mRNA_H-elongata_contig18097.4831.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig18097.4831.1
Unique Name	mRNA_H-elongata_contig18097.4831.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig18097.4831.1 vs. uniprot
Match: D8LS01_ECTSI (UBC core domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS01_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 2.730e-63
Identity = 96/102 (94.12%), Postives = 98/102 (96.08%), Query Frame = 1

Query:    1 VPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQVVCPPPNPDDPL 306
            VPGISATPYEDNLRYFNVVITGPEQSPYE+GSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQ +   PNPDDPL
Sbjct:   22 VPGISATPYEDNLRYFNVVITGPEQSPYEHGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 123

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BLAST of mRNA_H-elongata_contig18097.4831.1 vs. uniprot
Match: H3G9K8_PHYRM (UBC core domain-containing protein n=24 Tax=Oomycota TaxID=4762 RepID=H3G9K8_PHYRM)

HSP 1 Score: 187 bits (476), Expect = 6.370e-59
Identity = 90/102 (88.24%), Postives = 93/102 (91.18%), Query Frame = 1

Query:    1 VPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQVVCPPPNPDDPL 306
            V GISATPYEDNLRYF VVI GP+ SPYENG FKLELFLPSDYPMAPPKVRFLT+IYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQ +   PNPDDPL
Sbjct:   21 VAGISATPYEDNLRYFQVVIAGPQSSPYENGIFKLELFLPSDYPMAPPKVRFLTRIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 122

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BLAST of mRNA_H-elongata_contig18097.4831.1 vs. uniprot
Match: A0A024GCI7_9STRA (UBC core domain-containing protein n=3 Tax=Oomycota TaxID=4762 RepID=A0A024GCI7_9STRA)

HSP 1 Score: 187 bits (475), Expect = 9.960e-59
Identity = 88/102 (86.27%), Postives = 94/102 (92.16%), Query Frame = 1

Query:    1 VPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQVVCPPPNPDDPL 306
            VPGISATPYEDNLRYF VVI GP+ SPYENG FKLELFLP+DYPM+PPKVRFLT++YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQ +   PNPDDPL
Sbjct:   24 VPGISATPYEDNLRYFQVVIAGPQTSPYENGIFKLELFLPADYPMSPPKVRFLTRLYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 125

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BLAST of mRNA_H-elongata_contig18097.4831.1 vs. uniprot
Match: A0A484ED03_BRELC (UBC core domain-containing protein n=13 Tax=Oomycota TaxID=4762 RepID=A0A484ED03_BRELC)

HSP 1 Score: 185 bits (470), Expect = 5.220e-58
Identity = 89/102 (87.25%), Postives = 92/102 (90.20%), Query Frame = 1

Query:    1 VPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQVVCPPPNPDDPL 306
            V GISATPYEDNLRYF VVI GP+ SPYENG FKLELFLP DYPMAPPKVRFLT+IYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQ +   PNPDDPL
Sbjct:   21 VAGISATPYEDNLRYFQVVIAGPQSSPYENGIFKLELFLPVDYPMAPPKVRFLTRIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 122

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BLAST of mRNA_H-elongata_contig18097.4831.1 vs. uniprot
Match: K8YVJ5_NANGC (Ubiquitin-conjugating enzyme E2 N n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YVJ5_NANGC)

HSP 1 Score: 185 bits (470), Expect = 5.570e-58
Identity = 88/102 (86.27%), Postives = 93/102 (91.18%), Query Frame = 1

Query:    1 VPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQVVCPPPNPDDPL 306
            VPGISATPYEDN RYFNVVI GPE SPY+ G FKLELFLP+DYPMAPPKVRFLTK+YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQ +   PNP+DPL
Sbjct:   21 VPGISATPYEDNFRYFNVVIEGPESSPYQQGIFKLELFLPADYPMAPPKVRFLTKMYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSCPNPEDPL 122

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BLAST of mRNA_H-elongata_contig18097.4831.1 vs. uniprot
Match: A0A7S2WD25_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WD25_9STRA)

HSP 1 Score: 184 bits (468), Expect = 1.650e-57
Identity = 87/102 (85.29%), Postives = 94/102 (92.16%), Query Frame = 1

