mRNA_H-elongata_contig180942.4829.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig180942.4829.1
Unique NamemRNA_H-elongata_contig180942.4829.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig180942.4829.1 vs. uniprot
Match: D7FS90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS90_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 3.090e-19
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   22 DKTEWTVTGGYTVGEFWGLVLQTVCLPGAAVALLTFMVFFYKSPAWTSWVR 174
            D+ EW+V  GYTVG+FWGLV QT+CLP AAVAL+TF +  YKSPAW SWV+
Sbjct:   46 DQEEWSVDSGYTVGQFWGLVTQTLCLPAAAVALMTFALHSYKSPAWPSWVK 96
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BLAST of mRNA_H-elongata_contig180942.4829.1 vs. uniprot
Match: A0A6H5KA77_9PHAE (FAD-binding FR-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA77_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.270e-17
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   22 DKTEWTVTGGYTVGEFWGLVLQTVCLPGAAVALLTFMVFFYKSPAWTSWVR 174
            D+ EW+V  GYTVG+FWGLV QT+CLP AAVAL+TF +  YKSPAW SWV+
Sbjct:   46 DQEEWSVDSGYTVGQFWGLVTQTLCLPAAAVALMTFTLHSYKSPAWPSWVK 96
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig180942.4829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FS90_ECTSI3.090e-1968.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KA77_9PHAE2.270e-1768.63FAD-binding FR-type domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig180942contigH-elongata_contig180942:71..244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_004920.1
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930043.310856-CDS-H-elongata_contig180942:70..2441622930043.310856-CDS-H-elongata_contig180942:70..244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180942 71..244 -
1691679258.7848551-CDS-H-elongata_contig180942:70..2441691679258.7848551-CDS-H-elongata_contig180942:70..244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180942 71..244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig180942.4829.1prot_H-elongata_contig180942.4829.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig180942 71..244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig180942.4829.1

>prot_H-elongata_contig180942.4829.1 ID=prot_H-elongata_contig180942.4829.1|Name=mRNA_H-elongata_contig180942.4829.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
FYLFFSQDKTEWTVTGGYTVGEFWGLVLQTVCLPGAAVALLTFMVFFYKS
PAWTSWVR
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mRNA from alignment at H-elongata_contig180942:71..244-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig180942.4829.1 ID=mRNA_H-elongata_contig180942.4829.1|Name=mRNA_H-elongata_contig180942.4829.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig180942:71..244- (Himanthalia elongata Himel1 dioecious)
TTTTATTTATTTTTTTCCCAGGACAAGACAGAGTGGACGGTTACGGGCGG
CTACACGGTGGGCGAGTTCTGGGGCCTGGTGCTGCAGACCGTTTGTCTGC
CCGGGGCGGCCGTCGCACTCTTGACGTTCATGGTGTTTTTCTACAAGTCT
CCGGCTTGGACATCCTGGGTTCGT
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Coding sequence (CDS) from alignment at H-elongata_contig180942:71..244-

>mRNA_H-elongata_contig180942.4829.1 ID=mRNA_H-elongata_contig180942.4829.1|Name=mRNA_H-elongata_contig180942.4829.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig180942:71..244- (Himanthalia elongata Himel1 dioecious)
TTTTATTTATTTTTTTCCCAGGACAAGACAGAGTGGACGGTTACGGGCGG
CTACACGGTGGGCGAGTTCTGGGGCCTGGTGCTGCAGACCGTTTGTCTGC
CCGGGGCGGCCGTCGCACTCTTGACGTTCATGGTGTTTTTCTACAAGTCT
CCGGCTTGGACATCCTGGGTTCGTTTTTATTTATTTTTTTCCCAGGACAA
GACAGAGTGGACGGTTACGGGCGGCTACACGGTGGGCGAGTTCTGGGGCC
TGGTGCTGCAGACCGTTTGTCTGCCCGGGGCGGCCGTCGCACTCTTGACG
TTCATGGTGTTTTTCTACAAGTCTCCGGCTTGGACATCCTGGGTTCGT
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