mRNA_H-elongata_contig181045.4834.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig181045.4834.1 vs. uniprot
Match: D8LHI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHI4_ECTSI) HSP 1 Score: 82.8 bits (203), Expect = 2.720e-17 Identity = 38/48 (79.17%), Postives = 44/48 (91.67%), Query Frame = 1
Query: 1 GVLGFSRGALLVSLCWVAILVYIIDRKWWQAAVWAVISATFSMVGIIH 144
G+LG RGA+LVSLCWVA+LV+IIDRKWWQA+VWAVISA F+ VGIIH
Sbjct: 436 GILGLKRGAILVSLCWVAMLVHIIDRKWWQASVWAVISACFTAVGIIH 483
BLAST of mRNA_H-elongata_contig181045.4834.1 vs. uniprot
Match: A0A7S2K3Q3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3Q3_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.240e-9 Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 1
Query: 1 GVLGFSRGALLVSLCWVAILVYIIDRKWWQAAVWAVISATFSMVGIIH 144
GVL + +G++L+SL WV +L+Y+IDRKW A VWA I A F+ GIIH
Sbjct: 70 GVLAWKQGSVLISLIWVCMLMYVIDRKWLSATVWATIGALFAASGIIH 117
BLAST of mRNA_H-elongata_contig181045.4834.1 vs. uniprot
Match: A0A5E8H852_9LEPT (Putative membrane protein n=1 Tax=Leptospira yanagawae serovar Saopaulo str. Sao Paulo = ATCC 700523 TaxID=1249483 RepID=A0A5E8H852_9LEPT) HSP 1 Score: 58.9 bits (141), Expect = 5.460e-9 Identity = 25/48 (52.08%), Postives = 38/48 (79.17%), Query Frame = 1
Query: 1 GVLGFSRGALLVSLCWVAILVYIIDRKWWQAAVWAVISATFSMVGIIH 144
GVL S+G L+ S+ W A++V+I++R+WW+A++WAVI+A S VG IH
Sbjct: 182 GVLSLSQGFLITSMIWAAMVVFILEREWWKASLWAVIAAVLSTVGWIH 229
BLAST of mRNA_H-elongata_contig181045.4834.1 vs. uniprot
Match: B0STY1_LEPBP (Putative permease putative transmembrane protein n=23 Tax=Leptospira TaxID=171 RepID=B0STY1_LEPBP) HSP 1 Score: 57.0 bits (136), Expect = 3.330e-8 Identity = 25/48 (52.08%), Postives = 38/48 (79.17%), Query Frame = 1
Query: 1 GVLGFSRGALLVSLCWVAILVYIIDRKWWQAAVWAVISATFSMVGIIH 144
GVL S+G L+ S+ W A++V+I++R+W +A+VWA+I+A SMVG IH
Sbjct: 442 GVLSLSQGFLITSMIWAAMVVFILEREWLKASVWAIIAAVLSMVGWIH 489
BLAST of mRNA_H-elongata_contig181045.4834.1 vs. uniprot
Match: A0A6H3NKW5_9LEPT (NCS2 family permease n=4 Tax=Leptospira TaxID=171 RepID=A0A6H3NKW5_9LEPT) HSP 1 Score: 53.9 bits (128), Expect = 4.070e-7 Identity = 23/48 (47.92%), Postives = 37/48 (77.08%), Query Frame = 1
Query: 1 GVLGFSRGALLVSLCWVAILVYIIDRKWWQAAVWAVISATFSMVGIIH 144
GVL S+G L+ S+ W A++V++++R+W +AA+WA I+A SM+G IH
Sbjct: 442 GVLALSQGFLITSMIWSAMVVFVLEREWNKAAIWATIAAILSMIGWIH 489
BLAST of mRNA_H-elongata_contig181045.4834.1 vs. uniprot
Match: R8ZYD9_9LEPT (Putative membrane protein n=20 Tax=Leptospira TaxID=171 RepID=R8ZYD9_9LEPT) HSP 1 Score: 53.5 bits (127), Expect = 5.570e-7 Identity = 24/48 (50.00%), Postives = 37/48 (77.08%), Query Frame = 1
Query: 1 GVLGFSRGALLVSLCWVAILVYIIDRKWWQAAVWAVISATFSMVGIIH 144
GVL S+G L+ S+ W A++V+I++R+W +AA+WA I+A SM+G IH
Sbjct: 442 GVLALSQGFLITSMVWSAMVVFILEREWNKAALWAFIAAVLSMIGWIH 489
BLAST of mRNA_H-elongata_contig181045.4834.1 vs. uniprot
Match: A0A7S2WT88_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WT88_9STRA) HSP 1 Score: 51.6 bits (122), Expect = 2.670e-6 Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 1
Query: 1 GVLGFSRGALLVSLCWVAILVYIIDRKWWQAAVWAVISATFSMVGIIH 144
G + S+ +LL+SL + LVYIIDRK+ QAA W +ISA FS+ GIIH
Sbjct: 454 GYVAMSKSSLLLSLLVTSTLVYIIDRKFLQAAAWCLISALFSVFGIIH 501
BLAST of mRNA_H-elongata_contig181045.4834.1 vs. uniprot
Match: A0A812JWC3_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812JWC3_9DINO) HSP 1 Score: 49.7 bits (117), Expect = 1.270e-5 Identity = 21/48 (43.75%), Postives = 35/48 (72.92%), Query Frame = 1
Query: 1 GVLGFSRGALLVSLCWVAILVYIIDRKWWQAAVWAVISATFSMVGIIH 144
G+ + G+LLV +CWVA+ V+IIDR +++A +WA +S S +G++H
Sbjct: 181 GLAAIAHGSLLVCICWVAMGVFIIDRNFFKALIWAAVSMGISALGLMH 228
BLAST of mRNA_H-elongata_contig181045.4834.1 vs. uniprot
Match: A0A2D6D4X0_9BACT (Permease n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A2D6D4X0_9BACT) HSP 1 Score: 47.4 bits (111), Expect = 8.400e-5 Identity = 22/48 (45.83%), Postives = 36/48 (75.00%), Query Frame = 1
Query: 1 GVLGFSRGALLVSLCWVAILVYIIDRKWWQAAVWAVISATFSMVGIIH 144
GV+ RG LL ++ A++VYI++R++ +AAVWA+ +A SMVG++H
Sbjct: 421 GVIALDRGFLLTAMVLAAMMVYIVEREFRKAAVWALAAAGLSMVGLMH 468 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig181045.4834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig181045.4834.1 >prot_H-elongata_contig181045.4834.1 ID=prot_H-elongata_contig181045.4834.1|Name=mRNA_H-elongata_contig181045.4834.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp GVLGFSRGALLVSLCWVAILVYIIDRKWWQAAVWAVISATFSMVGIIHback to top mRNA from alignment at H-elongata_contig181045:203..346- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig181045.4834.1 ID=mRNA_H-elongata_contig181045.4834.1|Name=mRNA_H-elongata_contig181045.4834.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig181045:203..346- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig181045:203..346- >mRNA_H-elongata_contig181045.4834.1 ID=mRNA_H-elongata_contig181045.4834.1|Name=mRNA_H-elongata_contig181045.4834.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig181045:203..346- (Himanthalia elongata Himel1 dioecious)back to top |