Query:    1 VPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQVVCPPPNPDDPL 306
            VPGISATPYEDNLRYFNV I GP+ SPY +G+FKLELFLP+DYPMAPPKVRFLTKIYHPN+DKLGRICL+ILKDKWSPALQIRTVLLSIQ +   PNPDDPL
Sbjct:   34 VPGISATPYEDNLRYFNVAIAGPDDSPYMHGTFKLELFLPADYPMAPPKVRFLTKIYHPNVDKLGRICLNILKDKWSPALQIRTVLLSIQGLLSAPNPDDPL 135

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BLAST of mRNA_H-elongata_contig18097.4831.1 vs. uniprot
Match: A0A1Y1YSZ6_9FUNG (Ubiquitin-conjugating enzyme E2 N n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YSZ6_9FUNG)

HSP 1 Score: 183 bits (465), Expect = 3.110e-57
Identity = 86/101 (85.15%), Postives = 92/101 (91.09%), Query Frame = 1

Query:    4 PGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQVVCPPPNPDDPL 306
            PGISATP+EDNLRYF+V+I GP QSP+E G+F LELFLP DYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQ +   PNPDDPL
Sbjct:   20 PGISATPHEDNLRYFDVIIAGPSQSPFEGGTFSLELFLPEDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 120

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BLAST of mRNA_H-elongata_contig18097.4831.1 vs. uniprot
Match: A0A067CT66_SAPPC (UBC core domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CT66_SAPPC)

HSP 1 Score: 184 bits (467), Expect = 3.220e-57
Identity = 91/113 (80.53%), Postives = 96/113 (84.96%), Query Frame = 1

Query:    1 VPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQVVCPPPNPDDPLRTTWRRCGKRT 339
            VPGISATPYEDNLRYF VVI GP+ SPYENG FKLELFLP+DYPMAPPKVRFLT+IYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQ +   P P   LR T    G+RT
Sbjct:   23 VPGISATPYEDNLRYFQVVIAGPQSSPYENGIFKLELFLPADYPMAPPKVRFLTRIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTPMIRLRMTLPTTGRRT 135

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BLAST of mRNA_H-elongata_contig18097.4831.1 vs. uniprot
Match: A0A397TQD6_9GLOM (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TQD6_9GLOM)

HSP 1 Score: 183 bits (465), Expect = 3.770e-57
Identity = 88/102 (86.27%), Postives = 93/102 (91.18%), Query Frame = 1

Query:    1 VPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQVVCPPPNPDDPL 306
            VPGISA P+EDNLRYF+V ITGPEQSP+E G FKLELFLP +YPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQ +   PNPDDPL
Sbjct:   20 VPGISARPHEDNLRYFDVDITGPEQSPFEGGVFKLELFLPEEYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121

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BLAST of mRNA_H-elongata_contig18097.4831.1 vs. uniprot
Match: A0A177WFK2_BATDL (Ubiquitin-conjugating enzyme E2 N n=2 Tax=Batrachochytrium TaxID=100474 RepID=A0A177WFK2_BATDL)

HSP 1 Score: 182 bits (463), Expect = 5.880e-57
Identity = 87/101 (86.14%), Postives = 91/101 (90.10%), Query Frame = 1

Query:    4 PGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQVVCPPPNPDDPL 306
            PGI A P+EDNLRYF+VVI GP QSP+E GSFKLELFLP DYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQ +   PNPDDPL
Sbjct:   20 PGIEAHPHEDNLRYFDVVIAGPSQSPFEGGSFKLELFLPDDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPNPDDPL 120

