSAGKPGEENDLGQILRRVESYRPEEEFVVVFQAEGVMGADIVRPSVSPPEMAKHVTRSTGASRANMSPRAPWAQDDSAGAIDV 608
            A + PR       +   VA  G+      WEK+YK+ + R G+ L +MSW+G E+MGRG I ANYD+  A     ++DK+G IPSMYVP  + +        GEE+   QI  R+ESY PE EFVVVF AEG+MG D+V P + PPE+ +      G +  N +    +A++     IDV
Sbjct:   32 AFTQPRGRWFPAVRAAAVASPGDASVQERWEKQYKSMLARIGEDLTAMSWDGFEKMGRGVILANYDNVTA---ATESDKYGSIPSMYVPEAQIKAGQINLAAGEESSFDQIASRLESYDPEREFVVVFHAEGLMGTDVVTPCIPPPEVCRSRRMLKGYTLTNPNANGGFAKNKEV-VIDV 207
[Close]
BLAST of mRNA_H-elongata_contig18107.4836.1 vs. uniprot
Match: A0A7S3EJF2_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EJF2_9RHOD)

HSP 1 Score: 116 bits (290), Expect = 8.380e-28
Identity = 69/168 (41.07%), Postives = 100/168 (59.52%), Query Frame = 3 
Query:   15 IPTKYVLTMMEAKGFDKNAES----SPRASQSKGF-------QETPVAGRGEEGGVGAWEKEYKAYIKRTGQYLCSMSWEGHEEMGRGAIFANYDDALAGGKLNDADKFGGIPSMYVPLTEFQTMMSAGKPGEENDLGQILRRVESYRPEEEFVVVFQAEGVMGADIV 485
            + T +V T +  +GF  +  S    SP  S +KGF        E P A     G VG W+KEYKA++KR G+ +C+M ++G+  +GRGA+FANY +A+   + +D D    +PSMYVP+ + +   S  +P +  D+  I  RV  Y PE++FVVVF+  GVMGADIV
Sbjct:    6 LGTCFVGTGIGCRGFVDSRRSACRRSPVVSLAKGFGKSRSSADEIPQAQSA--GQVGVWQKEYKAFLKRNGKDICAMCYDGYRRLGRGAVFANYSEAMDKVE-SDIDLAQSVPSMYVPMDKLRESASR-RPSQGGDMKHITDRVARYDPEKQFVVVFECNGVMGADIV 169
[Close]
BLAST of mRNA_H-elongata_contig18107.4836.1 vs. uniprot
Match: A0A0G4ERJ3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ERJ3_VITBC)

HSP 1 Score: 101 bits (251), Expect = 1.870e-21
Identity = 63/164 (38.41%), Postives = 91/164 (55.49%), Query Frame = 3 
Query:   54 GFDKNAESSPRASQSKG-FQETPVAGRGEEGGVGAWEKEYKAYIKRTGQYLCSMSWEGHEEMGRGAIFANYDDALAG-GKLND-------ADKFGGIPSMYVPLTEFQTMMSAGKPGEENDLGQILRRVESYRPEEEFVVVFQAEGVMGADIVRPSVSPPEMAK 518
            GF    E  PR   S G  Q TP+  +        WEK Y+  ++ +G   C+ +W G+E+MGRGA+   ++    G G+  D       A K    P+MY P  +F     AG   EE+ L Q+ RR++SY P +EFVVVFQ+ G+MGADIV+P+++P E A+
Sbjct:   69 GFGPKTERRPRFQFSYGGSQLTPMEQQQ------LWEKSYQENVRASGFSWCAQAWMGYEKMGRGAVMVYHELKQEGEGEGGDGAATATKATKMDVAPTMYAPAEKFSK--KAGSREEESHLAQVRRRLDSYDPHKEFVVVFQSSGLMGADIVKPNMAPAEAAR 224
[Close]
BLAST of mRNA_H-elongata_contig18107.4836.1 vs. uniprot
Match: A0A7S2ZY89_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZY89_9RHOD)

HSP 1 Score: 72.4 bits (176), Expect = 1.200e-11
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 3 
Query:  240 RGAIFANYDDALAGGKLNDADKFGGIPSMYVPLTEFQTMMSAGKPGEENDLGQILRRVESYRPEEEFVVVFQAEGVMGADIVRP 491
            RGA+FANY +A+   + +D D    +PSMYVP+ + +   S  +P +  D+  I  RV  Y PE++FVVVF+  GVMGADIV P
Sbjct:    1 RGAVFANYSEAMDKVE-SDIDLAQSVPSMYVPMDKLRESASR-RPSQGGDMKHITDRVARYDPEKQFVVVFECNGVMGADIVTP 82
[Close]
BLAST of mRNA_H-elongata_contig18107.4836.1 vs. uniprot
Match: A0A6H5JX16_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JX16_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.100e-10
Identity = 41/120 (34.17%), Postives = 66/120 (55.00%), Query Frame = 3 
Query:  156 WEKEYKAYIKRTGQYLCSMSWEGHEEMGRGAIFANYDDALAGGKLNDADKFGGIPSMYVPLTEFQTMMSAG-KPGEENDLGQILRRVESYRPEEEFVVVFQAEGVMGADIVRPSVSPPEM 512
            W +E    +   G+ LCS+++EG+ + GRG IF N D  L+    N         +++  L E  T  S+  KP    D  QI++R + Y PE  FV+VF  +G++G  ++RPS++P E+
Sbjct:  112 WREEMLRVLGEEGEMLCSLAYEGYLDRGRGVIFVNVDMGLS--SSNKGHDGAPCHAVFCSLEEVVTERSSRVKPA---DQMQIIQRCQEYDPEAGFVLVFGYKGMLGVQVIRPSMAPGEV 226
[Close]
BLAST of mRNA_H-elongata_contig18107.4836.1 vs. uniprot
Match: A0A7S1XG02_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XG02_9RHOD)

HSP 1 Score: 56.6 bits (135), Expect = 7.450e-6
Identity = 36/122 (29.51%), Postives = 62/122 (50.82%), Query Frame = 3 
Query:  156 WEKEYKAYIKRTGQYLCSMSWEGHEEMGRGAIFANY---DDALAGGKLNDADKFGGI---PSMYVPLTEFQTMMSAG---KPGEENDLGQILRRVESYRPEEEFVVVFQAEGVMGADIVRPS 494
            W   +  ++++ G  + S +  G +  G GA+FAN+    +      + D+   G +   P  ++ L  F+ M   G     G   +   I+R++E+Y PE +FVVVFQ  GV+  DIV+P+
Sbjct:   74 WRDGFAQFVQQYGPEMESAASAGFQAEGPGAVFANFAAISETAPQEAVADSADAGAVVVGPFFFMSLGNFRGMNQEGLDDPSGLGENFRHIVRQMEAYDPETQFVVVFQHGGVVSCDIVQPT 195
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18107.4836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LKQ0_ECTSI3.490e-7369.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CCX0_9STRA7.280e-4445.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TWP7_9STRA2.070e-3353.91Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2WW30_9STRA6.370e-3340.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3EJF2_9RHOD8.380e-2841.07Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A0G4ERJ3_VITBC1.870e-2138.41Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S2ZY89_9RHOD1.200e-1146.43Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A6H5JX16_9PHAE1.100e-1034.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1XG02_9RHOD7.450e-629.51Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18107contigH-elongata_contig18107:1647..5637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score239.2
Seed ortholog evalue1.6e-60
Seed eggNOG ortholog2880.D8LKQ0
EggNOG OGs2F0BR@1,2T1HY@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_004350.1
Exons4
Model size1042
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18107.4836.1prot_H-elongata_contig18107.4836.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18107 1685..5206 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930043.9289064-UTR-H-elongata_contig18107:1646..16841622930043.9289064-UTR-H-elongata_contig18107:1646..1684Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18107 1647..1684 +