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig18097.4831.1 vs. uniprot

BLAST of mRNA_H-elongata_contig18097.4831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LS01_ECTSI	2.730e-63	94.12	UBC core domain-containing protein n=1 Tax=Ectocar...	[more]
H3G9K8_PHYRM	6.370e-59	88.24	UBC core domain-containing protein n=24 Tax=Oomyco...	[more]
A0A024GCI7_9STRA	9.960e-59	86.27	UBC core domain-containing protein n=3 Tax=Oomycot...	[more]
A0A484ED03_BRELC	5.220e-58	87.25	UBC core domain-containing protein n=13 Tax=Oomyco...	[more]
K8YVJ5_NANGC	5.570e-58	86.27	Ubiquitin-conjugating enzyme E2 N n=3 Tax=Monodops...	[more]
A0A7S2WD25_9STRA	1.650e-57	85.29	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A1Y1YSZ6_9FUNG	3.110e-57	85.15	Ubiquitin-conjugating enzyme E2 N n=1 Tax=Basidiob...	[more]
A0A067CT66_SAPPC	3.220e-57	80.53	UBC core domain-containing protein n=1 Tax=Saprole...	[more]
A0A397TQD6_9GLOM	3.770e-57	86.27	Ubiquitin-conjugating enzyme/RWD-like protein n=1 ...	[more]
A0A177WFK2_BATDL	5.880e-57	86.14	Ubiquitin-conjugating enzyme E2 N n=2 Tax=Batracho...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig18097	contig	H-elongata_contig18097:1405..7027 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	116.7
Seed ortholog evalue	4.6e-24
Seed eggNOG ortholog	159749.K0T8N1
Preferred name	UBE2N
KEGG ko	ko:K10580
KEGG Pathway	ko04120,ko04624,map04120,map04624
GOs	GO:0000151,GO:0000165,GO:0000187,GO:0000209,GO:0000724,GO:0000725,GO:0000726,GO:0000729,GO:0000902,GO:0000904,GO:0001650,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002753,GO:0002757,GO:0002758,GO:0002764,GO:0002768,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006301,GO:0006302,GO:0006303,GO:0006310,GO:0006325,GO:0006355,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006513,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007254,GO:0007275,GO:0007346,GO:0007399,GO:0007409,GO:0007412,GO:0007416,GO:0007528,GO:0007610,GO:0007625,GO:0007626,GO:0007629,GO:0007630,GO:0008104,GO:0008150,GO:0008152,GO:0008344,GO:0008594,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009794,GO:0009888,GO:0009889,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010015,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0010053,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0010638,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0010992,GO:0010994,GO:0016043,GO:0016310,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019538,GO:0019725,GO:0019787,GO:0019899,GO:0019941,GO:0021700,GO:0022008,GO:0022607,GO:0022622,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0030030,GO:0030154,GO:0030163,GO:0030182,GO:0030522,GO:0030534,GO:0031056,GO:0031058,GO:0031098,GO:0031175,GO:0031323,GO:0031325,GO:0031326,GO:0031347,GO:0031349,GO:0031371,GO:0031372,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031624,GO:0031625,GO:0031974,GO:0031981,GO:0032147,GO:0032182,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032872,GO:0032874,GO:0032879,GO:0032880,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033182,GO:0033365,GO:0033554,GO:0033674,GO:0034097,GO:0034613,GO:0034622,GO:0034641,GO:0034644,GO:0035370,GO:0035556,GO:0035872,GO:0036211,GO:0040007,GO:0040019,GO:0042221,GO:0042325,GO:0042327,GO:0042461,GO:0042493,GO:0042592,GO:0042742,GO:0043085,GO:0043122,GO:0043123,GO:0043130,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043549,GO:0043632,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044390,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045088,GO:0045089,GO:0045739,GO:0045787,GO:0045859,GO:0045860,GO:0045931,GO:0045935,GO:0045937,GO:0045977,GO:0045995,GO:0046328,GO:0046330,GO:0046483,GO:0046530,GO:0046686,GO:0048364,GO:0048468,GO:0048471,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048589,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050808,GO:0050851,GO:0050852,GO:0050896,GO:0051052,GO:0051054,GO:0051090,GO:0051091,GO:0051092,GO:0051094,GO:0051124,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051258,GO:0051276,GO:0051338,GO:0051347,GO:0051403,GO:0051438,GO:0051443,GO:0051603,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0060074,GO:0060255,GO:0060341,GO:0061057,GO:0061564,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070302,GO:0070304,GO:0070423,GO:0070498,GO:0070534,GO:0070555,GO:0070647,GO:0070727,GO:0070887,GO:0070914,GO:0071214,GO:0071310,GO:0071345,GO:0071347,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071900,GO:0071902,GO:0072347,GO:0072665,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090558,GO:0090627,GO:0098542,GO:0099402,GO:0104004,GO:0120036,GO:0120039,GO:0120113,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902275,GO:1902494,GO:1902531,GO:1902533,GO:1902914,GO:1902916,GO:1903320,GO:1903322,GO:1903506,GO:1903827,GO:1905269,GO:1905392,GO:1990234,GO:2000008,GO:2000026,GO:2000112,GO:2001020,GO:2001022,GO:2001141,GO:2001252
EggNOG free text desc.	Belongs to the ubiquitin-conjugating enzyme family
EggNOG OGs	2XAQE@2836,COG5078@1,KOG0417@2759
EC	2.3.2.23
COG Functional cat.	O
Best tax level	Bacillariophyta
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000,ko03400,ko04121
Hectar predicted targeting category	other localisation
Exons	5
Model size	398
Cds size	222
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930043.5155306-UTR-H-elongata_contig18097:1404..1492	1622930043.5155306-UTR-H-elongata_contig18097:1404..1492	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig18097 1405..1492 +
1691679258.8631527-UTR-H-elongata_contig18097:1404..1492	1691679258.8631527-UTR-H-elongata_contig18097:1404..1492	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig18097 1405..1492 +
1622930043.528575-UTR-H-elongata_contig18097:2186..2230	1622930043.528575-UTR-H-elongata_contig18097:2186..2230	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig18097 2187..2230 +
1691679258.8768346-UTR-H-elongata_contig18097:2186..2230	1691679258.8768346-UTR-H-elongata_contig18097:2186..2230	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig18097 2187..2230 +
1622930043.5880256-UTR-H-elongata_contig18097:6507..6513	1622930043.5880256-UTR-H-elongata_contig18097:6507..6513	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig18097 6508..6513 +
1691679258.9119706-UTR-H-elongata_contig18097:6507..6513	1691679258.9119706-UTR-H-elongata_contig18097:6507..6513	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig18097 6508..6513 +
1622930043.5994244-UTR-H-elongata_contig18097:6989..7027	1622930043.5994244-UTR-H-elongata_contig18097:6989..7027	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig18097 6990..7027 +
1691679258.922732-UTR-H-elongata_contig18097:6989..7027	1691679258.922732-UTR-H-elongata_contig18097:6989..7027	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig18097 6990..7027 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930043.543003-CDS-H-elongata_contig18097:2230..2245	1622930043.543003-CDS-H-elongata_contig18097:2230..2245	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig18097 2231..2245 +
1691679258.8881629-CDS-H-elongata_contig18097:2230..2245	1691679258.8881629-CDS-H-elongata_contig18097:2230..2245	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig18097 2231..2245 +
1622930043.557186-CDS-H-elongata_contig18097:3494..3621	1622930043.557186-CDS-H-elongata_contig18097:3494..3621	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig18097 3495..3621 +
1691679258.8962536-CDS-H-elongata_contig18097:3494..3621	1691679258.8962536-CDS-H-elongata_contig18097:3494..3621	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig18097 3495..3621 +
1622930043.5727823-CDS-H-elongata_contig18097:6427..6507	1622930043.5727823-CDS-H-elongata_contig18097:6427..6507	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig18097 6428..6507 +
1691679258.9039102-CDS-H-elongata_contig18097:6427..6507	1691679258.9039102-CDS-H-elongata_contig18097:6427..6507	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig18097 6428..6507 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig18097.4831.1	prot_H-elongata_contig18097.4831.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig18097 2231..6507 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig18097:1405..7027+
coding sequence from alignment at H-elongata_contig18097:1405..7027+

protein sequence of mRNA_H-elongata_contig18097.4831.1

>prot_H-elongata_contig18097.4831.1 ID=prot_H-elongata_contig18097.4831.1|Name=mRNA_H-elongata_contig18097.4831.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQVVCP
PPNPDDPLRTTWRRCGKRTRRRR*

mRNA from alignment at H-elongata_contig18097:1405..7027+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig18097.4831.1 ID=mRNA_H-elongata_contig18097.4831.1|Name=mRNA_H-elongata_contig18097.4831.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5623bp|location=Sequence derived from alignment at H-elongata_contig18097:1405..7027+ (Himanthalia elongata Himel1 dioecious)
GTTCCGGGCATCAGCGCAACGCCCTACGAAGATAACCTACGCTACTTCAA
CGTCGTGATCACGGGGCCGGAGCAGTCGCCATACGAAAGTGAGACGAGAG
ATCTACGGAGACGCTCGCTATTCCGTGGCGCACTCCTGTGTCTCGTGATG
TTTTCTTCCTCTCCCCGACCTTTTTTTTTATTTTAAAGCATAAGAACCAA
GCGTTTTGGGTTCGGTTTGTGTACTACCCTCTTGAGTTTTGAAGGAATTC
ATCACCCCTCCCCCTCCCCCCAAAAAACGTTTTTTGTCATCAATTGGTTT
TTATTCGTAACATATACCCTCTTTACACGGTAGAGCTGCATTGAATCGAT
TTCGACCCGGATATCCTGGGGCTCGAAAGGTCGGGGCGCTCCACGGCCTC
CACTGAAATATTGCCTATCACGAGAAGTGGTTCAGTTTAATCGACTTTCA
AGTTAACTTGTAGTAAGGTACTGGCGCCTCTTTGAGGGCTTTCGAGATAG
GGATGTCTTGCTAGGGCCGGTTCATTTTGTGCGGCGACCAGGCCATCACG
TTTGGGCACAAAATTCTGTAGTCCCTGCTTCACAGTCGGGGGAGCGCAGC
TCAAAACTGCAATACCGGACCTGATCCCATCCCATCCCATCCGATATTAT
CCAATTTCACACACCCCTAACCAGCTTGATTTGCCTCGTGTCTCGTCTCC
CCCGGTGATGTGCACCCCCCCTCCCCTCCCCCCTCCTATGCATGCAAACG
TTTCAATCGGTGGTCACACGTGTTGCGAAAAGACGGTTCCTTCAAGCTAG
AGCTTTTCCTCCCCTCGGACTACCCGATGGCGCCTCCCAAGGTGGGGAAA
CTCTCAATGTATTTACAGTATATCGATAAGCGGAACTCGTCATTGCCTAA
CAATCCGAAGATCGAATTTAATCCCCGTGGATGTCATATACGTGGGATCC
CACGAGTCGTTTTCAGCTTTACATCTCCGACAGCCTTGCGCTTTTTATGA
TTCAGTGTCTGTGCGGGAAGTCGTTATTATCAACAGGTGGTCTCTTGCTC
TGGCCTCTTGCTTTGGCCTCGATAGAGCGAACGTGGTTGTACACTCGTAA
TATTGAATAGGAGAATATTTTTTTAACTGTATGGAGTGAAGGAGAGAGAG
AAACTTGCATGATCCATTCATGACTGTCCCCCAATCCCCGTCGCTATATT
GTTTTCGGCTGCTGCTGCTGCTACTGCTACTGCTGTACGCCGCACCGCTA
CGCAGCAATGTGTTTGATTTTTATTTGTATTTTGATATTTTACGTCAGGT
TGTGAGTTTGACGAATTTCTTGAAATCAAGCAACAGCCCATTTTTCTGGT
GGTGCATGGTGTCTAATGCAATCGATGTACCATAGTACACAACACGGGGT
GTTAATTTCGTTTTACTCCGCTACGTTGAAATAGAGCTTGTGACATATCT