1691679258.996219-UTR-H-elongata_contig18107:1646..16841691679258.996219-UTR-H-elongata_contig18107:1646..1684Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18107 1647..1684 +
1622930044.0037534-UTR-H-elongata_contig18107:5206..56371622930044.0037534-UTR-H-elongata_contig18107:5206..5637Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18107 5207..5637 +
1691679259.0496917-UTR-H-elongata_contig18107:5206..56371691679259.0496917-UTR-H-elongata_contig18107:5206..5637Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18107 5207..5637 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930043.9443395-CDS-H-elongata_contig18107:1684..18191622930043.9443395-CDS-H-elongata_contig18107:1684..1819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18107 1685..1819 +
1691679259.0063663-CDS-H-elongata_contig18107:1684..18191691679259.0063663-CDS-H-elongata_contig18107:1684..1819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18107 1685..1819 +
1622930043.9635873-CDS-H-elongata_contig18107:2416..25391622930043.9635873-CDS-H-elongata_contig18107:2416..2539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18107 2417..2539 +
1691679259.0148892-CDS-H-elongata_contig18107:2416..25391691679259.0148892-CDS-H-elongata_contig18107:2416..2539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18107 2417..2539 +
1622930043.9776828-CDS-H-elongata_contig18107:4125..43011622930043.9776828-CDS-H-elongata_contig18107:4125..4301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18107 4126..4301 +
1691679259.0231376-CDS-H-elongata_contig18107:4125..43011691679259.0231376-CDS-H-elongata_contig18107:4125..4301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18107 4126..4301 +
1622930043.990266-CDS-H-elongata_contig18107:5067..52061622930043.990266-CDS-H-elongata_contig18107:5067..5206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18107 5068..5206 +
1691679259.0390086-CDS-H-elongata_contig18107:5067..52061691679259.0390086-CDS-H-elongata_contig18107:5067..5206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18107 5068..5206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18107.4836.1

>prot_H-elongata_contig18107.4836.1 ID=prot_H-elongata_contig18107.4836.1|Name=mRNA_H-elongata_contig18107.4836.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp
MMEAKGFDKNAESSPRASQSKGFQETPVAGRGEEGGVGAWEKEYKAYIKR
TGQYLCSMSWEGHEEMGRGAIFANYDDALAGGKLNDADKFGGIPSMYVPL
TEFQTMMSAGKPGEENDLGQILRRVESYRPEEEFVVVFQAEGVMGADIVR
PSVSPPEMAKHVTRSTGASRANMSPRAPWAQDDSAGAIDV*
back to top

mRNA from alignment at H-elongata_contig18107:1647..5637+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18107.4836.1 ID=mRNA_H-elongata_contig18107.4836.1|Name=mRNA_H-elongata_contig18107.4836.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3991bp|location=Sequence derived from alignment at H-elongata_contig18107:1647..5637+ (Himanthalia elongata Himel1 dioecious)
CCTGTCCACGATCAATACCAACAAAATATGTCTTGACCATGATGGAAGCC
AAGGGCTTCGACAAGAACGCCGAGTCTTCTCCACGGGCTTCGCAGTCCAA
GGGGTTTCAGGAGACTCCGGTGGCCGGGAGGGGAGAGGAAGGCGGGGTGG
GTGCGTGGGAAAAAGAATACAAGGTGCTTAAGGGTGTTTGCGTATTTATT
AAATTGCACATAACCGCGCAATCCGGCCCTGCCATGCTAGTCCTCCTAGT
CTACACGCATTCATCCCAAAGAAGGATTATCACATTTGGTAGGAAAACCT
CTTATTACACGTGACAAAGGAGGTATACTCTCTCTCTAGTTCATATCTCA
GCCCTTAGCACCTTGTGCTTCCCTTTCTGCTTCCTTGTTCGCTTTATAGC
GTGTGCGTCTGCAGGTCCTATTCATAGTCGTGTTTGTACCACAGGTGCGA
CATCAGTGTTTATTAGTAGTATAGTAGAAGCCTGAGATGGAGAAGTGCTT
ATACCCATTTTCTGGAAAACAAAGGCAGCACCGGCAACAACCCCTCCCCC
CCCCAACTTCGTAACCAATGTATTCGTACTGTGGAAATCTTGGGGAGAAA
TTCGGTAATCCCGCAGCGTATCGTGTGCATTTGCTGTCTGCCTATGGAGT
TTCAAAATGAATATCGAGCAAGTATCGAGCGGGGAAATCGTTATTAATCC
CCGGGGTATGTTGACTCAATGTTGCCTGGGGTGCGCGCCCACCGCCCGCG
ACTCGCCTCTGACCGAATAGGCGTATATTAAGCGCACGGGGCAGTACCTG
TGCAGCATGAGCTGGGAGGGTCACGAGGAGATGGGCAGAGGAGCCATTTT
TGCCAACTACGATGATGCTCTGGCAGGAGGAAAACTAAACGACGTGAGAT
TGTGATCCGGGTTGTATCAGCTGCGTCATTCCGATCCTCGATTATCGCAG
GCTCGAGACCTTTTTCCCCGCTGACTCCAATTAATGTGGTAAATCATGGA
GTCTTACAGCTTGGGGTCCACCCGAGAGACGAGCCCATGGATCGACGGTG
CACGATCTGTACATAATTACGAACGCTAACGTACACAACCATGCTCGTAG
CCACCATCACAAACGAAAGCGCGTAAAGCTGTCGATTGTTGTGTTACGTC
CAATACTAAGTAGCGACCAACCGGTTCCGGCTTGTGTGACGAGTTTTTGC
TCAAAGGTAGTTATGTACCCATCGAACCTGACGATAGTTGGTTCCCTGGA
CTGCACCTTTCACGGCGCTAAGAAAATGTGGATGTTCTAATGGTTGGAAT
GATTTCATTTTATTTTATTTTATTTTTTTAATAAAGATATATAACACGAA
TCCTCCCGCCCGACTTCGCTACATTAGCCCGTAGACAACGAACGCAGTTT
GAAGTTTGAGGTACTAATATTACAGAACTGGTATATTATGATTATAGAGG
ATTACTGGCAGCATTTCAGACACTAGACTAGACGCTGTAGTCTTGTACCC
AAGGATATCGATGTGACGCGGTTAGGATTGTAGTTCTAACAGGGTGGTTA
GTTCGGGCAGAGTATTTTTGTGACGATTTGGGATCATAATCGATCACTGG
TGGTGCGTGCACGTGACGAGGGGACGTCACCAAGATGAAACCGGTTGATC
CTCGTAATGCGTCGTTACAACCTCGATCGGGATTGTCGTTTGATTGGTTG
GTCGATGTCCACGTAAGTTGTGTCTCCGTCGTTCTTCAGCTGTTGTGAGG
TATTGTGGTGTACTGTAATGTGCTGGACTCAGTAAGGACAATACGCATCA
AGCGTAAATCAGCAGCAGGTCATTGGACCGAACGCATTTTATTTTACTAC
TCGTATTTTTTTTCTTCTTCTTCTTTTTCTTATTACTGCTATTATTACTT
TTATTACTATTATTATTACTACTACTTTTATTATTATTATTTTACTAACA
TTATTATTATTATTACTTTTATTATTATATATTACTGCTATTTTTTGTTA
TCAGATTTTGGTTTGCTTGTACCTTTCTGTGTATCCTCTTCACCTATCTG
TGAGTCAAAGCAGAATGCTTGGGCCAATACCGCGTGCATTACCCTCCGCT
CGTGCCATTGCACTAAAATAGAAGTGGTGAAGGATCCCCACACTCTCGAG
TCAGCAAGTCATATATTGTATTTTGCGTTTCGGGTACTGTTTTGTATATG
TCTATAGTATCTCTCTCTATATAAGATACTTCGTATATATTGCCATCAAC
GATGTGACTTGTCCACTCCAATCCACGAGGTCAAGCACTTTGCAGCAGCG
GTGTCCATCGCGCTGCTATTACCCCCTTCTTCCCAACAACAACGCTCTGT
TCTCCCGAGGACGCGTGTTCACTGATTAAAGTTCTAATAGCTAAGACATG
CAAAACTTGAGTACACCCTGCCCTTTTCCCTCCCCTCCCCCTCCCCTCCC
TCCTCCTTTCCCTTCTCACCCATTAATAGGCCGATAAGTTCGGTGGAATA
CCATCGATGTACGTGCCGCTCACGGAGTTCCAAACCATGATGTCGGCGGG
AAAGCCCGGGGAAGAGAACGATCTCGGGCAGATCCTGAGACGCGTAGAGT
CTTACCGCCCGGAGGAGGAATTCGTCGTGGTATTTCAGGCTGAGGGAGTC
ATGGGGTGAGGATGAGGGTAAGGGTGGCCCGAAGGAAACCTGCTTGCTGC