CGTACACGGAAATGTGTTGTTAACGACGAATCCGAGTTCGTCCTGGTGGA
ACTCCCCTTGATCGCGGATTTCCGCGGGGGCGATTCAACCACAATGAAGT
AGAAGTAAAAAGAAATGCAGCCTTGTCGGAAGTAAGAAAACATCTGTTGG
ACACTGCGTGCCAAATGAGGACGCGGCGAGGCCCCATTACGAGTTTGTGA
GGTCTCTTCCTTCGATACCTTGCGTCTACGGACGCCTTCGACACCTCTTG
TTAAACCCCGCACAAGCGAATATATACCCCGCTGAAAAATTTGTGTTGAG
AGTGTGTCACGAGGCGCGACTGAAGCTCTTTCGCGGACCACCTTTGTATT
TTTCTTTCTTTCTTGACTGTCTGTCTTACTCTCTTCGTCTTACTCTCTTC
ACCGAAACTATAGTACAGCAGATGTTCACACGGCGAAGGCAGAGGCAAAG
CGATTCGGGAACACCCCGTTCAGTTCAAGCACTGCACTGCTCTCTTGTTG
TTCATGGTCGTGTGAACGCAAATCGGTCTCGCGCGCCTGTTCCGTCCTGT
CCATTGGTTAACTTGATTCTTGTGCAAATATTTTTGTCTCTTGTTTCGGT
TTGCGGTGGGGTGCCGGGGCGTGTTTGGCTGGCTGGCCAGGTGCGCTTTC
TGACGAAAATCTACCACCCGAATATCGACAAGTTGGGCCGGATCTGTCTC
GACATTCTCAAGGATAAGTGGTCCCCAGCCCTACAGATCAGGACCGTGCT
GCTCAGCATTCAGGTGGGTGGTTAGGCCCTGTCTTAATGACCAGCTCGCA
TCTGTTTTTAAAATCTGTTTACAGACAAATTATATGAACATATTCTATTT
TGGGTCTTAACAACAATTAGAGACATACGGTGTAGTTAGAGTGATACGCC
TACTCGTCACTATAACCCCAATTGAAATACAAGCAGATACAACTGAGAAA
TACAAAAATAGCTTCGTAGCTTCTGTATAGACTGAGCAATGTATCCCACA
GCTCAGTCATTTATTCCCCCCTCTCACACTCATCTTCTTCTACAGTCCAC
TCTCCTCGAAGCTATAGCTATATGTATAGCTTTGGTTTGGCGTCCTCACA
TAAAAAAATAATTTAAAGTGTACGGGATAATAATGGGATCCCTGACCCGA
TGAACTTACTATTGGGGAACACGATTTATATCGAGTGACGATTTGTGCTC
AAGGTACAGGAGTAATTCCACATTCGAACCTGACGATAGTTGGTCCCCTG
GATTACACTCCTCACGGCGCTAAGAAGATGTAGATGTTTGTAGGGTTGGA
ATGAGGTCAAGTTTTTTTTATATAAAACATACTCCAGTAGGCGATGAGGC
GCAGGCCCGGCTTCCGCGGTCCTGCTGCATCGCCGCAGCCCTACTAGCCA
GAGACGCTCAGCAGACTGCAACCGACATACCTAGGTTACGTCGACATTTT
TTGTCTTCCTTTTTATCCTTGCTTTATTCCTCTTTGGAGTAAAGGAGGCG
GCCCCCGAACAACAGCAGCCGAGCACCCTTCACCCGTGATAACACCTTTG
CCATAGTCTATACTCTATAGTCTATACTCTATACAGTATAGTGGTATCTG
GCATGTCAAATTTAGGGTTGTACAAGAAAATTTGGGCAGCTTAACGAGTT
GTCTTCCATCGTTCGAAATAAAGTTCAAACCAAGATGCGCTGATGTTCGA
TGAGACAAAAAAAAACTCCAACCTTAAGCAACAACGAACAATAACAGTAG
GGCGCCTACGATTTTCCACGCCCTCTACTTCCCACGACTGGTTAGAGTTG
CCTGGTCCCCGCCTCTGTCCGAAAACATGCTGTGATCGATTGGGCAAAGC
AAGGTCACGTAGTTTTTCGTTTTCGCAGCTATGCTGCTGTTCACTGATGT
TTTGGGGTCCAGCCGACAGATTCAATTCGCCGACAGATCTAATTAAATGC
CAAAATAATTAATAGGATAGTCCATTTGGACAGATCCTGTGTGCCAAGAA
CTTCCTGACTAGCAGTGTCGTGCTCTTTTAGCCAATCAGATAATTTTCTG
TGTCGACAGATTCTATCGACACAGTTCACTTTCTGGTCAGGGGAGGGCCT