GGGCGCGCGATTGAGCGTTTAGGATGTTTTGAATTTCCGTCGCAGAGGGC
GCGAGCCATTGTCTCTCGTTTTCAAGTAGCGTTTTTTGTTATCAATTTCT
ACAGCTCTAGAGAGTTTACTACGAGTGCATCGAGCAATAGCGATGAAGAA
AAATGGCCCTAATGGCCCTAATGATGGAGATAGTCTTAAGAGCGATTTAA
AGGCTACCACCGTAGTAATTTAGCTAAGATTATGAATTATACATTAATAG
TCATATTATAAAATATATGAAGTATGCGTTAAGGGCGTTACGTATTAACA
ATATTGATAACATTTGAGATTATGAAGCATGCATTGATTAAAAGAGTCCA
ATAATATTGTAAACCATAGTCTACATAAGTAGAGCGAGATTATGAATTAA
ACACTTTACAATAACAGAATGAGAATGAGGTCATGAAGAATCACAAGATG
CTCTTTTCCGCGTTTCTCGCTTAAAAACAATCGCCATTCCCTCGTACTAC
TAATACCATAATGCTAAAAGCCAAAGCCAGTAGATGCTGACTGCGCCCAT
TTATCATGACGAGCTATCACAGCGATAGAGAAGAGGTGTGCATGATGCAT
GTGAGCCAGCCAACCAACCCCCGAGTTGTTCATGTTGGATCAAAGCATCA
AACACCCCATTCGGATGTTTCGGGGCTCCACGCTCGCCGCGCTCGTAATT
TGACAAACAACGCTCCTGCAGCGCGGACATCGTGCGACCGAGTGTATCGC
CGCCGGAGATGGCCAAACACGTGACGAGGTCGACCGGTGCGTCTAGAGCT
AATATGTCACCGCGGGCGCCCTGGGCACAAGACGATAGCGCCGGCGCTAT
CGACGTATGATTATATCGGACGCCCAAAATGGGGCCGGGGCGCTGCACTC
TTCCCCCCATGTAGACGTCGGGAAAAAAACGAGGGTATAACGGAATTCGA
ACGCAACTCTGCTGTTCCATGATTTTTTTCACGTTCGTCGCAGGTCAGGT
CAGATCAGGTAGGGTCCTACGATAGAGTACCATTGAACAATATTGACTCG
AGGTCGTGGAATTTTTTTCTCGCTTTATTTTTCTGTTCGCTGGAGTCTTG
CTTCAGATTCGATCGTCTTCTACTATTATAGGTACCACTCTGTTCGTGAA
TAAATGTCCGGTATGGACAAAAATGCGGTCTAACTTTGTCGCAGTGTGTT
TAAAACCCCCCCAAAAACATCGGATTCGTGGCATACAGACGGGACTGTCA
GAACCACATTTTTTTAATTTTTCGTCAGTGAGTACACCCAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig18107:1647..5637+

>mRNA_H-elongata_contig18107.4836.1 ID=mRNA_H-elongata_contig18107.4836.1|Name=mRNA_H-elongata_contig18107.4836.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at H-elongata_contig18107:1647..5637+ (Himanthalia elongata Himel1 dioecious)
ATGATGGAAGCCAAGGGCTTCGACAAGAACGCCGAGTCTTCTCCACGGGC
TTCGCAGTCCAAGGGGTTTCAGGAGACTCCGGTGGCCGGGAGGGGAGAGG
AAGGCGGGGTGGGTGCGTGGGAAAAAGAATACAAGATGATGGAAGCCAAG
GGCTTCGACAAGAACGCCGAGTCTTCTCCACGGGCTTCGCAGTCCAAGGG
GTTTCAGGAGACTCCGGTGGCCGGGAGGGGAGAGGAAGGCGGGGTGGGTG
CGTGGGAAAAAGAATACAAGGCGTATATTAAGCGCACGGGGCAGTACCTG
TGCAGCATGAGCTGGGAGGGTCACGAGGAGATGGGCAGAGGAGCCATTTT
TGCCAACTACGATGATGCTCTGGCAGGAGGAAAACTAAACGACGCGTATA
TTAAGCGCACGGGGCAGTACCTGTGCAGCATGAGCTGGGAGGGTCACGAG
GAGATGGGCAGAGGAGCCATTTTTGCCAACTACGATGATGCTCTGGCAGG
AGGAAAACTAAACGACGCCGATAAGTTCGGTGGAATACCATCGATGTACG
TGCCGCTCACGGAGTTCCAAACCATGATGTCGGCGGGAAAGCCCGGGGAA
GAGAACGATCTCGGGCAGATCCTGAGACGCGTAGAGTCTTACCGCCCGGA
GGAGGAATTCGTCGTGGTATTTCAGGCTGAGGGAGTCATGGGGCCGATAA
GTTCGGTGGAATACCATCGATGTACGTGCCGCTCACGGAGTTCCAAACCA
TGATGTCGGCGGGAAAGCCCGGGGAAGAGAACGATCTCGGGCAGATCCTG
AGACGCGTAGAGTCTTACCGCCCGGAGGAGGAATTCGTCGTGGTATTTCA
GGCTGAGGGAGTCATGGGCGCGGACATCGTGCGACCGAGTGTATCGCCGC
CGGAGATGGCCAAACACGTGACGAGGTCGACCGGTGCGTCTAGAGCTAAT
ATGTCACCGCGGGCGCCCTGGGCACAAGACGATAGCGCCGGCGCTATCGA
CGTATGACGCGGACATCGTGCGACCGAGTGTATCGCCGCCGGAGATGGCC
AAACACGTGACGAGGTCGACCGGTGCGTCTAGAGCTAATATGTCACCGCG
GGCGCCCTGGGCACAAGACGATAGCGCCGGCGCTATCGACGTATGA
back to top