TACCGTGAGCATTACATTTTATTTTCTCCATTACTTACTGGGCTCTAGTA
TACTATACTATACACTAGTGTATTATTGTTACTACTGTACTTAATACTAC
TACGTACATCGTTACTAGAAAAACCTTAAACTTATTCCAACCCTCCGAAC
ATCCACAACTTCTTAGCTCCGTGAGAGGAGTAATCCATGGGACCAACTAT
CGTCAGATTCGAATGTGTACATAACTAGTACCTTTGAACACAAAATCTTC
ACTTGTGATACTTCGTGTCCCCCAAAAATAAATTCATCGGGTCAACAGTG
TAATGTCGAGGTTCCCATCATTGTCCCGTACACTTATTACATAATAATTC
ATCATGACGTCATGTGGGGACTATGACTAAACCAGAGCCAAGAGAGTGTT
GGTGAGTTGATCTATGTTGATAAGTCGTAAACTAGGGAGATGTTGAAAAT
AGTAATAGTAGTGCTGTACAGCGTAAAAATAAAAACTAAGATAAGTGTAC
TTTGTCTTATTTTTAGAGGGTATAGTTAAGTTCAGCACATGATTGCATCG
TAAACGCGAATTCCTTTCGGGGAGCGCATGGCCTGGCTTAGAGGTGATTT
TACACTCGCAACATTTTGATTATAGTTAACTACTAATTGAACGTTAAGAA
ATTAAAGCACATGGTTGCATTGCATTGTACATATATCTCGATTGATTTTG
GTATTACAAGCATCAGCGCTCGCGATAAATAGTGAATCGTGTTTCGCAAT
AATAATGAGTTCATCAGGTCAACGGAATAATGTCAGGGCTCATATTATAT
CCTAAAACCATCGAGAGTGGGCGATAGAAAGGGGGGCGGGCGGGGGAGAA
TGAGTGATTATCGTGAGAAAGATTCAGCTCTCTCTTTCCCTCCTCGATCG
TGAAGTCGATTTTTGCGCACCCTCGAAATAATTGTTCTCCACTTTTTATT
AGAAAAACCTTAAACTTGTTGGGCATGACGTGAGATAAAGCCCCCATTTG
TGTGACTTCTCCAAAATTCAAACTTACGTCCCAAACATCATAAGGTTTGG
AGGAGATACTGACTAAACCGCCATCATAAGGTTTGGAGGAGATACTGACT
AAACCGCCGGGGTATAGTATTATACTAAAATATACTATGCAAAGTATAGT
ATAGTTACAGTACAGTATAGTATAGTATACAGTAGTATAATGTACTACAC
TATACTGTCTATACTGTATATGTACTGTACCAAACTGTTCTGTGGAGTAG
TACAGTGTAGTAGTATACTGTTTCGTATCATTCTGCAGTACACTATTTGT
ACTGCGCGCACACCGCCGAGGATAAAATAGCTCAATTCGCCTGAATAGAC
TCTGATTATTTTAATTCGATCCACCCTCATAACGGAAAATCGGCTTCTCT
CGATGAAGACTGGGCGCATCGTGATCTCGTCGTGTCCCACCCGCACACCC
GACCGCTCTGCTCTCCACGGCAGTCTGTCCCCCCCCCAACCCCGATGACC
CCTTGCGAACGACGTGGCGGAGATGTGGAAAACGAACGAGGCGCAGGCGC
TGAAGATAGGTGTGCTCTCTTTAACCACGATTCGGTTTTCGATCCGTAAA
TAATCCCATGGAATGAGATATGTTTTCGCTAATCGGTACCAGATAGGCCG
TTTAGTCGTCCGGTCTGTCTTGCGATTGGCCCGGGTAATAGGACTCTAAT
AATAGTATTATAATAGACTACTAGTAGTAGTCCGGTGGTTACCACCTTGA
GCAATGAGTGCGGAAATCATAAGCTCGATTGCCAACATGATACCTAAAAA
AAGTATAATGAACAGCGTTGCGGTAGGTGAGGGGTTATTAACTTCCTTTT
GATGATATCGCAATTACTCTAATGATAATAAAAATAACATGGAACGGTGA
GAAAATATAAAGGAGGATCTCAAAGAAAGGGTCAAACGTCCAGAAGGCCC
GCGCGCGCGCCTGAACTAGTGGCGACTAGCGACTCTTATCCGGACCCTTA
TTCGTCTTTGCCCGCACCCACTCGCTTATCTACAGCGCGGGAATGGACCC
AGCGGCTGGCGAGGGCAACGGCG

Coding sequence (CDS) from alignment at H-elongata_contig18097:1405..7027+

>mRNA_H-elongata_contig18097.4831.1 ID=mRNA_H-elongata_contig18097.4831.1|Name=mRNA_H-elongata_contig18097.4831.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig18097:1405..7027+ (Himanthalia elongata Himel1 dioecious)
ATGGCGCCTCCCAAGATGGCGCCTCCCAAGGTGCGCTTTCTGACGAAAAT
CTACCACCCGAATATCGACAAGTTGGGCCGGATCTGTCTCGACATTCTCA
AGGATAAGTGGTCCCCAGCCCTACAGATCAGGACCGTGCTGCTCAGCATT
CAGGTGGGTGCGCTTTCTGACGAAAATCTACCACCCGAATATCGACAAGT
TGGGCCGGATCTGTCTCGACATTCTCAAGGATAAGTGGTCCCCAGCCCTA
CAGATCAGGACCGTGCTGCTCAGCATTCAGGTGGTCTGTCCCCCCCCCAA
CCCCGATGACCCCTTGCGAACGACGTGGCGGAGATGTGGAAAACGAACGA
GGCGCAGGCGCTGATCTGTCCCCCCCCCAACCCCGATGACCCCTTGCGAA
CGACGTGGCGGAGATGTGGAAAACGAACGAGGCGCAGGCGCTGA